Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
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MetaCyc Gene-Ontology-Terms Class: GO:0005737 - cytoplasm

Definition: All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Parent Classes:
GO:0044424 - intracellular part

Part Of:
GO:0005622 - intracellular

Parts:
GO:0005794 - Golgi apparatus (24) ,
GO:0005840 - ribosome (56) ,
GO:0044444 - cytoplasmic part (2702) ,
GO:0045239 - tricarboxylic acid cycle enzyme complex (5) ,
GO:0042579 - microbody (80) ,
GO:0005783 - endoplasmic reticulum (83) ,
GO:0005739 - mitochondrion (148) ,
GO:0045254 - pyruvate dehydrogenase complex (4) ,
GO:0045248 - cytosolic oxoglutarate dehydrogenase complex (1) ,
GO:0005960 - glycine cleavage complex (4) ,
GO:0005829 - cytosol (1700)

Term Members:
biotin carboxyl carrier protein (accB) ,
reduced thioredoxin 2 (trxC) ,
sulfur transfer protein (tusE) ,
apo-[acyl carrier protein] (acpP) ,
predicted PTS permease - SgcB subunit ,
flavorubredoxin (norV) ,
D-Ala-D-Ala dipeptidase (ddpX) ,
DNA polymerase III, χ subunit (holC) ,
predicted PTS permease - FrvA subunit ,
putative protein secretion protein for export (gspE) ,
glycine cleavage system H protein (gcvH) ,
fructose PTS permease - FruB subunit ,
nucleotide exchange factor GrpE ,
frataxin, iron-binding and oxidizing protein (cyaY) ,
sulfur transfer protein complex, TusD subunit (yheN) ,
RNA polymerase, sigma 70 (sigma D) factor (rpoD) ,
DNA polymerase III, θ subunit (holE) ,
DnaN ,
DNA polymerase III, ψ subunit (holD) ,
PrlF antitoxin (sohA) ,
RNA polymerase, sigma 19 factor (fecI) ,
RNA polymerase, sigma S (sigma 38) factor (rpoS) ,
RNA polymerase, sigma 24 (sigma E) factor (rpoE) ,
sulfur transfer protein complex, TusB subunit (yheL) ,
predicted PTS permease - FrwB subunit ,
CysB ,
RNA polymerase, sigma 32 (sigma H) factor (rpoH) ,
RhlB ,
RNA polymerase, sigma 28 (sigma F) factor (fliA) ,
sulfur transfer protein complex, TusC subunit (yheM) ,
FabA ,
threonine synthase (thrC) ,
UDP-glucose 4-epimerase monomer (galE) ,
Fcl ,
Pgi ,
mannose-6-phosphate isomerase (manA) ,
phosphoglucomutase (pgm) ,
FabH ,
PanD proenzyme, π protein ,
LeuB ,
2-isopropylmalate synthase (leuA) ,
phosphoserine phosphatase (serB) ,
DapF ,
tetrahydrodipicolinate succinylase (dapD) ,
4-hydroxy-tetrahydrodipicolinate synthase (dapA) ,
Asd ,
4-hydroxy-tetrahydrodipicolinate reductase (dapB) ,
5-keto-D-gluconate 5-reductase (idnO) ,
HisB ,
imidazole glycerol phosphate synthase, HisF subunit ,
imidazole glycerol phosphate synthase, HisH subunit ,
N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase (hisA) ,
phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase (hisI) ,
HisG ,
geranyl diphosphate synthase / farnesyl diphosphate synthase (ispA) ,
isopentenyl diphosphate isomerase (idi) ,
GdhA ,
subunit of undecaprenyl diphosphate synthase (ispU) ,
carbamoyl phosphate synthetase, α chain (carA) ,
aspartate carbamoyltransferase, PyrI subunit ,
aspartate carbamoyltransferase, PyrB subunit ,
PyrC ,
PyrE ,
PyrF ,
UMP kinase (pyrH) ,
selenide, water dikinase (selD) ,
selenocysteine synthase (selA) ,
phosphoglucosamine mutase (glmM) ,
GlmU ,
UDP-N-acetylmuramate:L-alanyl-γ-D-glutamyl-meso-diaminoheptanedioate-D-alanine ligase [multifunctional] (mpl) ,
chorismate lyase (ubiC) ,
ribose-phosphate diphosphokinase (prs) ,
ribose 1,5-bisphosphokinase (phnN) ,
GlmS ,
glycerol-3-phosphate dehydrogenase (gpsA) ,
PssA ,
cytoplasmic trehalase (treF) ,
trehalose-6-phosphate hydrolase (treC) ,
quinolinate phosphoribosyltransferase (decarboxylating) monomer (nadC) ,
NadA ,
NadR DNA-binding transcriptional repressor and NMN adenylyltransferase ,
glucokinase (glk) ,
rhamnulose-1-phosphate aldolase monomer (rhaD) ,
L-rhamnose mutarotase ,
XylA ,
LpxB ,
UDP-2,3-diacylglucosamine hydrolase (lpxH) ,
LpxD ,
UDP-3-O-acyl-N-acetylglucosamine deacetylase (lpxC) ,
LpxA ,
2,3-diketo-L-gulonate reductase monomer (yiaK) ,
L-ribulose 5-phosphate 4-epimerase monomer (araD) ,
3-deoxy-D-manno-octulosonate cytidylyltransferase (kdsB) ,
3-deoxy-D-manno-octulosonate 8-phosphate synthase (kdsA) ,
D-arabinose 5-phosphate isomerase (gutQ) ,
L-ascorbate 6-phosphate lactonase (ulaG) ,
AccC ,
acetyl-CoA carboxyltransferase, α subunit (accA) ,
acetyl-CoA carboxyltransferase, β subunit (accD) ,
malate synthase A (aceB) ,
malate synthase G (glcB) ,
L-arabinose isomerase monomer (araA) ,
L-ribulokinase monomer (araB) ,
GlpD ,
Udp ,
uridine kinase / cytidine kinase (udk) ,
dTMP kinase (tmk) ,
cytidylate kinase (cmk) ,
thymidine kinase / deoxyuridine kinase (tdk) ,
ribonucleoside hydrolase 1 (pyrimidine-specific) (rihA) ,
pantetheine-phosphate adenylyltransferase monomer (coaD) ,
dephospho-CoA kinase (coaE) ,
Dfp ,
7-cyano-7-deazaguanine reductase (queF) ,
tRNA-guanine transglycosylase monomer (tgt) ,
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (queA) ,
epoxyqueuosine reductase (queG) ,
molybdenum cofactor guanylyltransferase (mobA) ,
methionine adenosyltransferase (metK) ,
AcpS ,
AsnA ,
AsnB ,
GlnA ,
PheA ,
TyrA ,
Gpp ,
GDP pyrophosphokinase / GTP pyrophosphokinase (relA) ,
guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional] (spoT) ,
phosphopentomutase (deoB) ,
deoxyribose-phosphate aldolase (deoC) ,
FadD ,
FadI monomer ,
FadJ monomer ,
glycogen synthase (glgA) ,
1,4-α-glucan branching enzyme (glgB) ,
GlgC ,
ribokinase (rbsK) ,
ribose pyranase (rbsD) ,
L-rhamnose isomerase (rhaA) ,
FucI ,
L-fucose mutarotase (fucU) ,
NAD kinase monomer (nadK) ,
hydroxymethylbilane synthase (hemC) ,
glutamate-1-semialdehyde aminotransferase (hemL) ,
glutamyl-tRNA synthetase (gltX) ,
thymidylate synthase (thyA) ,
ArgA ,
acetylglutamate kinase monomer (argB) ,
N-acetylglutamylphosphate reductase (argC) ,
ArgD ,
ArgE ,
AtoB ,
ornithine decarboxylase, biosynthetic (speC) ,
ornithine decarboxylase, degradative (speF) ,
Adi (adiA) ,
SpeE ,
CadA ,
LdcC ,
homoserine O-succinyltransferase (metA) ,
cobalamin-dependent methionine synthase ,
lipoate synthase monomer (lipA) ,
uroporphyrinogen decarboxylase (hemE) ,
ferrochelatase (hemH) ,
coproporphyrinogen III oxidase (hemF) ,
coproporphyrinogen III dehydrogenase (hemN) ,
GTP cyclohydrolase I monomer (folE) ,
AnsA ,
Tdh ,
Kbl ,
4-aminobutyrate aminotransferase (puuE) ,
GabD ,
N-acetylmannosamine kinase (nanK) ,
propionyl-CoA synthetase (prpE) ,
2-methylisocitrate lyase (prpB) ,
adenine phosphoribosyltransferase (apt) ,
hypoxanthine-guanine phosphoribosyltransferase (hpt) ,
Amn ,
N5-carboxyaminoimidazole ribonucleotide synthetase monomer (purK) ,
PurA ,
adenylate kinase (adk) ,
ThiG ,
malate dehydrogenase (mdh) ,
isocitrate lyase monomer (aceA) ,
citrate synthase monomer (gltA) ,
2-methylcitrate synthase (prpC) ,
aconitate hydratase 1 (acnA) ,
fumarase C monomer (fumC) ,
succinyl-CoA synthetase, β subunit ,
succinyl-CoA synthetase, α subunit (sucD) ,
Icd ,
CysH ,
Epd ,
PdxJ ,
erythronate-4-phosphate dehydrogenase (pdxB) ,
SerC ,
PdxA ,
acetate kinase (ackA) ,
Pta ,
allantoinase monomer (allB) ,
ureidoglycolate dehydrogenase (allD) ,
MhpD ,
glutamate-pyruvate aminotransferase (alaA) ,
glutamate-pyruvate aminotransferase (alaC) ,
FrmA ,
PurF ,
phosphoribosylamine-glycine ligase (purD) ,
phosphoribosylformylglycinamide synthetase (purL) ,
PurM ,
phosphoribosylglycinamide formyltransferase 2 (purT) ,
arginyl-tRNA synthetase (argS) ,
cysteinyl-tRNA synthetase (cysS) ,
glutaminyl-tRNA synthetase (glnS) ,
isoleucyl-tRNA synthetase (ileS) ,
leucyl-tRNA synthetase (leuS) ,
valyl-tRNA synthetase (valS) ,
alanyl-tRNA synthetase (alaS) ,
asparaginyl-tRNA synthetase (asnS) ,
aspartyl-tRNA synthetase (aspS) ,
tyrosyl-tRNA synthetase (tyrS) ,
tryptophanyl-tRNA synthetase (trpS) ,
threonyl-tRNA synthetase (thrS) ,
seryl-tRNA synthetase (serS) ,
prolyl-tRNA synthetase (proS) ,
phenylalanyl-tRNA synthetase β-chain (pheT) ,
phenylalanyl-tRNA synthetase α-chain (pheS) ,
methionyl-tRNA synthetase (metG) ,
lysyl tRNA synthetase (LysRSs), constitutive (lysS) ,
histidyl-tRNA synthetase (hisS) ,
glycyl-tRNA synthetase, α subunit (glyQ) ,
glycyl-tRNA synthetase, β subunit (glyS) ,
UDP-N-acetylglucosamine enolpyruvoyl transferase (murA) ,
UDP-N-acetylenolpyruvoylglucosamine reductase (murB) ,
D-alanyl-D-alanine-adding enzyme (murF) ,
UDP-N-acetylmuramate-alanine ligase (murC) ,
UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase (murD) ,
UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase (murE) ,
D-alanine-D-alanine ligase A (ddlA) ,
D-alanine-D-alanine ligase B (ddlB) ,
transaldolase B (talB) ,
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (gpmM) ,
phosphoglycerate kinase (pgk) ,
glyceraldehyde 3-phosphate dehydrogenase-A monomer (gapA) ,
triose phosphate isomerase monomer (tpiA) ,
fructose bisphosphate aldolase monomer (fbaB) ,
fructose-1,6-bisphosphatase monomer (fbp) ,
fructose 1,6-bisphosphatase II (glpX) ,
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase monomer (gpmA) ,
GarL ,
UDP-N-acetylglucosamine 2-epimerase (rffE) ,
3-dehydroquinate synthase (aroB) ,
AroH ,
3-phosphoshikimate-1-carboxyvinyltransferase (aroA) ,
shikimate kinase II (aroL) ,
FabZ ,
dethiobiotin synthetase monomer (bioD) ,
adenosylmethionine-8-amino-7-oxononanoate aminotransferase monomer (bioA) ,
argininosuccinate lyase (argH) ,
ArgI ,
ArgF ,
FolP ,
phosphoribosylglycinamide formyltransferase 1 (purN) ,
2-hydroxy-6-ketonona-2,4-dienedioate hydrolase (mhpC) ,
bifunctional folylpolyglutamate synthetase / dihydrofolate synthetase (folC) ,
pantothenate synthetase monomer (panC) ,
2-dehydropantoate 2-reductase (panE) ,
3-methyl-2-oxobutanoate hydroxymethyltransferase monomer (panB) ,
pantothenate kinase monomer (coaA) ,
cyclopropane fatty acyl phospholipid synthase (cfa) ,
phosphoenolpyruvate carboxykinase (ATP) (pck) ,
trehalose-6-phosphate phosphatase (otsB) ,
6-phosphofructokinase-1 monomer (pfkA) ,
glutamate decarboxylase B subunit (gadB) ,
UDP-L-Ara4O C-4" transaminase (arnB) ,
E3 monomer (lpd) ,
aminomethyltransferase (gcvT) ,
AceF ,
D,D-heptose 1,7-bisphosphate phosphatase (gmhB) ,
D-sedoheptulose 7-phosphate isomerase (lpcA) ,
2-ketobutyrate formate-lyase/pyruvate formate-lyase 4, inactive (tdcE) ,
PflB ,
thioredoxin reductase monomer (trxB) ,
glutathione reductase (NADPH) (gor) ,
galactokinase (galK) ,
galactose-1-phosphate uridylyltransferase (galT) ,
galactose-1-epimerase (galM) ,
formate dehydrogenase N, α subunit (fdnG) ,
formate dehydrogenase-O, α subunit (fdoG) ,
taurine dioxygenase monomer (tauD) ,
tryptophanase (tnaA) ,
serine acetyltransferase monomer (cysE) ,
MetC ,
fused PutA transcriptional repressor / proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase ,
D-serine ammonia-lyase (dsdA) ,
carbonic anhydrase monomer (cynT) ,
cyanase monomer (cynS) ,
SodA ,
SodB ,
glyoxalase III, Hsp31 molecular chaperone (hchA) ,
murein tripeptide amidase A (mpaA) ,
CaiB monomer ,
pyrroline-5-carboxylate reductase monomer (proC) ,
trans-aconitate 2-methyltransferase (tam) ,
rep ,
ATP-dependent DNA helicase (recQ) ,
23S rRNA m6A1618 methyltransferase (rlmF) ,
23S rRNA pseudouridine synthase (rluC) ,
β-1,6-galactofuranosyltransferase (wbbI) ,
RNase D (rnd) ,
Gst (gstA) ,
β-N-acetylhexosaminidase (nagZ) ,
L-2-hydroxyglutarate oxidase (lhgO) ,
oligopeptidase B (ptrB) ,
hybrid-cluster protein (hcp) ,
acetyl esterase (aes) ,
ribonuclease G (RNAse G) monomer (rng) ,
α-amylase (amyA) ,
tRNAIle-lysidine synthetase (tilS) ,
tRNA-specific 2-thiouridylase (mnmA) ,
IadA ,
tRNA m5U54 methyltransferase (trmA) ,
Mlc titration factor (mtfA) ,
TyrB ,
ClpP ,
glutamyl-Q tRNAAsp synthetase (gluQ) ,
leucyl, phenylalanyl-tRNA-protein transferase (aat) ,
regulatory ATPase (ravA) ,
N-acetylneuraminate lyase (nanA) ,
L-aspartate oxidase (nadB) ,
L,D-carboxypeptidase A (ldcA) ,
DNA polymerase IV (Y-family DNA polymerase; translesion DNA synthesis) (dinB) ,
23S rRNA m1G745 methyltransferase (rlmA) ,
formyltetrahydrofolate deformylase (purU) ,
23S rRNA m2G1835 methyltransferase (rlmG) ,
23S rRNA 2'-O-ribose U2552 methyltransferase (rlmE) ,
guanylate kinase (gmk) ,
PepP ,
protease III (ptrA) ,
pyrimidine nucleotidase (yjjG) ,
MutH ,
16S rRNA m7G527 methyltransferase (rsmG) ,
tRNA (Gm18) 2'-O-methyltransferase (trmH) ,
RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication (rnhA) ,
RNAse HII, degrades RNA of DNA-RNA hybrids (rnhB) ,
autoinducer-2 kinase (lsrK) ,
m7GTP pyrophosphatase (yceF) ,
AidB ,
deoxyguanosine triphosphate triphosphohydrolase (dgt) ,
Hyi ,
ATP-dependent RNA helicase, specific for 23S rRNA (dbpA) ,
23S rRNA 2'-O-ribose C2498 methyltransferase (rlmM) ,
DNA polymerase III, α subunit (dnaE) ,
DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease (polA) ,
nitric oxide dioxygenase (hmp) ,
DNA gyrase, subunit B (gyrB) ,
DNA gyrase, subunit A ,
hydrogen sulfide synthesis [multifunctional] (sseA) ,
NAD(P)H:quinone oxidoreductase (wrbA) ,
Eda ,
catalase II (katE) ,
protein involved in modification of U34 in tRNA (mnmG) ,
GTPase, involved in modification of U34 in tRNA (mnmE) ,
stationary phase mismatch/uracil DNA glycosylase (mug) ,
Fsa (fsaA) ,
fructose 6-phosphate aldolase 2 (fsaB) ,
16S rRNA m5C1407 methyltransferase (rsmF) ,
cAMP phosphodiesterase (cpdA) ,
23S rRNA pseudouridine synthase (rluD) ,
oligoribonuclease monomer (orn) ,
Lon ,
KpLE2 phage-like element; 2-dehydro-3-deoxy-D-pentonate aldolase (yjhH) ,
CP4-6 prophage; probable 2-keto-3-deoxygluconate aldolase (yagE) ,
methylglyoxal synthase (mgsA) ,
pimeloyl-[acp] methyl ester esterase (bioH) ,
acrylyl-CoA reductase (yhdH) ,
xanthosine phosphorylase (xapA) ,
methionine-oxo-acid transaminase, PLP-dependent (ybdL) ,
ThiI ,
tRNA C32 thiolase (ttcA) ,
galactoside O-acetyltransferase monomer (lacA) ,
formamidopyrimidine DNA glycosylase (mutM) ,
tRNAMet cytidine acetyltransferase (tmcA) ,
enterochelin esterase (fes) ,
ProA ,
ProB ,
SpeG ,
protein interacts with RecR and possibly RecF proteins (recO) ,
recombination and repair (recR) ,
ssDNA and dsDNA binding, ATP binding (recF) ,
16S rRNA m62A1518,m62A1519 dimethyltransferase (rsmA) ,
branch migration of Holliday structures; repair (ruvA) ,
branch migration of Holliday structures; repair helicase (ruvB) ,
Holliday junction nuclease; resolution of structures; repair (ruvC) ,
peptidase T ,
tRNA(i6A37) synthase (miaA) ,
ferritin iron storage protein (ftnA) ,
dTDP-4-dehydrorhamnose 3,5-epimerase (rfbC) ,
peptidyl-tRNA hydrolase (pth) ,
peptidyl-tRNA hydrolase, ribosome rescue factor (arfB) ,
pyridine nucleotide transhydrogenase, soluble (sthA) ,
citrate lyase, citryl-ACP lyase β subunit (citE) ,
citrate lyase, citrate-ACP transferase α subunit (citF) ,
citrate lyase, acyl carrier γ subunit (citD) ,
16S rRNA m2G1207 methyltransferase (rsmC) ,
16S rRNA m4C1402 methyltransferase (rsmH) ,
RNase III (rnc) ,
peptidase E, a dipeptidase where amino-terminal residue is aspartate (pepE) ,
dCMP phosphohydrolase (yfbR) ,
ribosomal protein S12 D88 methylthiotransferase (rimO) ,
adenylate cyclase (cyaA) ,
β-phosphoglucomutase (ycjU) ,
protein-lysine deacetylase and desuccinylase (cobB) ,
chaperone for [Fe-S] cluster biosynthesis (hscA) ,
23S rRNA 2'-O-ribose G2251 methyltransferase monomer (rlmB) ,
16S rRNA pseudouridine 516 synthase (rsuA) ,
L-isoaspartate protein carboxylmethyltransferase type II (pcm) ,
ssDNA/RNA exonuclease, 3' → 5' specific (tatD) ,
broad specificity 5'(3')-nucleotidase and polyphosphatase (umpG) ,
dipeptidyl carboxypeptidase II (dcp) ,
adenosine-3'(2'),5'-bisphosphate nucleotidase (cysQ) ,
3-ketoacyl-CoA thiolase (fadA) ,
DNA topoisomerase III (topB) ,
Autoinducer 2-degrading protein (lsrG) ,
RNase R (rnr) ,
fused 5-methylaminomethyl-2-thiouridine-forming methyltransferase and FAD-dependent demodification enzyme (mnmC) ,
L-cysteine desulfurase (sufS) ,
Qor ,
fused tRNA nucleotidyltransferase / 2',3'-cyclic phosphodiesterase / 2' nucleotidase and phosphatase (cca) ,
23S rRNA m3Ψ1915 methyltransferase (rlmH) ,
DNA primase (dnaG) ,
methylglyoxal reductase [multifunctional] (dkgB) ,
tRNA m6A37 methyltransferase (yfiC) ,
lysyl-tRNA synthetase (lysU) ,
aminopeptidase B (pepB) ,
N-acetyl-anhydromuramyl-L-alanine-amidase (ampD) ,
D-Tyr-tRNATyr deacylase (dtd) ,
RNA 3'-terminal phosphate cyclase (rtcA) ,
16S rRNA m2G1516 methyltransferase (rsmJ) ,
enoyl-[acyl-carrier-protein] reductase subunit (fabI) ,
cysteine desulfurase monomer (iscS) ,
serine hydroxymethyltransferase (glyA) ,
uracil-DNA glycosylase (ung) ,
sugar phosphatase (ybiV) ,
sugar phosphatase (yidA) ,
tRNA pseudouridine synthase I (truA) ,
16S rRNA m3U1498 methyltransferase monomer (rsmE) ,
p-aminobenzoyl-glutamate hydrolase subunit A (abgA) ,
p-aminobenzoyl-glutamate hydrolase subunit B (abgB) ,
ribosomal-protein-S18-alanine N-acetyltransferase (rimI) ,
ribosomal-protein-S5-alanine N-acetyltransferase (rimJ) ,
aminopeptidase A/I (pepA) ,
nitrite reductase ,
nitrite reductase, large subunit (nirB) ,
nitrite reductase, small subunit (nirD) ,
3-methyl-adenine DNA glycosylase II, inducible (alkA) ,
FabB ,
maltodextrin glucosidase (malZ) ,
lipid hydroperoxide peroxidase (tpx) ,
thiol peroxidase (bcp) ,
ribonuclease II (rnb) ,
10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase (fmt) ,
ThrB ,
proofreading thioesterase in enterobactin biosynthesis (entH) ,
CheB ,
flavodoxin NADP+ reductase (fpr) ,
NrdG ,
AlkB repair system for alkylated DNA and RNA ,
lipoyl(octanoyl) transferase (lipB) ,
GlpE ,
tryptophan synthase, β subunit (trpB) ,
tryptophan synthase, α subunit (trpA) ,
23S rRNA m5C1962 methyltransferase monomer (rlmI) ,
lipoyl-protein ligase A (lplA) ,
O6-alkylguanine-DNA-alkyltransferase (ogt) ,
Ada DNA-binding transcriptional dual regulator ,
AspC ,
AceK ,
endonuclease V (deoxyinosine 3'-endonuclease) (nfi) ,
nucleoside triphosphate pyrophosphatase (yhdE) ,
2-keto-3-deoxy-L-rhamnonate aldolase (yfaU) ,
serine/threonine protein kinase (rdoA) ,
maltodextrin phosphorylase monomer (malP) ,
methyltransferase for 50S ribosomal subunit protein L11 (prmA) ,
RNase I, cleaves phosphodiester bond between any two nucleotides ,
tellurite methyltransferase (tehB) ,
ribonucleoside diphosphate reductase 1, β subunit, ferritin-like (nrdB) ,
NrdF ,
NrdE ,
[protein-PII] uridylyltransferase (glnD) ,
deoxyribodipyrimidine photolyase (photoreactivation) (phr) ,
excision nuclease subunit A (uvrA) ,
excinuclease ABC, subunit C; repair of UV damage to DNA (uvrC) ,
DNA repair; excision nuclease subunit B (uvrB) ,
alkyl hydroperoxide reductase, AhpC component ,
D-malate / 3-isopropylmalate dehydrogenase (decarboxylating) (dmlA) ,
GhrB ,
glyoxylate reductase / hydroxypyruvate reductase (ghrA) ,
RNA polymerase, α subunit (rpoA) ,
RNA polymerase, β' subunit (rpoC) ,
RNA polymerase, β subunit (rpoB) ,
16S rRNA 2'-O-ribose C1402 methyltransferase (rsmI) ,
isopentenyl-adenosine A37 tRNA methylthiolase (miaB) ,
tRNA (cytidine/uridine-2'-O)-ribose methyltransferase (trmL) ,
5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase (ybjI) ,
lipid kinase (yegS) ,
GuaC ,
Eno ,
polynucleotide phosphorylase monomer (pnp) ,
RNase E (rne) ,
glycerophosphodiester phosphodiesterase, cytosolic (ugpQ) ,
oligopeptidase A (prlC) ,
γ-glutamyl-γ-aminobutyraldehyde dehydrogenase (puuC) ,
fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase (rlmL) ,
LtaE ,
poly(A) polymerase I (pcnB) ,
methylglyoxal reductase [multifunctional] (dkgA) ,
23S rRNA m2A2503 methyltransferase and tRNA m2A37 methyltransferase (rlmN) ,
tRNA Cm32/Um32 methyltransferase (trmJ) ,
8-oxo-dGTP diphosphatase (mutT) ,
diadenosine tetraphosphatase (apaH) ,
GTPase associated with the 50S subunit of the ribosome (hflX) ,
selenocysteyl-tRNA-specific translation elongation factor (selB) ,
FKBP-type peptidyl prolyl cis-trans isomerase (slyD) ,
FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (fklB) ,
peptidyl-prolyl cis-trans isomerase B (rotamase B) (ppiB) ,
peptidyl-prolyl cis-trans isomerase C (rotamase C) (ppiC) ,
peptidyl-prolyl cis-trans isomerase (fkpB) ,
chaperone protein Tig; trigger factor ,
EntE ,
phenylhydantoinase (hyuA) ,
NADH-dependent dihydropyrimidine dehydrogenase subunit (preA) ,
Ppa ,
16S rRNA m5C967 methyltransferase (rsmB) ,
tRNA m1G37 methyltransferase (trmD) ,
valine-pyruvate aminotransferase (avtA) ,
exonuclease VII, small subunit (xseB) ,
exonuclease VII, large subunit (xseA) ,
pyridoxal phosphatase / fructose 1,6-bisphosphatase (ybhA) ,
phosphosugar phosphatase (yigL) ,
pyridoxal phosphatase / HMP-PP hydrolase (cof) ,
inositol monophosphatase (suhB) ,
amylomaltase (malQ) ,
monoacetylchitobiose-6-phosphate hydrolase (chbF) ,
MetB ,
ferric reductase, NADPH-dependent (yqjH) ,
Ndk ,
EF-P-lysine lysyltransferase (epmA) ,
LptB ,
predicted PTS permease - CmtB subunit ,
chitobiose PTS permease - ChbB subunit ,
chitobiose PTS permease - ChbA subunit ,
sorbitol PTS permease - SrlB subunit ,
galactitol PTS permease - GatA subunit ,
galactitol PTS permease - GatB subunit ,
L-ascorbate PTS permease - UlaB subunit ,
Enzyme IIAGlc; Crr ,
mannose PTS permease - ManX subunit ,
murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit (oppD) ,
putrescine ABC transporter - ATP binding subunit (potG) ,
ribose ABC transporter - putative ATP binding subunit (rbsA) ,
dipeptide ABC transporter - putative ABC binding subunit (dppF) ,
dipeptide ABC transporter - putative ATP binding subunit (dppD) ,
xylose ABC transporter - ATP binding subunit (xylG) ,
D-allose ABC transporter - ATP binding subunit (alsA) ,
L-methionine / D-methionine ABC transporter - ATP binding subunit (metN) ,
AgaX (yadI) ,
predicted PTS permease - SgcA subunit ,
DNA polymerase III, γ subunit (dnaX) ,
chaperone protein DnaK ,
chaperone protein DnaJ ,
30S ribosomal subunit protein S1 (rpsA) ,
Superoxide dismutase [Cu-Zn] (SOD1) ,
Dihydropyrimidine dehydrogenase [NADP+] (DPYD) ,
Aldo-keto reductase family 1 member C1 (AKR1C1) ,
Aldo-keto reductase family 1 member C4 (AKR1C4) ,
Maleylacetoacetate isomerase (GSTZ1) ,
mitogen-activated protein kinase 14 (MAPK14) ,
tRNAsec (selC) ,
Arginase-1 (ARG1) ,
argininosuccinate lyase (ASL) ,
Argininosuccinate synthase (ASS1) ,
Pterin-4-alpha-carbinolamine dehydratase (PCBD1) ,
lysine-8-amino-7-oxononanoate aminotransferase (bioK) ,
tRNAsec ,
phosphoribosylformylglycinamidine synthase (PFAS) ,
trifunctional purine biosynthetic protein adenosine-3 (GART) ,
aminotransferase (AT1G80360.1) ,
phosphoglucomutase-1 (PGM1) ,
phosphoenolpyruvate-protein phosphotransferase PtsP, enzyme INtr ,
hematopoietic prostaglandin D synthase (HPGDS) ,
prostaglandin G/H synthase 2 (PTGS2) ,
Fructose-bisphosphate aldolase B (ALDOB) ,
sulfur acceptor that activates SufS cysteine desulfurase ,
cytosolic thymidine kinase monomer (TK1) ,
ribonucleoside-diphosphate reductase small subunit (RRM2) ,
protein chain elongation factor EF-P (efp) ,
2'-5'-oligoadenylate synthetase 1 monomer (OAS1) ,
xanthine dehydrogenase ,
phosphoenolpyruvate carboxylase ,
guanine deaminase ,
β-alanine N-methyltransferase ,
betaine-homocysteine S-methyltransferase ,
S-formylglutathione hydrolase ,
4-hydroxyphenylpyruvate dioxygenase ,
cytoplasmic glycerol-3-phosphate acyltransferase ,
UDP-glucose pyrophosphorylase ,
sucrose-phosphate phosphatase ,
serine acetyltransferase ,
O-acetylserine (thiol) lyase ,
5'-methylthioadenosine phosphorylase ,
26-kDa subunit (prdB) ,
N-methyltransferase subunit (BANMT1) ,
polyamine oxidase (propane-1,3-diamine forming) (MPAO) ,
mannose-1-phosphate phosphatase ,
phosphomannose isomerase ,
pyruvate decarboxylase ,
phosphoenolpyruvate carboxylase (pep1) ,
ethanolamine N-methyltransferase ,
2'-hydroxydaidzein reductase / 2-hydroxydaidzein reductase ,
(+)-pulegone reductase (PR) ,
Erg20 (FPP1) ,
IPP isomerase (IDI1) ,
phosphomevalonate kinase (erg8) ,
Erg12 ,
Erg10 ,
glyoxalase II (cytoplasmic) (glo2) ,
phenylacrylate decarboxylase (pad1) ,
isoflavone-4'-O-methyltransferase ,
isoflavone-4'-O-methyltransferase ,
monodehydroascorbate reductase ,
L-ascorbate peroxidase (cytosolic) (APX1) ,
ascorbate peroxidase ,
chalcone reductase (CHR7) ,
phosphoribosylformylglycinamidine synthetase (ade6) ,
cytosolic glucose-6-phosphate isomerase (GPIS) ,
farnesyl diphosphatase (Pho8) ,
caffeine demethylase ,
exopolygalacturonate lyase W (pelW) ,
oligogalacturonate lyase (ogl) ,
catechol O-methyltransferase (Comt) ,
chalcone 4'-O-glucosyltransferase (4'CGT) ,
S-adenosylmethionine synthetase (SAMS1) ,
theobromine synthase (CaMXMT1) ,
UDPG:coniferyl alcohol glucosyltransferase ,
5-epi-aristolochene synthase (TEAS) ,
adenylate isopentenyltransferase (IPT4) ,
jasmonoyl-amino acid synthetase (JAR1) ,
cytoplasmic enolase (LOC2) ,
tRNA dimethylallyltransferase (IPT2) ,
tryptophan aminotransferase (TAA1) ,
fructose-1,6-bisphosphatase (FINS1) ,
indole-3-acetamide amidohydrolase (AT1G08980) ,
protoporphyrinogen oxidase (hemY) ,
lipoate-protein ligase (lplJ) ,
lipoyl synthase (lipoic acid synthetase) (lipA) ,
glyceraldehyde-3-phosphate dehydrogenase monomer (GAPDH) ,
thiazole synthase (thiG) ,
ThiI ,
glycine oxidase monomer (thiO) ,
retinal dehydrogenase 1 (ALDH1A1) ,
GTP cyclohydrolase I (folEA) ,
5S ribosomal RNA (rrfA) ,
23S ribosomal RNA (rrlA) ,
16S ribosomal RNA (rrsA) ,
CAD protein

Unification Links: GO:0005737


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Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Mon Dec 22, 2014, biocyc14.