Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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MetaCyc Gene-Ontology-Terms Class: GO:0005737 - cytoplasm

Definition: All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Parent Classes:
GO:0044424 - intracellular part

Part Of:
GO:0005622 - intracellular

Parts:
GO:0005794 - Golgi apparatus (24) ,
GO:0005840 - ribosome (56) ,
GO:0044444 - cytoplasmic part (2702) ,
GO:0045239 - tricarboxylic acid cycle enzyme complex (5) ,
GO:0042579 - microbody (80) ,
GO:0005783 - endoplasmic reticulum (83) ,
GO:0005739 - mitochondrion (148) ,
GO:0045254 - pyruvate dehydrogenase complex (4) ,
GO:0045248 - cytosolic oxoglutarate dehydrogenase complex (1) ,
GO:0005960 - glycine cleavage complex (4) ,
GO:0005829 - cytosol (1700)

Term Members:
biotin carboxyl carrier protein (accB) ,
reduced thioredoxin 2 (trxC) ,
sulfur transfer protein (tusE) ,
apo-[acyl carrier protein] (acpP) ,
predicted PTS permease - SgcB subunit ,
flavorubredoxin (norV) ,
D-Ala-D-Ala dipeptidase (ddpX) ,
DNA polymerase III, χ subunit (holC) ,
predicted PTS permease - FrvA subunit ,
putative protein secretion protein for export (gspE) ,
glycine cleavage system H protein (gcvH) ,
fructose PTS permease - FruB subunit ,
nucleotide exchange factor GrpE ,
frataxin, iron-binding and oxidizing protein (cyaY) ,
sulfur transfer protein complex, TusD subunit (yheN) ,
RNA polymerase, sigma 70 (sigma D) factor (rpoD) ,
DNA polymerase III, θ subunit (holE) ,
DnaN ,
DNA polymerase III, ψ subunit (holD) ,
PrlF antitoxin (sohA) ,
RNA polymerase, sigma 19 factor (fecI) ,
RNA polymerase, sigma S (sigma 38) factor (rpoS) ,
RNA polymerase, sigma 24 (sigma E) factor (rpoE) ,
sulfur transfer protein complex, TusB subunit (yheL) ,
predicted PTS permease - FrwB subunit ,
CysB ,
RNA polymerase, sigma 32 (sigma H) factor (rpoH) ,
RhlB ,
RNA polymerase, sigma 28 (sigma F) factor (fliA) ,
sulfur transfer protein complex, TusC subunit (yheM) ,
FabA ,
threonine synthase (thrC) ,
UDP-glucose 4-epimerase monomer (galE) ,
Fcl ,
Pgi ,
mannose-6-phosphate isomerase (manA) ,
phosphoglucomutase (pgm) ,
FabH ,
PanD proenzyme, π protein ,
LeuB ,
2-isopropylmalate synthase (leuA) ,
phosphoserine phosphatase (serB) ,
DapF ,
tetrahydrodipicolinate succinylase (dapD) ,
4-hydroxy-tetrahydrodipicolinate synthase (dapA) ,
Asd ,
4-hydroxy-tetrahydrodipicolinate reductase (dapB) ,
5-keto-D-gluconate 5-reductase (idnO) ,
HisB ,
imidazole glycerol phosphate synthase, HisF subunit ,
imidazole glycerol phosphate synthase, HisH subunit ,
N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase (hisA) ,
phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase (hisI) ,
HisG ,
geranyl diphosphate synthase / farnesyl diphosphate synthase (ispA) ,
isopentenyl diphosphate isomerase (idi) ,
GdhA ,
subunit of undecaprenyl diphosphate synthase (ispU) ,
carbamoyl phosphate synthetase, α chain (carA) ,
aspartate carbamoyltransferase, PyrI subunit ,
aspartate carbamoyltransferase, PyrB subunit ,
PyrC ,
PyrE ,
PyrF ,
UMP kinase (pyrH) ,
selenide, water dikinase (selD) ,
selenocysteine synthase (selA) ,
phosphoglucosamine mutase (glmM) ,
GlmU ,
UDP-N-acetylmuramate:L-alanyl-γ-D-glutamyl-meso-diaminoheptanedioate-D-alanine ligase [multifunctional] (mpl) ,
chorismate lyase (ubiC) ,
ribose-phosphate diphosphokinase (prs) ,
ribose 1,5-bisphosphokinase (phnN) ,
GlmS ,
glycerol-3-phosphate dehydrogenase (gpsA) ,
PssA ,
cytoplasmic trehalase (treF) ,
trehalose-6-phosphate hydrolase (treC) ,
quinolinate phosphoribosyltransferase (decarboxylating) monomer (nadC) ,
NadA ,
NadR DNA-binding transcriptional repressor and NMN adenylyltransferase ,
glucokinase (glk) ,
rhamnulose-1-phosphate aldolase monomer (rhaD) ,
L-rhamnose mutarotase ,
XylA ,
LpxB ,
UDP-2,3-diacylglucosamine hydrolase (lpxH) ,
LpxD ,
UDP-3-O-acyl-N-acetylglucosamine deacetylase (lpxC) ,
LpxA ,
2,3-diketo-L-gulonate reductase monomer (yiaK) ,
L-ribulose 5-phosphate 4-epimerase monomer (araD) ,
3-deoxy-D-manno-octulosonate cytidylyltransferase (kdsB) ,
3-deoxy-D-manno-octulosonate 8-phosphate synthase (kdsA) ,
D-arabinose 5-phosphate isomerase (gutQ) ,
L-ascorbate 6-phosphate lactonase (ulaG) ,
AccC ,
acetyl-CoA carboxyltransferase, α subunit (accA) ,
acetyl-CoA carboxyltransferase, β subunit (accD) ,
malate synthase A (aceB) ,
malate synthase G (glcB) ,
L-arabinose isomerase monomer (araA) ,
L-ribulokinase monomer (araB) ,
GlpD ,
Udp ,
uridine kinase / cytidine kinase (udk) ,
dTMP kinase (tmk) ,
cytidylate kinase (cmk) ,
thymidine kinase / deoxyuridine kinase (tdk) ,
ribonucleoside hydrolase 1 (pyrimidine-specific) (rihA) ,
pantetheine-phosphate adenylyltransferase monomer (coaD) ,
dephospho-CoA kinase (coaE) ,
Dfp ,
7-cyano-7-deazaguanine reductase (queF) ,
tRNA-guanine transglycosylase monomer (tgt) ,
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (queA) ,
epoxyqueuosine reductase (queG) ,
molybdenum cofactor guanylyltransferase (mobA) ,
methionine adenosyltransferase (metK) ,
AcpS ,
AsnA ,
AsnB ,
GlnA ,
PheA ,
TyrA ,
Gpp ,
GDP pyrophosphokinase / GTP pyrophosphokinase (relA) ,
guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional] (spoT) ,
phosphopentomutase (deoB) ,
deoxyribose-phosphate aldolase (deoC) ,
FadD ,
FadI monomer ,
FadJ monomer ,
glycogen synthase (glgA) ,
1,4-α-glucan branching enzyme (glgB) ,
GlgC ,
ribokinase (rbsK) ,
ribose pyranase (rbsD) ,
L-rhamnose isomerase (rhaA) ,
FucI ,
L-fucose mutarotase (fucU) ,
NAD kinase monomer (nadK) ,
hydroxymethylbilane synthase (hemC) ,
glutamate-1-semialdehyde aminotransferase (hemL) ,
glutamyl-tRNA synthetase (gltX) ,
thymidylate synthase (thyA) ,
ArgA ,
acetylglutamate kinase monomer (argB) ,
N-acetylglutamylphosphate reductase (argC) ,
ArgD ,
ArgE ,
AtoB ,
ornithine decarboxylase, biosynthetic (speC) ,
ornithine decarboxylase, degradative (speF) ,
Adi (adiA) ,
SpeE ,
CadA ,
LdcC ,
homoserine O-succinyltransferase (metA) ,
cobalamin-dependent methionine synthase ,
lipoate synthase monomer (lipA) ,
uroporphyrinogen decarboxylase (hemE) ,
ferrochelatase (hemH) ,
coproporphyrinogen III oxidase (hemF) ,
coproporphyrinogen III dehydrogenase (hemN) ,
GTP cyclohydrolase I monomer (folE) ,
AnsA ,
Tdh ,
Kbl ,
4-aminobutyrate aminotransferase (puuE) ,
GabD ,
N-acetylmannosamine kinase (nanK) ,
propionyl-CoA synthetase (prpE) ,
2-methylisocitrate lyase (prpB) ,
adenine phosphoribosyltransferase (apt) ,
hypoxanthine-guanine phosphoribosyltransferase (hpt) ,
Amn ,
N5-carboxyaminoimidazole ribonucleotide synthetase monomer (purK) ,
PurA ,
adenylate kinase (adk) ,
ThiG ,
malate dehydrogenase (mdh) ,
isocitrate lyase monomer (aceA) ,
citrate synthase monomer (gltA) ,
2-methylcitrate synthase (prpC) ,
aconitate hydratase 1 (acnA) ,
fumarase C monomer (fumC) ,
succinyl-CoA synthetase, β subunit ,
succinyl-CoA synthetase, α subunit (sucD) ,
Icd ,
CysH ,
Epd ,
PdxJ ,
erythronate-4-phosphate dehydrogenase (pdxB) ,
SerC ,
PdxA ,
acetate kinase (ackA) ,
Pta ,
allantoinase monomer (allB) ,
ureidoglycolate dehydrogenase (allD) ,
MhpD ,
glutamate-pyruvate aminotransferase (alaA) ,
glutamate-pyruvate aminotransferase (alaC) ,
FrmA ,
PurF ,
phosphoribosylamine-glycine ligase (purD) ,
phosphoribosylformylglycinamide synthetase (purL) ,
PurM ,
phosphoribosylglycinamide formyltransferase 2 (purT) ,
arginyl-tRNA synthetase (argS) ,
cysteinyl-tRNA synthetase (cysS) ,
glutaminyl-tRNA synthetase (glnS) ,
isoleucyl-tRNA synthetase (ileS) ,
leucyl-tRNA synthetase (leuS) ,
valyl-tRNA synthetase (valS) ,
alanyl-tRNA synthetase (alaS) ,
asparaginyl-tRNA synthetase (asnS) ,
aspartyl-tRNA synthetase (aspS) ,
tyrosyl-tRNA synthetase (tyrS) ,
tryptophanyl-tRNA synthetase (trpS) ,
threonyl-tRNA synthetase (thrS) ,
seryl-tRNA synthetase (serS) ,
prolyl-tRNA synthetase (proS) ,
phenylalanyl-tRNA synthetase β-chain (pheT) ,
phenylalanyl-tRNA synthetase α-chain (pheS) ,
methionyl-tRNA synthetase (metG) ,
lysyl tRNA synthetase (LysRSs), constitutive (lysS) ,
histidyl-tRNA synthetase (hisS) ,
glycyl-tRNA synthetase, α subunit (glyQ) ,
glycyl-tRNA synthetase, β subunit (glyS) ,
UDP-N-acetylglucosamine enolpyruvoyl transferase (murA) ,
UDP-N-acetylenolpyruvoylglucosamine reductase (murB) ,
D-alanyl-D-alanine-adding enzyme (murF) ,
UDP-N-acetylmuramate-alanine ligase (murC) ,
UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase (murD) ,
UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase (murE) ,
D-alanine-D-alanine ligase A (ddlA) ,
D-alanine-D-alanine ligase B (ddlB) ,
transaldolase B (talB) ,
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (gpmM) ,
phosphoglycerate kinase (pgk) ,
glyceraldehyde 3-phosphate dehydrogenase-A monomer (gapA) ,
triose phosphate isomerase monomer (tpiA) ,
fructose bisphosphate aldolase monomer (fbaB) ,
fructose-1,6-bisphosphatase monomer (fbp) ,
fructose 1,6-bisphosphatase II (glpX) ,
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase monomer (gpmA) ,
GarL ,
UDP-N-acetylglucosamine 2-epimerase (rffE) ,
3-dehydroquinate synthase (aroB) ,
AroH ,
3-phosphoshikimate-1-carboxyvinyltransferase (aroA) ,
shikimate kinase II (aroL) ,
FabZ ,
dethiobiotin synthetase monomer (bioD) ,
adenosylmethionine-8-amino-7-oxononanoate aminotransferase monomer (bioA) ,
argininosuccinate lyase (argH) ,
ArgI ,
ArgF ,
FolP ,
phosphoribosylglycinamide formyltransferase 1 (purN) ,
2-hydroxy-6-ketonona-2,4-dienedioate hydrolase (mhpC) ,
bifunctional folylpolyglutamate synthetase / dihydrofolate synthetase (folC) ,
pantothenate synthetase monomer (panC) ,
2-dehydropantoate 2-reductase (panE) ,
3-methyl-2-oxobutanoate hydroxymethyltransferase monomer (panB) ,
pantothenate kinase monomer (coaA) ,
cyclopropane fatty acyl phospholipid synthase (cfa) ,
phosphoenolpyruvate carboxykinase (ATP) (pck) ,
trehalose-6-phosphate phosphatase (otsB) ,
6-phosphofructokinase-1 monomer (pfkA) ,
glutamate decarboxylase B subunit (gadB) ,
UDP-L-Ara4O C-4" transaminase (arnB) ,
E3 monomer (lpd) ,
aminomethyltransferase (gcvT) ,
AceF ,
D,D-heptose 1,7-bisphosphate phosphatase (gmhB) ,
D-sedoheptulose 7-phosphate isomerase (lpcA) ,
2-ketobutyrate formate-lyase/pyruvate formate-lyase 4, inactive (tdcE) ,
PflB ,
thioredoxin reductase monomer (trxB) ,
glutathione reductase (NADPH) (gor) ,
galactokinase (galK) ,
galactose-1-phosphate uridylyltransferase (galT) ,
galactose-1-epimerase (galM) ,
formate dehydrogenase N, α subunit (fdnG) ,
formate dehydrogenase-O, α subunit (fdoG) ,
taurine dioxygenase monomer (tauD) ,
tryptophanase (tnaA) ,
serine acetyltransferase monomer (cysE) ,
MetC ,
fused PutA transcriptional repressor / proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase ,
D-serine ammonia-lyase (dsdA) ,
carbonic anhydrase monomer (cynT) ,
cyanase monomer (cynS) ,
SodA ,
SodB ,
glyoxalase III, Hsp31 molecular chaperone (hchA) ,
murein tripeptide amidase A (mpaA) ,
CaiB monomer ,
pyrroline-5-carboxylate reductase monomer (proC) ,
trans-aconitate 2-methyltransferase (tam) ,
rep ,
ATP-dependent DNA helicase (recQ) ,
23S rRNA m6A1618 methyltransferase (rlmF) ,
23S rRNA pseudouridine synthase (rluC) ,
β-1,6-galactofuranosyltransferase (wbbI) ,
RNase D (rnd) ,
Gst (gstA) ,
β-N-acetylhexosaminidase (nagZ) ,
L-2-hydroxyglutarate oxidase (lhgO) ,
oligopeptidase B (ptrB) ,
hybrid-cluster protein (hcp) ,
acetyl esterase (aes) ,
ribonuclease G (RNAse G) monomer (rng) ,
α-amylase (amyA) ,
tRNAIle-lysidine synthetase (tilS) ,
tRNA-specific 2-thiouridylase (mnmA) ,
IadA ,
tRNA m5U54 methyltransferase (trmA) ,
Mlc titration factor (mtfA) ,
TyrB ,
ClpP ,
glutamyl-Q tRNAAsp synthetase (gluQ) ,
leucyl, phenylalanyl-tRNA-protein transferase (aat) ,
regulatory ATPase (ravA) ,
N-acetylneuraminate lyase (nanA) ,
L-aspartate oxidase (nadB) ,
L,D-carboxypeptidase A (ldcA) ,
DNA polymerase IV (Y-family DNA polymerase; translesion DNA synthesis) (dinB) ,
23S rRNA m1G745 methyltransferase (rlmA) ,
formyltetrahydrofolate deformylase (purU) ,
23S rRNA m2G1835 methyltransferase (rlmG) ,
23S rRNA 2'-O-ribose U2552 methyltransferase (rlmE) ,
guanylate kinase (gmk) ,
PepP ,
protease III (ptrA) ,
pyrimidine nucleotidase (yjjG) ,
MutH ,
16S rRNA m7G527 methyltransferase (rsmG) ,
tRNA (Gm18) 2'-O-methyltransferase (trmH) ,
RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication (rnhA) ,
RNAse HII, degrades RNA of DNA-RNA hybrids (rnhB) ,
autoinducer-2 kinase (lsrK) ,
m7GTP pyrophosphatase (yceF) ,
AidB ,
deoxyguanosine triphosphate triphosphohydrolase (dgt) ,
Hyi ,
ATP-dependent RNA helicase, specific for 23S rRNA (dbpA) ,
23S rRNA 2'-O-ribose C2498 methyltransferase (rlmM) ,
DNA polymerase III, α subunit (dnaE) ,
DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease (polA) ,
nitric oxide dioxygenase (hmp) ,
DNA gyrase, subunit B (gyrB) ,
DNA gyrase, subunit A ,
hydrogen sulfide synthesis [multifunctional] (sseA) ,
NAD(P)H:quinone oxidoreductase (wrbA) ,
Eda ,
catalase II (katE) ,
protein involved in modification of U34 in tRNA (mnmG) ,
GTPase, involved in modification of U34 in tRNA (mnmE) ,
stationary phase mismatch/uracil DNA glycosylase (mug) ,
Fsa (fsaA) ,
fructose 6-phosphate aldolase 2 (fsaB) ,
16S rRNA m5C1407 methyltransferase (rsmF) ,
cAMP phosphodiesterase (cpdA) ,
23S rRNA pseudouridine synthase (rluD) ,
oligoribonuclease monomer (orn) ,
Lon ,
KpLE2 phage-like element; 2-dehydro-3-deoxy-D-pentonate aldolase (yjhH) ,
CP4-6 prophage; probable 2-keto-3-deoxygluconate aldolase (yagE) ,
methylglyoxal synthase (mgsA) ,
pimeloyl-[acp] methyl ester esterase (bioH) ,
acrylyl-CoA reductase (yhdH) ,
xanthosine phosphorylase (xapA) ,
methionine-oxo-acid transaminase, PLP-dependent (ybdL) ,
ThiI ,
tRNA C32 thiolase (ttcA) ,
galactoside O-acetyltransferase monomer (lacA) ,
formamidopyrimidine DNA glycosylase (mutM) ,
tRNAMet cytidine acetyltransferase (tmcA) ,
enterochelin esterase (fes) ,
ProA ,
ProB ,
SpeG ,
protein interacts with RecR and possibly RecF proteins (recO) ,
recombination and repair (recR) ,
ssDNA and dsDNA binding, ATP binding (recF) ,
16S rRNA m62A1518,m62A1519 dimethyltransferase (rsmA) ,
branch migration of Holliday structures; repair (ruvA) ,
branch migration of Holliday structures; repair helicase (ruvB) ,
Holliday junction nuclease; resolution of structures; repair (ruvC) ,
peptidase T ,
tRNA(i6A37) synthase (miaA) ,
ferritin iron storage protein (ftnA) ,
dTDP-4-dehydrorhamnose 3,5-epimerase (rfbC) ,
peptidyl-tRNA hydrolase (pth) ,
peptidyl-tRNA hydrolase, ribosome rescue factor (arfB) ,
pyridine nucleotide transhydrogenase, soluble (sthA) ,
citrate lyase, citryl-ACP lyase β subunit (citE) ,
citrate lyase, citrate-ACP transferase α subunit (citF) ,
citrate lyase, acyl carrier γ subunit (citD) ,
16S rRNA m2G1207 methyltransferase (rsmC) ,
16S rRNA m4C1402 methyltransferase (rsmH) ,
RNase III (rnc) ,
peptidase E, a dipeptidase where amino-terminal residue is aspartate (pepE) ,
dCMP phosphohydrolase (yfbR) ,
ribosomal protein S12 D88 methylthiotransferase (rimO) ,
adenylate cyclase (cyaA) ,
β-phosphoglucomutase (ycjU) ,
protein-lysine deacetylase and desuccinylase (cobB) ,
chaperone for [Fe-S] cluster biosynthesis (hscA) ,
23S rRNA 2'-O-ribose G2251 methyltransferase monomer (rlmB) ,
16S rRNA pseudouridine 516 synthase (rsuA) ,
L-isoaspartate protein carboxylmethyltransferase type II (pcm) ,
ssDNA/RNA exonuclease, 3' → 5' specific (tatD) ,
broad specificity 5'(3')-nucleotidase and polyphosphatase (umpG) ,
dipeptidyl carboxypeptidase II (dcp) ,
adenosine-3'(2'),5'-bisphosphate nucleotidase (cysQ) ,
3-ketoacyl-CoA thiolase (fadA) ,
DNA topoisomerase III (topB) ,
Autoinducer 2-degrading protein (lsrG) ,
RNase R (rnr) ,
fused 5-methylaminomethyl-2-thiouridine-forming methyltransferase and FAD-dependent demodification enzyme (mnmC) ,
L-cysteine desulfurase (sufS) ,
Qor ,
fused tRNA nucleotidyltransferase / 2',3'-cyclic phosphodiesterase / 2' nucleotidase and phosphatase (cca) ,
23S rRNA m3Ψ1915 methyltransferase (rlmH) ,
DNA primase (dnaG) ,
methylglyoxal reductase [multifunctional] (dkgB) ,
tRNA m6A37 methyltransferase (yfiC) ,
lysyl-tRNA synthetase (lysU) ,
aminopeptidase B (pepB) ,
N-acetyl-anhydromuramyl-L-alanine-amidase (ampD) ,
D-Tyr-tRNATyr deacylase (dtd) ,
RNA 3'-terminal phosphate cyclase (rtcA) ,
16S rRNA m2G1516 methyltransferase (rsmJ) ,
enoyl-[acyl-carrier-protein] reductase subunit (fabI) ,
cysteine desulfurase monomer (iscS) ,
serine hydroxymethyltransferase (glyA) ,
uracil-DNA glycosylase (ung) ,
sugar phosphatase (ybiV) ,
sugar phosphatase (yidA) ,
tRNA pseudouridine synthase I (truA) ,
16S rRNA m3U1498 methyltransferase monomer (rsmE) ,
p-aminobenzoyl-glutamate hydrolase subunit A (abgA) ,
p-aminobenzoyl-glutamate hydrolase subunit B (abgB) ,
ribosomal-protein-S18-alanine N-acetyltransferase (rimI) ,
ribosomal-protein-S5-alanine N-acetyltransferase (rimJ) ,
aminopeptidase A/I (pepA) ,
nitrite reductase ,
nitrite reductase, large subunit (nirB) ,
nitrite reductase, small subunit (nirD) ,
3-methyl-adenine DNA glycosylase II, inducible (alkA) ,
FabB ,
maltodextrin glucosidase (malZ) ,
lipid hydroperoxide peroxidase (tpx) ,
thiol peroxidase (bcp) ,
ribonuclease II (rnb) ,
10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase (fmt) ,
ThrB ,
proofreading thioesterase in enterobactin biosynthesis (entH) ,
CheB ,
flavodoxin NADP+ reductase (fpr) ,
NrdG ,
AlkB repair system for alkylated DNA and RNA ,
lipoyl(octanoyl) transferase (lipB) ,
GlpE ,
tryptophan synthase, β subunit (trpB) ,
tryptophan synthase, α subunit (trpA) ,
23S rRNA m5C1962 methyltransferase monomer (rlmI) ,
lipoyl-protein ligase A (lplA) ,
O6-alkylguanine-DNA-alkyltransferase (ogt) ,
Ada DNA-binding transcriptional dual regulator ,
AspC ,
AceK ,
endonuclease V (deoxyinosine 3'-endonuclease) (nfi) ,
nucleoside triphosphate pyrophosphatase (yhdE) ,
2-keto-3-deoxy-L-rhamnonate aldolase (yfaU) ,
serine/threonine protein kinase (rdoA) ,
maltodextrin phosphorylase monomer (malP) ,
methyltransferase for 50S ribosomal subunit protein L11 (prmA) ,
RNase I, cleaves phosphodiester bond between any two nucleotides ,
tellurite methyltransferase (tehB) ,
ribonucleoside diphosphate reductase 1, β subunit, ferritin-like (nrdB) ,
NrdF ,
NrdE ,
[protein-PII] uridylyltransferase (glnD) ,
deoxyribodipyrimidine photolyase (photoreactivation) (phr) ,
excision nuclease subunit A (uvrA) ,
excinuclease ABC, subunit C; repair of UV damage to DNA (uvrC) ,
DNA repair; excision nuclease subunit B (uvrB) ,
alkyl hydroperoxide reductase, AhpC component ,
D-malate / 3-isopropylmalate dehydrogenase (decarboxylating) (dmlA) ,
GhrB ,
glyoxylate reductase / hydroxypyruvate reductase (ghrA) ,
RNA polymerase, α subunit (rpoA) ,
RNA polymerase, β' subunit (rpoC) ,
RNA polymerase, β subunit (rpoB) ,
16S rRNA 2'-O-ribose C1402 methyltransferase (rsmI) ,
isopentenyl-adenosine A37 tRNA methylthiolase (miaB) ,
tRNA (cytidine/uridine-2'-O)-ribose methyltransferase (trmL) ,
5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase (ybjI) ,
lipid kinase (yegS) ,
GuaC ,
Eno ,
polynucleotide phosphorylase monomer (pnp) ,
RNase E (rne) ,
glycerophosphodiester phosphodiesterase, cytosolic (ugpQ) ,
oligopeptidase A (prlC) ,
γ-glutamyl-γ-aminobutyraldehyde dehydrogenase (puuC) ,
fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase (rlmL) ,
LtaE ,
poly(A) polymerase I (pcnB) ,
methylglyoxal reductase [multifunctional] (dkgA) ,
23S rRNA m2A2503 methyltransferase and tRNA m2A37 methyltransferase (rlmN) ,
tRNA Cm32/Um32 methyltransferase (trmJ) ,
8-oxo-dGTP diphosphatase (mutT) ,
diadenosine tetraphosphatase (apaH) ,
GTPase associated with the 50S subunit of the ribosome (hflX) ,
selenocysteyl-tRNA-specific translation elongation factor (selB) ,
FKBP-type peptidyl prolyl cis-trans isomerase (slyD) ,
FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (fklB) ,
peptidyl-prolyl cis-trans isomerase B (rotamase B) (ppiB) ,
peptidyl-prolyl cis-trans isomerase C (rotamase C) (ppiC) ,
peptidyl-prolyl cis-trans isomerase (fkpB) ,
chaperone protein Tig; trigger factor ,
EntE ,
phenylhydantoinase (hyuA) ,
NADH-dependent dihydropyrimidine dehydrogenase subunit (preA) ,
Ppa ,
16S rRNA m5C967 methyltransferase (rsmB) ,
tRNA m1G37 methyltransferase (trmD) ,
valine-pyruvate aminotransferase (avtA) ,
exonuclease VII, small subunit (xseB) ,
exonuclease VII, large subunit (xseA) ,
pyridoxal phosphatase / fructose 1,6-bisphosphatase (ybhA) ,
phosphosugar phosphatase (yigL) ,
pyridoxal phosphatase / HMP-PP hydrolase (cof) ,
inositol monophosphatase (suhB) ,
amylomaltase (malQ) ,
monoacetylchitobiose-6-phosphate hydrolase (chbF) ,
MetB ,
ferric reductase, NADPH-dependent (yqjH) ,
Ndk ,
EF-P-lysine lysyltransferase (epmA) ,
LptB ,
predicted PTS permease - CmtB subunit ,
chitobiose PTS permease - ChbB subunit ,
chitobiose PTS permease - ChbA subunit ,
sorbitol PTS permease - SrlB subunit ,
galactitol PTS permease - GatA subunit ,
galactitol PTS permease - GatB subunit ,
L-ascorbate PTS permease - UlaB subunit ,
Enzyme IIAGlc; Crr ,
mannose PTS permease - ManX subunit ,
murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit (oppD) ,
putrescine ABC transporter - ATP binding subunit (potG) ,
ribose ABC transporter - putative ATP binding subunit (rbsA) ,
dipeptide ABC transporter - putative ABC binding subunit (dppF) ,
dipeptide ABC transporter - putative ATP binding subunit (dppD) ,
xylose ABC transporter - ATP binding subunit (xylG) ,
D-allose ABC transporter - ATP binding subunit (alsA) ,
L-methionine / D-methionine ABC transporter - ATP binding subunit (metN) ,
AgaX (yadI) ,
predicted PTS permease - SgcA subunit ,
DNA polymerase III, γ subunit (dnaX) ,
chaperone protein DnaK ,
chaperone protein DnaJ ,
30S ribosomal subunit protein S1 (rpsA) ,
Superoxide dismutase [Cu-Zn] (SOD1) ,
Dihydropyrimidine dehydrogenase [NADP+] (DPYD) ,
Aldo-keto reductase family 1 member C1 (AKR1C1) ,
Aldo-keto reductase family 1 member C4 (AKR1C4) ,
Maleylacetoacetate isomerase (GSTZ1) ,
mitogen-activated protein kinase 14 (MAPK14) ,
tRNAsec (selC) ,
Arginase-1 (ARG1) ,
argininosuccinate lyase (ASL) ,
Argininosuccinate synthase (ASS1) ,
Pterin-4-alpha-carbinolamine dehydratase (PCBD1) ,
lysine-8-amino-7-oxononanoate aminotransferase (bioK) ,
tRNAsec ,
phosphoribosylformylglycinamidine synthase (PFAS) ,
trifunctional purine biosynthetic protein adenosine-3 (GART) ,
aminotransferase (AT1G80360.1) ,
phosphoglucomutase-1 (PGM1) ,
phosphoenolpyruvate-protein phosphotransferase PtsP, enzyme INtr ,
hematopoietic prostaglandin D synthase (HPGDS) ,
prostaglandin G/H synthase 2 (PTGS2) ,
Fructose-bisphosphate aldolase B (ALDOB) ,
sulfur acceptor that activates SufS cysteine desulfurase ,
cytosolic thymidine kinase monomer (TK1) ,
ribonucleoside-diphosphate reductase small subunit (RRM2) ,
protein chain elongation factor EF-P (efp) ,
2'-5'-oligoadenylate synthetase 1 monomer (OAS1) ,
xanthine dehydrogenase ,
phosphoenolpyruvate carboxylase ,
guanine deaminase ,
β-alanine N-methyltransferase ,
betaine-homocysteine S-methyltransferase ,
S-formylglutathione hydrolase ,
4-hydroxyphenylpyruvate dioxygenase ,
cytoplasmic glycerol-3-phosphate acyltransferase ,
UDP-glucose pyrophosphorylase ,
sucrose-phosphate phosphatase ,
serine acetyltransferase ,
O-acetylserine (thiol) lyase ,
5'-methylthioadenosine phosphorylase ,
26-kDa subunit (prdB) ,
N-methyltransferase subunit (BANMT1) ,
polyamine oxidase (propane-1,3-diamine forming) (MPAO) ,
mannose-1-phosphate phosphatase ,
phosphomannose isomerase ,
pyruvate decarboxylase ,
phosphoenolpyruvate carboxylase (pep1) ,
ethanolamine N-methyltransferase ,
2'-hydroxydaidzein reductase / 2-hydroxydaidzein reductase ,
(+)-pulegone reductase (PR) ,
Erg20 (FPP1) ,
IPP isomerase (IDI1) ,
phosphomevalonate kinase (erg8) ,
Erg12 ,
Erg10 ,
glyoxalase II (cytoplasmic) (glo2) ,
phenylacrylate decarboxylase (pad1) ,
isoflavone-4'-O-methyltransferase ,
isoflavone-4'-O-methyltransferase ,
monodehydroascorbate reductase ,
L-ascorbate peroxidase (cytosolic) (APX1) ,
ascorbate peroxidase ,
chalcone reductase (CHR7) ,
phosphoribosylformylglycinamidine synthetase (ade6) ,
cytosolic glucose-6-phosphate isomerase (GPIS) ,
farnesyl diphosphatase (Pho8) ,
caffeine demethylase ,
exopolygalacturonate lyase W (pelW) ,
oligogalacturonate lyase (ogl) ,
catechol O-methyltransferase (Comt) ,
chalcone 4'-O-glucosyltransferase (4'CGT) ,
S-adenosylmethionine synthetase (SAMS1) ,
theobromine synthase (CaMXMT1) ,
UDPG:coniferyl alcohol glucosyltransferase ,
5-epi-aristolochene synthase (TEAS) ,
adenylate isopentenyltransferase (IPT4) ,
jasmonoyl-amino acid synthetase (JAR1) ,
cytoplasmic enolase (LOC2) ,
tRNA dimethylallyltransferase (IPT2) ,
tryptophan aminotransferase (TAA1) ,
fructose-1,6-bisphosphatase (FINS1) ,
indole-3-acetamide amidohydrolase (AT1G08980) ,
protoporphyrinogen oxidase (hemY) ,
lipoate-protein ligase (lplJ) ,
lipoyl synthase (lipoic acid synthetase) (lipA) ,
glyceraldehyde-3-phosphate dehydrogenase monomer (GAPDH) ,
thiazole synthase (thiG) ,
ThiI ,
glycine oxidase monomer (thiO) ,
retinal dehydrogenase 1 (ALDH1A1) ,
GTP cyclohydrolase I (folEA) ,
5S ribosomal RNA (rrfA) ,
23S ribosomal RNA (rrlA) ,
16S ribosomal RNA (rrsA) ,
CAD protein

Unification Links: GO:0005737


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Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Fri Nov 21, 2014, BIOCYC13B.