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Pathway Tools
Intro Tutorial
discounted registration ends Sept 5, 2015
Pathway Tools
Intro Tutorial
discounted registration ends Sept 5, 2015
Pathway Tools
Intro Tutorial
discounted registration ends Sept 5, 2015
Pathway Tools
Intro Tutorial
discounted registration ends Sept 5, 2015
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MetaCyc Gene-Ontology-Terms Class: GO:0005737 - cytoplasm

Definition: All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Parent Classes:
GO:0044424 - intracellular part

Part Of:
GO:0005622 - intracellular

Parts:
GO:0005794 - Golgi apparatus (24) ,
GO:0005840 - ribosome (56) ,
GO:0044444 - cytoplasmic part (2716) ,
GO:0045239 - tricarboxylic acid cycle enzyme complex (6) ,
GO:0042579 - microbody (81) ,
GO:0005783 - endoplasmic reticulum (84) ,
GO:0005739 - mitochondrion (150) ,
GO:0045254 - pyruvate dehydrogenase complex (4) ,
GO:0045248 - cytosolic oxoglutarate dehydrogenase complex (1) ,
GO:0005960 - glycine cleavage complex (4) ,
GO:0005829 - cytosol (1706)

Term Members:
sulfur transfer protein (tusE) ,
biotin carboxyl carrier protein (accB) ,
sulfur transfer protein (tusA) ,
thioredoxin 1 (trxA) ,
reduced thioredoxin 2 (trxC) ,
PrlF antitoxin (sohA) ,
D-Ala-D-Ala dipeptidase (ddpX) ,
scaffold protein for iron-sulfur cluster assembly (iscU) ,
putative protein secretion protein for export (gspE) ,
protein chain elongation factor EF-P (efp) ,
30S ribosomal subunit protein S1 (rpsA) ,
frataxin CyaY ,
predicted PTS permease - SgcB subunit ,
RNA polymerase, sigma 70 (sigma D) factor (rpoD) ,
RNA polymerase, sigma S (sigma 38) factor (rpoS) ,
RNA polymerase, sigma 24 (sigma E) factor (rpoE) ,
RNA polymerase, sigma 28 (sigma F) factor (fliA) ,
RNA polymerase, sigma 32 (sigma H) factor (rpoH) ,
RNA polymerase, sigma 19 factor (fecI) ,
flavorubredoxin (norV) ,
RhlB ,
sulfur transfer protein complex, TusD subunit ,
sulfur transfer protein complex, TusC subunit ,
sulfur transfer protein complex, TusB subunit ,
CysB ,
nucleotide exchange factor GrpE ,
chaperone protein DnaK ,
chaperone protein DnaJ ,
DNA polymerase III, ψ subunit (holD) ,
DNA polymerase III, χ subunit (holC) ,
DnaN ,
DNA polymerase III, θ subunit (holE) ,
AgaX (yadI) ,
predicted PTS permease - FrwB subunit ,
fructose PTS permease - FruB subunit ,
predicted PTS permease - FrvA subunit ,
predicted PTS permease - SgcA subunit ,
apo-[acyl carrier protein] (acpP) ,
PurF ,
phosphoribosylamine-glycine ligase (purD) ,
phosphoribosylformylglycinamide synthetase (purL) ,
PurM ,
FabH ,
phosphoribosylglycinamide formyltransferase 1 (purN) ,
Amn ,
FabA ,
glutamate-pyruvate aminotransferase (alaA) ,
glutamate-pyruvate aminotransferase (alaC) ,
phosphopentomutase (deoB) ,
deoxyribose-phosphate aldolase (deoC) ,
AccC ,
acetyl-CoA carboxyltransferase, α subunit (accA) ,
acetyl-CoA carboxyltransferase, β subunit (accD) ,
LpxB ,
UDP-2,3-diacylglucosamine hydrolase (lpxH) ,
LpxD ,
UDP-3-O-acyl-N-acetylglucosamine deacetylase (lpxC) ,
LpxA ,
3-deoxy-D-manno-octulosonate cytidylyltransferase (kdsB) ,
3-deoxy-D-manno-octulosonate 8-phosphate synthase (kdsA) ,
D-arabinose 5-phosphate isomerase (gutQ) ,
pantothenate synthetase monomer (panC) ,
2-dehydropantoate 2-reductase (panE) ,
3-methyl-2-oxobutanoate hydroxymethyltransferase monomer (panB) ,
pantothenate kinase monomer (coaA) ,
pantetheine-phosphate adenylyltransferase monomer (coaD) ,
dephospho-CoA kinase (coaE) ,
Dfp ,
PanD proenzyme, π protein ,
3-dehydroquinate synthase (aroB) ,
AroH ,
ArgA ,
acetylglutamate kinase monomer (argB) ,
N-acetylglutamylphosphate reductase (argC) ,
ArgE ,
Asd ,
UDP-N-acetylglucosamine enolpyruvoyl transferase (murA) ,
UDP-N-acetylenolpyruvoylglucosamine reductase (murB) ,
D-alanyl-D-alanine-adding enzyme (murF) ,
UDP-N-acetylmuramate-alanine ligase (murC) ,
UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase (murD) ,
UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase (murE) ,
D-alanine-D-alanine ligase A (ddlA) ,
D-alanine-D-alanine ligase B (ddlB) ,
Epd ,
PdxJ ,
erythronate-4-phosphate dehydrogenase (pdxB) ,
PdxA ,
UDP-N-acetylglucosamine 2-epimerase (wecB) ,
Adi (adiA) ,
glutamate decarboxylase B subunit (gadB) ,
carbonic anhydrase monomer (cynT) ,
cyanase monomer (cynS) ,
XylA ,
GTP cyclohydrolase I monomer (folE) ,
hydrogenase 2 - [Fe-S] binding, ferredoxin-type component HybA ,
3-hydroxy-2,4-pentadione 5-phosphate thiolase (lsrF) ,
autoinducer-2 kinase (lsrK) ,
2,3-diketo-L-gulonate reductase monomer (yiaK) ,
L-ribulose 5-phosphate 4-epimerase monomer (araD) ,
L-ascorbate 6-phosphate lactonase (ulaG) ,
GlpD ,
cyclopropane fatty acyl phospholipid synthase (cfa) ,
glyoxalase III, Hsp31 molecular chaperone (hchA) ,
4-aminobutyrate aminotransferase (puuE) ,
GabD ,
ornithine decarboxylase, biosynthetic (speC) ,
ornithine decarboxylase, degradative (speF) ,
argininosuccinate lyase (argH) ,
ArgI ,
ArgF ,
carbamoyl phosphate synthetase, α chain (carA) ,
carbamoyl phosphate synthetase, β chain ,
Dcd ,
Dut ,
thymidylate synthase (thyA) ,
dTMP kinase (tmk) ,
AnsA ,
aspartate carbamoyltransferase, PyrI subunit ,
aspartate carbamoyltransferase, PyrB subunit ,
PyrC ,
PyrE ,
PyrF ,
dihydroorotate dehydrogenase, type 2 (pyrD) ,
UMP kinase (pyrH) ,
AsnA ,
AsnB ,
Udp ,
uridine kinase / cytidine kinase (udk) ,
thymidine kinase / deoxyuridine kinase (tdk) ,
FadD ,
FadI monomer ,
FadJ monomer ,
ribonucleoside hydrolase 1 (pyrimidine-specific) (rihA) ,
CadA ,
LdcC ,
SpeE ,
isopentenyl diphosphate isomerase (idi) ,
phosphoribosylglycinamide formyltransferase 2 (purT) ,
thioredoxin reductase monomer (trxB) ,
glutathione reductase (NADPH) (gor) ,
phosphoserine phosphatase (serB) ,
MhpD ,
homoserine O-succinyltransferase (metA) ,
cobalamin-dependent methionine synthase ,
selenide, water dikinase (selD) ,
selenocysteine synthase (selA) ,
propionyl-CoA synthetase (prpE) ,
2-methylisocitrate lyase (prpB) ,
threonine synthase (thrC) ,
DapF ,
N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (argD) ,
SerC ,
tetrahydrodipicolinate succinylase (dapD) ,
4-hydroxy-tetrahydrodipicolinate synthase (dapA) ,
4-hydroxy-tetrahydrodipicolinate reductase (dapB) ,
SodA ,
SodB ,
LeuB ,
2-isopropylmalate synthase (leuA) ,
TdcB ,
IlvA ,
3-phosphoshikimate-1-carboxyvinyltransferase (aroA) ,
shikimate kinase II (aroL) ,
PheA ,
TyrA ,
FrmA ,
D-serine ammonia-lyase (dsdA) ,
L-xylulose kinase (lyxK) ,
N-acetylmannosamine kinase (nanK) ,
mannose-6-phosphate isomerase (manA) ,
L-fuculokinase (fucK) ,
FucI ,
L-fucose mutarotase (fucU) ,
quinolinate phosphoribosyltransferase (decarboxylating) monomer (nadC) ,
NadA ,
NadR DNA-binding transcriptional repressor and NMN adenylyltransferase ,
phosphoglucomutase (pgm) ,
ribokinase (rbsK) ,
ribose pyranase (rbsD) ,
NAD kinase monomer (nadK) ,
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (gpmM) ,
phosphoglycerate kinase (pgk) ,
glyceraldehyde 3-phosphate dehydrogenase-A monomer (gapA) ,
triosephosphate isomerase monomer (tpiA) ,
fructose bisphosphate aldolase monomer (fbaB) ,
fructose-1,6-bisphosphatase monomer (fbp) ,
fructose 1,6-bisphosphatase II (glpX) ,
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase monomer (gpmA) ,
methionine adenosyltransferase (metK) ,
chorismate lyase (ubiC) ,
CysH ,
GarL ,
rhamnulose-1-phosphate aldolase monomer (rhaD) ,
L-rhamnulose kinase (rhaB) ,
L-rhamnose isomerase (rhaA) ,
L-rhamnose mutarotase ,
HisB ,
imidazole glycerol phosphate synthase, HisF subunit ,
imidazole glycerol phosphate synthase, HisH subunit ,
N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase (hisA) ,
phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase (hisI) ,
HisG ,
N5-carboxyaminoimidazole ribonucleotide synthetase monomer (purK) ,
PurA ,
adenylate kinase (adk) ,
ribose-phosphate diphosphokinase (prs) ,
ribose 1,5-bisphosphokinase (phnN) ,
GlmU ,
GlmS ,
phosphoglucosamine mutase (glmM) ,
Pgi ,
L-arabinose isomerase monomer (araA) ,
L-ribulokinase monomer (araB) ,
FolP ,
taurine dioxygenase monomer (tauD) ,
UDP-glucose 4-epimerase monomer (galE) ,
Fcl ,
5-keto-D-gluconate 5-reductase (idnO) ,
2-hydroxy-6-ketonona-2,4-dienedioate hydrolase (mhpC) ,
hydroxymethylbilane synthase (hemC) ,
glutamate-1-semialdehyde aminotransferase (hemL) ,
glutamyl-tRNA synthetase (gltX) ,
thiamine phosphate synthase (thiE) ,
ThiG ,
GdhA ,
glutamate synthase, small subunit (gltD) ,
glutamate synthase, large subunit (gltB) ,
molybdopterin adenylyltransferase (mog) ,
molybdopterin molybdenumtransferase (moeA) ,
UDP-N-acetylmuramate:L-alanyl-γ-D-glutamyl-meso-diaminoheptanedioate-D-alanine ligase [multifunctional] (mpl) ,
GlnA ,
malate synthase A (aceB) ,
malate synthase G (glcB) ,
tryptophanase (tnaA) ,
CysM ,
O-acetylserine sulfhydrylase A (cysK) ,
serine acetyltransferase monomer (cysE) ,
MetC ,
AcpS ,
GlpK ,
malate dehydrogenase (mdh) ,
fumarase C monomer (fumC) ,
succinyl-CoA synthetase, β subunit ,
succinyl-CoA synthetase, α subunit (sucD) ,
Icd ,
citrate synthase monomer (gltA) ,
2-methylcitrate synthase (prpC) ,
aconitate hydratase 1 (acnA) ,
fused PutA transcriptional repressor / proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase ,
pyrroline-5-carboxylate reductase monomer (proC) ,
glycogen synthase (glgA) ,
1,4-α-glucan branching enzyme (glgB) ,
GlgC ,
Tdh ,
Kbl ,
Pta ,
acetate kinase (ackA) ,
geranyl diphosphate synthase / farnesyl diphosphate synthase (ispA) ,
subunit of undecaprenyl diphosphate synthase (ispU) ,
glycerol-3-phosphate dehydrogenase (gpsA) ,
allantoinase monomer (allB) ,
S-ureidoglycine aminohydrolase (allE) ,
ureidoglycolate dehydrogenase (allD) ,
cytoplasmic trehalase (treF) ,
trehalose-6-phosphate hydrolase (treC) ,
glucokinase (glk) ,
Gpp ,
GDP pyrophosphokinase / GTP pyrophosphokinase (relA) ,
guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional] (spoT) ,
PssA ,
glycine cleavage system H protein (gcvH) ,
E3 monomer (lpd) ,
bifunctional folylpolyglutamate synthetase / dihydrofolate synthetase (folC) ,
transaldolase B (talB) ,
arginyl-tRNA synthetase (argS) ,
cysteinyl-tRNA synthetase (cysS) ,
glutaminyl-tRNA synthetase (glnS) ,
isoleucyl-tRNA synthetase (ileS) ,
leucyl-tRNA synthetase (leuS) ,
valyl-tRNA synthetase (valS) ,
alanyl-tRNA synthetase (alaS) ,
asparaginyl-tRNA synthetase (asnS) ,
aspartyl-tRNA synthetase (aspS) ,
tyrosyl-tRNA synthetase (tyrS) ,
tryptophanyl-tRNA synthetase (trpS) ,
threonyl-tRNA synthetase (thrS) ,
seryl-tRNA synthetase (serS) ,
prolyl-tRNA synthetase (proS) ,
phenylalanyl-tRNA synthetase β-chain (pheT) ,
phenylalanyl-tRNA synthetase α-chain (pheS) ,
lysyl tRNA synthetase (LysRSs), constitutive (lysS) ,
histidyl-tRNA synthetase (hisS) ,
glycyl-tRNA synthetase, α subunit (glyQ) ,
glycyl-tRNA synthetase, β subunit (glyS) ,
methionyl-tRNA synthetase (metG) ,
uroporphyrinogen decarboxylase (hemE) ,
ferrochelatase (hemH) ,
EfeB dimer ,
heme-containing peroxidase/deferrochelatase (efeB) ,
porphyrinogen peroxidase (yfeX) ,
coproporphyrinogen III oxidase (hemF) ,
coproporphyrinogen III dehydrogenase (hemN) ,
7-cyano-7-deazaguanine reductase (queF) ,
tRNA-guanine transglycosylase monomer (tgt) ,
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (queA) ,
epoxyqueuosine reductase (queG) ,
FabZ ,
dethiobiotin synthetase monomer (bioD) ,
adenosylmethionine-8-amino-7-oxononanoate aminotransferase monomer (bioA) ,
AtoB ,
2-ketobutyrate formate-lyase/pyruvate formate-lyase 4, inactive (tdcE) ,
PflB ,
lipoyl synthase (lipA) ,
6-phosphofructokinase-1 monomer (pfkA) ,
murein tripeptide amidase A (mpaA) ,
CaiB monomer ,
UDP-L-Ara4O C-4" transaminase (arnB) ,
cytidylate kinase (cmk) ,
adenine phosphoribosyltransferase (apt) ,
hypoxanthine-guanine phosphoribosyltransferase (hpt) ,
D,D-heptose 1,7-bisphosphate phosphatase (gmhB) ,
D-sedoheptulose 7-phosphate isomerase (lpcA) ,
galactokinase (galK) ,
galactose-1-phosphate uridylyltransferase (galT) ,
galactose-1-epimerase (galM) ,
phosphoenolpyruvate carboxykinase (ATP) (pck) ,
GlgP ,
Gst (gstA) ,
3-methyl-adenine DNA glycosylase II, inducible (alkA) ,
hybrid-cluster protein (hcp) ,
2,3-diaminopropionate ammonia-lyase (ygeX) ,
ribosomal protein S12 D88 methylthiotransferase (rimO) ,
methylglyoxal synthase (mgsA) ,
NAD(P)H:quinone oxidoreductase (wrbA) ,
pimeloyl-[acp] methyl ester esterase (bioH) ,
SpeG ,
16S rRNA m62A1518,m62A1519 dimethyltransferase (rsmA) ,
AspC ,
isopentenyl-adenosine A37 tRNA methylthiolase (miaB) ,
endonuclease V (deoxyinosine 3'-endonuclease) (nfi) ,
GTPase associated with the 50S subunit of the ribosome (hflX) ,
selenocysteyl-tRNA-specific translation elongation factor (selB) ,
phospho-AI-2 isomerase (lsrG) ,
m7GTP pyrophosphatase (yceF) ,
methionine-oxo-acid transaminase, PLP-dependent (ybdL) ,
16S rRNA m2G1207 methyltransferase (rsmC) ,
formyltetrahydrofolate deformylase (purU) ,
16S rRNA m4C1402 methyltransferase (rsmH) ,
fused tRNA nucleotidyltransferase / 2',3'-cyclic phosphodiesterase / 2' nucleotidase and phosphatase (cca) ,
guanylate kinase (gmk) ,
RNase R (rnr) ,
ProA ,
ProB ,
23S rRNA 2'-O-ribose G2251 methyltransferase monomer (rlmB) ,
tRNA pseudouridine synthase I (truA) ,
methylglyoxal reductase [multifunctional] (dkgB) ,
adenosine-3'(2'),5'-bisphosphate nucleotidase (cysQ) ,
ThrB ,
16S rRNA m2G1516 methyltransferase (rsmJ) ,
β-phosphoglucomutase (ycjU) ,
catalase II (katE) ,
xanthosine phosphorylase (xapA) ,
pyridine nucleotide transhydrogenase, soluble (sthA) ,
ATP-dependent RNA helicase, specific for 23S rRNA (dbpA) ,
23S rRNA m3Ψ1915 methyltransferase (rlmH) ,
tryptophan synthase, β subunit (trpB) ,
tryptophan synthase, α subunit (trpA) ,
tRNA m1G37 methyltransferase (trmD) ,
exonuclease VII, small subunit (xseB) ,
exonuclease VII, large subunit (xseA) ,
pyridoxal phosphatase / fructose 1,6-bisphosphatase (ybhA) ,
pyridoxal phosphatase / HMP-PP hydrolase (cof) ,
monoacetylchitobiose-6-phosphate hydrolase (chbF) ,
tRNAMet cytidine acetyltransferase (tmcA) ,
nitrate reductase A, β subunit (narH) ,
nitrate reductase Z, β subunit (narY) ,
tellurite methyltransferase (tehB) ,
sugar phosphatase (ybiV) ,
sugar phosphatase (yidA) ,
phosphosugar phosphatase (yigL) ,
16S rRNA m3U1498 methyltransferase monomer (rsmE) ,
23S rRNA pseudouridine synthase (rluC) ,
Mlc titration factor (mtfA) ,
RNase D (rnd) ,
nitrite reductase - NADH dependent ,
nitrite reductase, large subunit (nirB) ,
nitrite reductase, small subunit (nirD) ,
β-N-acetylhexosaminidase (nagZ) ,
Qor ,
galactoside O-acetyltransferase monomer (lacA) ,
TyrB ,
5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase (ybjI) ,
lipid kinase (yegS) ,
23S rRNA m5C1962 methyltransferase monomer (rlmI) ,
protein-lysine deacetylase and desuccinylase (cobB) ,
L-aspartate oxidase (nadB) ,
D-malate / 3-isopropylmalate dehydrogenase (decarboxylating) (dmlA) ,
fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase (rlmL) ,
16S rRNA 2'-O-ribose C1402 methyltransferase (rsmI) ,
23S rRNA 2'-O-ribose U2552 methyltransferase (rlmE) ,
PepP ,
oligopeptidase A (prlC) ,
adenylate cyclase (cyaA) ,
peptidyl-tRNA hydrolase (pth) ,
peptidyl-tRNA hydrolase, ribosome rescue factor (arfB) ,
tRNA Cm32/Um32 methyltransferase (trmJ) ,
tRNA (Gm18) 2'-O-methyltransferase (trmH) ,
valine-pyruvate aminotransferase (avtA) ,
diadenosine tetraphosphatase (apaH) ,
ribonuclease G (RNAse G) monomer (rng) ,
EF-P-lysine lysyltransferase (epmA) ,
RNA polymerase, α subunit (rpoA) ,
RNA polymerase, β' subunit (rpoC) ,
RNA polymerase, β subunit (rpoB) ,
16S rRNA m5C967 methyltransferase (rsmB) ,
nitric oxide dioxygenase (hmp) ,
tRNA m5U54 methyltransferase (trmA) ,
cAMP phosphodiesterase (cpdA) ,
β-1,6-galactofuranosyltransferase (wbbI) ,
amylomaltase (malQ) ,
L-2-hydroxyglutarate oxidase (lhgO) ,
DNA gyrase, subunit B (gyrB) ,
DNA gyrase, subunit A ,
D-Tyr-tRNATyr deacylase (dtd) ,
poly(A) polymerase I (pcnB) ,
proofreading thioesterase in enterobactin biosynthesis (entH) ,
RNA 3'-terminal phosphate cyclase (rtcA) ,
phenylhydantoinase (hyuA) ,
chito-oligosaccharide mono-deacetylase (chbG) ,
23S rRNA m6A1618 methyltransferase (rlmF) ,
xylulokinase (xylB) ,
23S rRNA pseudouridine synthase (rluD) ,
oligoribonuclease monomer (orn) ,
oligopeptidase B (ptrB) ,
2-keto-3-deoxy-L-rhamnonate aldolase (yfaU) ,
acetyl esterase (aes) ,
MetB ,
ferric reductase, NADPH-dependent (yqjH) ,
FKBP-type peptidyl prolyl cis-trans isomerase (slyD) ,
FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (fklB) ,
peptidyl-prolyl cis-trans isomerase B (rotamase B) (ppiB) ,
peptidyl-prolyl cis-trans isomerase C (rotamase C) (ppiC) ,
peptidyl-prolyl cis-trans isomerase (fkpB) ,
chaperone protein Tig; trigger factor ,
acrylyl-CoA reductase (yhdH) ,
trans-aconitate 2-methyltransferase (tam) ,
8-oxo-dGTP diphosphatase (mutT) ,
IadA ,
Eda ,
formamidopyrimidine DNA glycosylase (mutM) ,
ClpP ,
maltodextrin phosphorylase monomer (malP) ,
γ-glutamyl-γ-aminobutyraldehyde dehydrogenase (puuC) ,
N-acetylneuraminate lyase (nanA) ,
Ndk ,
regulatory ATPase (ravA) ,
methylglyoxal reductase [multifunctional] (dkgA) ,
tRNA-specific 2-thiouridylase (mnmA) ,
23S rRNA m2G1835 methyltransferase (rlmG) ,
glyoxylate reductase / hydroxypyruvate reductase (ghrA) ,
GhrB ,
peptidase T ,
protease III (ptrA) ,
broad specificity 5'(3')-nucleotidase and polyphosphatase (umpG) ,
pyrimidine nucleotidase (yjjG) ,
leucyl, phenylalanyl-tRNA-protein transferase (aat) ,
L,D-carboxypeptidase A (ldcA) ,
16S rRNA m7G527 methyltransferase (rsmG) ,
tRNA (cytidine/uridine-2'-O)-ribose methyltransferase (trmL) ,
GuaC ,
RNase III (rnc) ,
glycerophosphodiester phosphodiesterase, cytosolic (ugpQ) ,
peptidase E, a dipeptidase where amino-terminal residue is aspartate (pepE) ,
Ppa ,
inositol monophosphatase (suhB) ,
LtaE ,
protein involved in modification of U34 in tRNA (mnmG) ,
GTPase, involved in modification of U34 in tRNA (mnmE) ,
alkyl hydroperoxide reductase, AhpC component ,
Hyi ,
23S rRNA 2'-O-ribose C2498 methyltransferase (rlmM) ,
16S rRNA pseudouridine 516 synthase (rsuA) ,
ThiI ,
tRNA C32 thiolase (ttcA) ,
L-isoaspartate protein carboxylmethyltransferase type II (pcm) ,
Eno ,
polynucleotide phosphorylase monomer (pnp) ,
RNase E (rne) ,
nucleoside triphosphate pyrophosphatase (yhdE) ,
ssDNA/RNA exonuclease, 3' → 5' specific (tatD) ,
fused 5-methylaminomethyl-2-thiouridine-forming methyltransferase and FAD-dependent demodification enzyme (mnmC) ,
RNase I, cleaves phosphodiester bond between any two nucleotides ,
lysyl-tRNA synthetase (lysU) ,
dipeptidyl carboxypeptidase II (dcp) ,
serine hydroxymethyltransferase (glyA) ,
3-ketoacyl-CoA thiolase (fadA) ,
DNA topoisomerase III (topB) ,
branch migration of Holliday structures; repair (ruvA) ,
branch migration of Holliday structures; repair helicase (ruvB) ,
Holliday junction nuclease; resolution of structures; repair (ruvC) ,
RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication (rnhA) ,
RNAse HII, degrades RNA of DNA-RNA hybrids (rnhB) ,
DNA polymerase IV (Y-family DNA polymerase; translesion DNA synthesis) (dinB) ,
DNA polymerase III, α subunit (dnaE) ,
DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease (polA) ,
deoxyribodipyrimidine photolyase (photoreactivation) (phr) ,
O6-alkylguanine-DNA-alkyltransferase (ogt) ,
Ada DNA-binding transcriptional dual regulator ,
uracil-DNA glycosylase (ung) ,
NADH-dependent dihydropyrimidine dehydrogenase subunit (preA) ,
NADH-dependent dihydropyrimidine dehydrogenase subunit (preT) ,
protein interacts with RecR and possibly RecF proteins (recO) ,
recombination and repair (recR) ,
ssDNA and dsDNA binding, ATP binding (recF) ,
excision nuclease subunit A (uvrA) ,
excinuclease ABC, subunit C; repair of UV damage to DNA (uvrC) ,
DNA repair; excision nuclease subunit B (uvrB) ,
MutH ,
deoxyguanosine triphosphate triphosphohydrolase (dgt) ,
AidB ,
EntE ,
EntB monomer ,
Fsa (fsaA) ,
fructose 6-phosphate aldolase 2 (fsaB) ,
16S rRNA m5C1407 methyltransferase (rsmF) ,
dCMP phosphohydrolase (yfbR) ,
DNA primase (dnaG) ,
ATP-dependent DNA helicase (recQ) ,
p-aminobenzoyl-glutamate hydrolase subunit A (abgA) ,
p-aminobenzoyl-glutamate hydrolase subunit B (abgB) ,
tRNA m6A37 methyltransferase (yfiC) ,
ribonuclease II (rnb) ,
Lon ,
maltodextrin glucosidase (malZ) ,
KpLE2 phage-like element; 2-dehydro-3-deoxy-D-pentonate aldolase (yjhH) ,
CP4-6 prophage; probable 2-keto-3-deoxygluconate aldolase (yagE) ,
glutamyl-Q tRNAAsp synthetase (gluQ) ,
tRNA(i6A37) synthase (miaA) ,
3-mercaptopyruvate:cyanide sulfurtransferase [multifunctional] (sseA) ,
α-amylase (amyA) ,
bis(molybdenum cofactor) synthase [multifunctional] (mobA) ,
enterochelin esterase (fes) ,
tRNAIle-lysidine synthetase (tilS) ,
23S rRNA m2A2503 methyltransferase and tRNA m2A37 methyltransferase (rlmN) ,
D-cysteine desulfhydrase (dcyD) ,
AlkB repair system for alkylated DNA and RNA ,
stationary phase mismatch/uracil DNA glycosylase (mug) ,
dTDP-4-dehydrorhamnose 3,5-epimerase (rfbC) ,
citrate lyase, citryl-ACP lyase β subunit (citE) ,
citrate lyase, citrate-ACP transferase α subunit (citF) ,
citrate lyase, acyl carrier γ subunit (citD) ,
ferritin iron storage protein (ftnA) ,
cysteine desulfurase monomer (iscS) ,
L-cysteine desulfurase (sufS) ,
lipoate-protein ligase A (lplA) ,
aminopeptidase B (pepB) ,
formate-dependent nitrite reductase, 4Fe-4S subunit (nrfC) ,
flavodoxin NADP+ reductase (fpr) ,
NrdG ,
lipid hydroperoxide peroxidase (tpx) ,
thiol peroxidase (bcp) ,
osmotically inducible peroxiredoxin (osmC) ,
enoyl-[acyl-carrier-protein] reductase subunit (fabI) ,
lipoyl(octanoyl) transferase (lipB) ,
AceK ,
GlpE ,
serine/threonine protein kinase (rdoA) ,
ribosomal-protein-S18-alanine N-acetyltransferase (rimI) ,
ribosomal-protein-S5-alanine N-acetyltransferase (rimJ) ,
aminopeptidase A/I (pepA) ,
FabB ,
CheB ,
ribonucleoside diphosphate reductase 1, β subunit, ferritin-like (nrdB) ,
NrdF ,
NrdE ,
methyltransferase for 50S ribosomal subunit protein L11 (prmA) ,
chitobiose PTS permease - ChbB subunit ,
chitobiose PTS permease - ChbA subunit ,
galactitol PTS permease - GatA subunit ,
galactitol PTS permease - GatB subunit ,
L-ascorbate PTS permease - UlaB subunit ,
mannose PTS permease - ManX subunit ,
Enzyme IIAGlc; Crr ,
predicted PTS permease - CmtB subunit ,
sorbitol PTS permease - SrlB subunit ,
putrescine ABC transporter - ATP binding subunit (potG) ,
ribose ABC transporter - putative ATP binding subunit (rbsA) ,
dipeptide ABC transporter - putative ABC binding subunit (dppF) ,
dipeptide ABC transporter - putative ATP binding subunit (dppD) ,
L-methionine / D-methionine ABC transporter - ATP binding subunit (metN) ,
xylose ABC transporter - ATP binding subunit (xylG) ,
murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit (oppD) ,
D-allose ABC transporter - ATP binding subunit (alsA) ,
LptB ,
AceF ,
HPr (ptsH) ,
UDP-glucose 4-epimerase (ugeA) ,
DNA polymerase III, γ subunit (dnaX) ,
Superoxide dismutase [Cu-Zn] (SOD1) ,
Dihydropyrimidine dehydrogenase [NADP+] (DPYD) ,
Aldo-keto reductase family 1 member C1 (AKR1C1) ,
Aldo-keto reductase family 1 member C4 (AKR1C4) ,
Maleylacetoacetate isomerase (GSTZ1) ,
mitogen-activated protein kinase 14 (MAPK14) ,
tRNAsec (selC) ,
Arginase-1 (ARG1) ,
argininosuccinate lyase (ASL) ,
Argininosuccinate synthase (ASS1) ,
Pterin-4-alpha-carbinolamine dehydratase (PCBD1) ,
lysine-8-amino-7-oxononanoate aminotransferase (bioK) ,
a tRNAsec ,
phosphoribosylformylglycinamidine synthase (PFAS) ,
trifunctional purine biosynthetic protein adenosine-3 (GART) ,
aminotransferase (AT1G80360.1) ,
phosphoglucomutase-1 (PGM1) ,
phosphoenolpyruvate-protein phosphotransferase PtsP, enzyme INtr ,
hematopoietic prostaglandin D synthase (HPGDS) ,
prostaglandin G/H synthase 2 (PTGS2) ,
Fructose-bisphosphate aldolase B (ALDOB) ,
sulfur acceptor that activates SufS cysteine desulfurase ,
cytosolic thymidine kinase monomer (TK1) ,
ribonucleoside-diphosphate reductase small subunit (RRM2) ,
2'-5'-oligoadenylate synthetase 1 monomer (OAS1) ,
xanthine dehydrogenase ,
phosphoenolpyruvate carboxylase ,
guanine deaminase ,
β-alanine N-methyltransferase ,
betaine-homocysteine S-methyltransferase ,
S-formylglutathione hydrolase ,
4-hydroxyphenylpyruvate dioxygenase ,
cytoplasmic glycerol-3-phosphate acyltransferase ,
UDP-glucose pyrophosphorylase ,
sucrose-phosphate phosphatase ,
serine acetyltransferase ,
O-acetylserine (thiol) lyase ,
5'-methylthioadenosine phosphorylase ,
26-kDa subunit (prdB) ,
N-methyltransferase subunit (BANMT1) ,
polyamine oxidase (propane-1,3-diamine forming) (MPAO) ,
mannose-1-phosphate phosphatase ,
phosphomannose isomerase ,
pyruvate decarboxylase ,
phosphoenolpyruvate carboxylase (pep1) ,
ethanolamine N-methyltransferase ,
2'-hydroxydaidzein reductase / 2-hydroxydaidzein reductase ,
(+)-pulegone reductase (PR) ,
Erg20 (FPP1) ,
IPP isomerase (IDI1) ,
phosphomevalonate kinase (erg8) ,
Erg12 ,
Erg10 ,
glyoxalase II (cytoplasmic) (glo2) ,
Pad1 ,
isoflavone-4'-O-methyltransferase ,
isoflavone-4'-O-methyltransferase ,
monodehydroascorbate reductase ,
L-ascorbate peroxidase (cytosolic) (APX1) ,
ascorbate peroxidase ,
chalcone reductase (CHR7) ,
phosphoribosylformylglycinamidine synthetase (ade6) ,
cytosolic glucose-6-phosphate isomerase (GPIS) ,
farnesyl diphosphatase (Pho8) ,
caffeine demethylase ,
exopolygalacturonate lyase W (pelW) ,
oligogalacturonate lyase (ogl) ,
catechol O-methyltransferase (Comt) ,
chalcone 4'-O-glucosyltransferase (4'CGT) ,
S-adenosylmethionine synthetase (SAMS1) ,
theobromine synthase (CaMXMT1) ,
UDPG:coniferyl alcohol glucosyltransferase ,
5-epi-aristolochene synthase (TEAS) ,
adenylate isopentenyltransferase (IPT4) ,
jasmonoyl-amino acid synthetase (JAR1) ,
cytoplasmic enolase (LOC2) ,
tRNA dimethylallyltransferase (IPT2) ,
tryptophan aminotransferase (TAA1) ,
fructose-1,6-bisphosphatase (FINS1) ,
indole-3-acetamide amidohydrolase (AT1G08980) ,
protoporphyrinogen oxidase (hemY) ,
lipoate-protein ligase (lplJ) ,
lipoyl synthase (lipoic acid synthetase) (lipA) ,
glyceraldehyde-3-phosphate dehydrogenase monomer (GAPDH) ,
thiazole synthase (thiG) ,
ThiI ,
glycine oxidase monomer (thiO) ,
retinal dehydrogenase 1 (ALDH1A1) ,
GTP cyclohydrolase I (folEA) ,
5S ribosomal RNA (rrfA) ,
23S ribosomal RNA (rrlA) ,
16S ribosomal RNA (rrsA) ,
CAD protein

Unification Links: GO:0005737


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Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 19.0 on Mon Aug 31, 2015, BIOCYC14B.