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Metabolic Modeling Tutorial
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BioCyc websites down
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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MetaCyc Gene-Ontology-Terms Class: GO:0006810 - transport

Synonyms: GO:0015457, GO:0015460

Definition: The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.

Parent Classes:
GO:0051234 - establishment of localization

Child Classes:
GO:0006858 - extracellular transport (1) ,
GO:0044765 - single-organism transport (448) ,
GO:0044766 - multi-organism transport (1) ,
GO:0046907 - intracellular transport (6) ,
GO:0071702 - organic substance transport (309) ,
GO:0071705 - nitrogen compound transport (146) ,
GO:0098657 - import into cell (12) ,
GO:1901998 - toxin transport (4)

Parts:
GO:0051049 - regulation of transport (2)

Term Members:
GlvC subunit of predicted PTS permease (pseudogene) ,
sulfur transfer protein (tusE) ,
predicted PTS permease - SgcB subunit ,
predicted carbon-phosphorous lyase subunit (phnK) ,
predicted PTS permease - FrwC subunit ,
putative protein secretion protein for export (gspH) ,
predicted PTS permease - FrvA subunit ,
putative protein secretion protein for export (gspE) ,
lipoprotein required for capsular polysaccharide translocation through the outer membrane (wza) ,
fructose PTS permease - FruB subunit ,
AscF ,
ATP synthase F1 complex - epsilon subunit (atpC) ,
sulfur transfer protein complex, TusD subunit (yheN) ,
putative protein secretion protein (gspM) ,
predicted PTS permease - FrvB subunit ,
putative protein secretion protein for export (gspF) ,
ATP synthase F1 complex - gamma subunit (atpG) ,
RNA polymerase, sigma 19 factor (fecI) ,
ATP synthase F1 complex - beta subunit (atpD) ,
predicted PTS permease - FrwB subunit ,
putative protein secretion protein for export (gspJ) ,
GlvB subunit of predicted PTS permease (pseudogene) ,
putative protein secretion protein for export (gspD) ,
fructose PTS permease - FruA subunit ,
ATP synthase F0 complex - a subunit (atpB) ,
NadR DNA-binding transcriptional repressor and NMN adenylyltransferase ,
anaerobic glycerol-3-phosphate dehydrogenase subunit C (glpC) ,
fumarate reductase membrane protein (frdD) ,
fumarate reductase membrane protein (frdC) ,
trimethylamine N-oxide reductase I ,
dimethyl sulfoxide reductase ,
dimethyl sulfoxide reductase, chain C (dmsC) ,
dimethyl sulfoxide reductase, chain A (dmsA) ,
NADH:ubiquinone oxidoreductase, chain B (nuoB) ,
NADH:ubiquinone oxidoreductase, chain CD (nuoC) ,
NADH:ubiquinone oxidoreductase, membrane subunit N (nuoN) ,
NADH:ubiquinone oxidoreductase, membrane subunit K (nuoK) ,
NADH:ubiquinone oxidoreductase, membrane subunit A (nuoA) ,
protein with low undecaprenyl pyrophosphate phosphatase activity (lpxT) ,
membrane-bound lytic murein transglycosylase F (mltF) ,
nitric oxide dioxygenase (hmp) ,
nitrate reductase A ,
nitrate reductase Z ,
enterochelin esterase (fes) ,
leader peptidase, integral membrane protein (gspO) ,
hydrogenase 1, b-type cytochrome subunit (hyaC) ,
cysteine desulfurase monomer (iscS) ,
riboflavin reductase / FMN reductase (fre) ,
thioredoxin/glutathione peroxidase (btuE) ,
MalX PTS permease ,
L-valine efflux transporter - YgaZ subunit ,
quorum signal AI-2 exporter (tqsA) ,
S-methyl-L-methionine transporter (mmuP) ,
undecaprenyl-phosphate-α-L-Ara4N flippase - ArnF subunit ,
undecaprenyl-phosphate-α-L-Ara4N flippase - ArnE subunit ,
tellurite resistance protein / ethidium efflux transporter (tehA) ,
predicted short chain fatty acid transporter (atoE) ,
Fe2+ transporter FeoB ,
essential cell division protein FtsW; lipid II flippase ,
L-alanine exporter (alaE) ,
nicotinamide riboside transporter (pnuC) ,
adenine transporter (adeQ) ,
LptA ,
LptG ,
LptB ,
LptF ,
manganese export protein (mntP) ,
F- efflux transporter / involved in resistance to camphor-induced chromosome decondensation (crcB) ,
C4 dicarboxylate / C4 monocarboxylate transporter DauA ,
O-antigen flippase (rfbX) ,
galactarate / glucarate / glycerate transporter GarP ,
galactarate / glucarate / glycerate transporter GudP ,
fructoselysine / psicoselysine transporter (frlA) ,
guanine / hypoxanthine transporter GhxP ,
guanine / hypoxanthine transporter GhxQ ,
heavy metal divalent cation transporter ZupT ,
trehalose PTS permease - TreB subunit ,
N-acetylmuramic acid PTS permease / anhydro-N-acetylmuramic acid permease (murP) ,
predicted PTS permease - CmtA subunit ,
predicted PTS permease - CmtB subunit ,
NagE ,
chitobiose PTS permease - ChbB subunit ,
chitobiose PTS permease - ChbC subunit ,
chitobiose PTS permease - ChbA subunit ,
sorbitol PTS permease - SrlE subunit ,
sorbitol PTS permease - SrlB subunit ,
sorbitol PTS permease - SrlA subunit ,
galactitol PTS permease - GatA subunit ,
galactitol PTS permease - GatB subunit ,
galactitol PTS permease - GatC subunit ,
MtlA ,
L-ascorbate PTS permease - UlaA subunit ,
L-ascorbate PTS permease - UlaB subunit ,
Enzyme IIAGlc; Crr ,
glucose PTS permease - PtsG subunit ,
mannose PTS permease - ManX subunit ,
mannose PTS permease - ManY subunit ,
mannose PTS permease - ManZ subunit ,
BglF ,
glutamine ABC transporter - periplasmic binding protein (glnH) ,
glutamine ABC transporter - membrane subunit (glnP) ,
glutamine ABC transporter - ATP binding subunit (glnQ) ,
leucine ABC transporter - periplasmic binding protein (livK) ,
murein tripeptide ABC transporter OppBCDFMppA - periplasmic binding protein ,
murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit (oppF) ,
murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit (oppD) ,
murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit (oppC) ,
murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit (oppB) ,
molybdate ABC transporter - periplasmic binding protein (modA) ,
molybdate ABC transporter - membrane subunit (modB) ,
molybdate ABC transporter - ATP binding subunit (modC) ,
L-arginine ABC transporter - ATP binding subunit (artP) ,
L-arginine ABC transporter - membrane subunit (artM) ,
L-arginine ABC transporter - membrane subunit (artQ) ,
L-arginine ABC transporter - periplasmic binding protein (artJ) ,
K+ transporting ATPase - KdpC subunit ,
K+ transporting ATPase - ATP binding subunit (kdpB) ,
K+ transporting ATPase - K+ channel forming subunit (kdpA) ,
aliphatic sulfonate ABC transporter - ATP binding subunit (ssuB) ,
aliphatic sulfonate ABC transporter - membrane subunit (ssuC) ,
aliphatic sulfonate ABC transporter - periplasmic binding protein (ssuA) ,
phosphonate ABC transporter - periplasmic binding protein (phnD) ,
phosphonate ABC transporter - membrane subunit (phnE_1) ,
phosphonate ABC transporter - ATP binding subunit (phnC) ,
glycine betaine / proline ABC transporter - periplasmic binding protein (proX) ,
glycine betaine / proline ABC transporter - membrane subunit (proW) ,
glycine betaine / proline ABC transporter - ATP binding subunit (proV) ,
protoheme IX ABC transporter - ATP binding subunit (ccmA) ,
protoheme IX ABC transporter - membrane subunit CcmB ,
protoheme IX ABC transporter - membrane subunit CcmD ,
protoheme IX ABC transporter - membrane subunit CcmC ,
glycerol-3-phosphate ABC transporter - periplasmic binding protein (ugpB) ,
glycerol-3-phosphate ABC transporter - membrane subunit (ugpE) ,
glycerol-3-phosphate ABC transporter - membrane subunit (ugpA) ,
glycerol-3-phosphate ABC transporter - ATP binding subunit (ugpC) ,
nickel ABC transporter - periplasmic binding protein (nikA) ,
nickel ABC transporter - membrane subunit (nikC) ,
nickel ABC transporter - membrane subunit (nikB) ,
nickel ABC transporter - ATP binding subunit (nikE) ,
nickel ABC transporter - ATP binding subunit (nikD) ,
galactofuranose / galactopyranose ABC transporter - periplasmic binding protein (ytfQ) ,
galactofuranose / galactopyranose ABC transporter - putative membrane subunit (ytfT) ,
galactofuranose / galactopyranose ABC transporter - putative ATP binding subunit (ytfR) ,
galactofuranose / galactospyranose ABC transporter - putative membrane subunit (yjfF) ,
putrescine ABC transporter - periplasmic binding protein (potF) ,
putrescine ABC transporter - membrane subunit (potI) ,
putrescine ABC transporter - membrane subunit (potH) ,
putrescine ABC transporter - ATP binding subunit (potG) ,
taurine ABC transporter - ATP binding subunit (tauB) ,
taurine ABC transporter - membrane subunit (tauC) ,
taurine ABC transporter - periplasmic binding protein (tauA) ,
ribose ABC transporter - putative periplasmic binding protein (rbsB) ,
ribose ABC transporter - membrane subunit (rbsC) ,
ribose ABC transporter - putative ATP binding subunit (rbsA) ,
dipeptide ABC transporter - periplasmic binding protein (dppA) ,
dipeptide ABC transporter - putative membrane subunit (dppC) ,
dipeptide ABC transporter - putative membrane subunit (dppB) ,
dipeptide ABC transporter - putative ABC binding subunit (dppF) ,
dipeptide ABC transporter - putative ATP binding subunit (dppD) ,
galactose ABC transporter - periplasmic binding protein (mglB) ,
galactose ABC transporter - membrane subunit (mglC) ,
galactose ABC transporter - ATP binding subunit (mglA) ,
ATP-binding lipopolysaccharide transport protein (msbA) ,
glutamate / aspartate ABC transporter - ATP binding subunit (gltL) ,
glutamate / aspartate ABC transporter - membrane subunit (gltJ) ,
glutamate / aspartate ABC transporter - membrane subunit (gltK) ,
glutamate / aspartate ABC transporter - periplasmic binding protein (gltI) ,
xylose ABC transporter - periplasmic binding protein (xylF) ,
xylose ABC transporter - membrane subunit (xylH) ,
xylose ABC transporter - ATP binding subunit (xylG) ,
Cu+ efflux ATPase (copA) ,
branched chain amino acid ABC transporter - periplasmic binding protein (livJ) ,
branched chain amino acid transporter - membrane subunit (livM) ,
branched chain amino acid transporter - membrane subunit (livH) ,
branched chain amino acid transporter - ATP binding subunit (livG) ,
branched chain amino acid ABC transporter - ATP binding subunit (livF) ,
glutathione ABC transporter - membrane subunit (gsiC) ,
glutathione ABC transporter - membrane subunit (gsiD) ,
glutathione ABC transporter - periplasmic binding protein (gsiB) ,
glutathione ABC transporter - ATP binding subunit (gsiA) ,
AI-2 ABC transporter - ATP binding subunit (lsrA) ,
Autoinducer-2 ABC transporter - membrane subunit (lsrC) ,
Autoinducer-2 ABC transporter - membrane subunit (lsrD) ,
arabinose ABC transporter - periplasmic binding protein (araF) ,
arabinose ABC transporter - membrane subunit (araH) ,
arabinose ABC transporter - ATP binding subunit (araG) ,
D-allose ABC transporter - periplasmic binding protein (alsB) ,
D-allose ABC transporter - membrane subunit (alsC) ,
D-allose ABC transporter - ATP binding subunit (alsA) ,
sulfate / thiosulfate ABC transporter - periplasmic binding protein Sbp ,
sulfate / thiosulfate ABC transporter - periplasmic binding protein CysP ,
sulfate / thiosulfate ABC transporter - membrane subunit (cysU) ,
sulfate / thiosulfate ABC transporter - membrane subunit (cysW) ,
sulfate / thiosulfate ABC transporter - ATP binding subunit (cysA) ,
putrescine / spermidine ABC transporter - periplasmic binding protein (potD) ,
putrescine / spermidine ABC transporter - membrane subunit (potC) ,
putrescine / spermidine ABC transporter - membrane subunit (potB) ,
putrescine / spermidine ABC transporter - ATP binding subunit (potA) ,
Zn2+ ABC transporter - periplasmic binding protein (znuA) ,
Zn2+ ABC transporter - membrane subunit (znuB) ,
Zn2+ ABC transporter - ATP binding subunit (znuC) ,
glutathione / L-cysteine efflux transporter - CydC subunit ,
glutathione / L-cysteine efflux transporter - CydD subunit ,
maltose ABC transporter - periplasmic binding protein (malE) ,
maltose ABC transporter - membrane subunit (malG) ,
maltose ABC transporter - membrane subunit (malF) ,
maltose ABC transporter - ATP binding subunit (malK) ,
phosphate ABC transporter - periplasmic binding protein (pstS) ,
phosphate ABC transporter - membrane subunit (pstC) ,
phosphate ABC transporter - membrane subunit (pstA) ,
phosphate ABC transporter - ATP binding subunit (pstB) ,
L-methionine / D-methionine ABC transporter - periplasmic binding protein (metQ) ,
L-methionine / D-methionine ABC transporter - membrane subunit (metI) ,
L-methionine / D-methionine ABC transporter - ATP binding subunit (metN) ,
p-aminobenzoyl glutamate:H+ symporter (abgT) ,
pantothenate:Na+ symporter (panF) ,
uracil:H+ symporter UraA ,
uracil:H+ symporter RutG ,
arabinose efflux transporter (ydeA) ,
sugar / lactose efflux transporter SetA ,
sugar / lactose efflux transporter SetB ,
phenylalanine:H+ symporter PheP ,
outer membrane receptor involved in uptake of ferric dihyroxybenzoylserine (cirA) ,
glutamate:sodium symporter (gltS) ,
glutamic acid:4-aminobutyrate antiporter (gadC) ,
3-hydroxyphenylpropionate / 3-hydroxycinnamate:H+ symporter (mhpT) ,
choline:H+ symporter (betT) ,
spermidine efflux transporter - MdtI subunit ,
spermidine efflux transporter - MdtJ subunit ,
arabinose:H+ symporter (araE) ,
glycerol-3-phosphate:phosphate antiporter (glpT) ,
Zn2+ / Cd2+ / Ni2+ / Cu2+ efflux transporter ZitB ,
rhamnose / lyxose:H+ symporter (rhaT) ,
xylose:H+ symporter (xylE) ,
serine / threonine:Na+ symporter (sstT) ,
cytosine transporter (codB) ,
sodium:H+ antiporter (nhaB) ,
galactonate:H+ symporter (lgoT) ,
nucleoside:H+ symporter NupG ,
acetate / succinate:H+ symporter (satP) ,
K+ : H+ antiporter KefB ,
KefC ,
2,3-diketo-L-gulonate:Na+ symporter - membrane subunit (yiaM) ,
2,3-diketo-L-gulonate:Na+ symporter - membrane subunit (yiaN) ,
2,3-diketo-L-gulonate:Na+ symporter - periplasmic binding protein (yiaO) ,
xanthine:H+ symporter XanP ,
xanthine:H+ symporter XanQ ,
FieF ,
lysine:H+ symporter (lysP) ,
aromatic amino acid exporter (yddG) ,
O-acetylserine/cysteine export protein (eamA) ,
O-Acetylserine/Cysteine Efflux Permease (eamB) ,
TolC monomer ,
enterobactin efflux transporter EntS ,
hexuronate transporter (exuT) ,
shikimate:H+ symporter (shiA) ,
TatA ,
TatE ,
TatC ,
TatB ,
leucine efflux transporter (leuE) ,
EmrE ,
AdiC ,
Na+ / K+:H+ antiporter ChaA ,
multidrug efflux transporter MdfA (multifunctional) ,
multidrug efflux transporter / bile salt:H+ antiporter / Na+:H+ antiporter / K+:H+ antiporter (mdtM) ,
lactose / melibiose:H+ symporter LacY ,
K+ transporter TrkG ,
K+ transporter TrkH ,
serine:H+ symporter SdaC ,
serine / threonine:H+ symporter TdcC ,
L-idonate / 5-ketogluconate / gluconate transporter IdnT ,
gluconate transporter GntU ,
gluconate transporter GntT ,
gluconate / fructuronate transporter GntP ,
adenine:H+ symporter (adeP) ,
ClcA ,
phosphate transporter (pitB) ,
NhaA ,
muropeptide:H+ symporter (ampG) ,
dicarboxylate transporter DcuB ,
dicarboxylate transporter DcuA ,
dicarboxylate transporter DcuC ,
proline:Na+ symporter (putP) ,
copper / silver efflux system - membrane subunit (cusA) ,
copper / silver efflux system - membrane fusion protein (cusB) ,
copper / silver efflux system - outer membrane porin (cusC) ,
hydroxylated, aromatic carboxylic acid efflux transporter - putative membrane subunit (aaeB) ,
hydroxylated, aromatic carboxylic acid efflux transporter - putative membrane fusion protein (aaeA) ,
N-acetylneuraminate:H+ symporter (nanT) ,
4-aminobutyrate:H+ symporter (gabP) ,
melibiose:H+/Na+/Li+ symporter (melB) ,
nitrate / nitrite transporter NarU ,
ArsB ,
purine ribonucleoside efflux transporter (nepI) ,
galactose:H+ symporter (galP) ,
glutamate / aspartate : H+ symporter GltP ,
C4 dicarboxylate / orotate:H+ symporter (dctA) ,
serine / alanine / glycine / cycloserine:H+symporter (cycA) ,
RhtC threonine Rht Transporter ,
urate:H+ symporter (uacT) ,
ActP ,
CaiT ,
nucleoside:H+ symporter NupC ,
branched chain amino acid transporter BrnQ ,
fucose:H+ symporter (fucP) ,
α-ketoglutarate:H+ symporter (kgtP) ,
ProP ,
putrescine:H+ symporter PuuP ,
putrescine:H+ symporter / putrescine:ornithine antiporter PotE ,
putrescine:H+ symporter PlaP ,
citrate:succinate antiporter (citT) ,
dipeptide / tripeptide:H+ symporter DtpB ,
dipeptide / tripeptide:H+ symporter DptC (dtpC) ,
dipeptide:H+ symporter DtpD ,
tripeptide / dipeptide:H+ symporter DtpA ,
hexose-6-phosphate:phosphate antiporter (uhpT) ,
Mn2+ / Fe2+: H+ symporter MntH ,
glycolate / lactate:H+ symporter (glcA) ,
(R)-lactate / (S)-lactate / glycolate:H+ symporter LldP ,
2-dehydro-3-deoxy-D-gluconate:H+ symporter (kdgT) ,
tartrate:succinate antiporter (ttdT) ,
homoserine / homoserine lactone efflux transporter (rhtB) ,
threonine / homoserine efflux transporter (rhtA) ,
xanthosine:H+ symporter XapB ,
tryptophan:H+ symporter TnaB ,
tryptohan / indole:H+ symporter Mtr ,
aromatic amino acid:H+ symporter AroP ,
cadaverine:H+ symporter / lysine:cadaverine antiporter (cadB) ,
vitamin B12 ABC transporter - ATP binding subunit (btuD) ,
vitamin B12 ABC transporter - membrane subunit (btuC) ,
vitamin B12 ABC transporter - periplasmic binding protein (btuF) ,
ferrichrome / phage / antibiotic outer membrane porin FhuA ,
ferric citrate outer membrane porin FecA ,
ferric dicitrate ABC transporter - ATP binding subunit (fecE) ,
ferric dicitrate ABC transporter - membrane subunit (fecC) ,
ferric dicitrate ABC transporter - membrane subunit (fecD) ,
ferric dicitrate ABC transporter - periplasmic binding protein (fecB) ,
ferric enterobactin / colicin B / colicin D outer membrane porin FepA ,
ferric enterobactin ABC transporter - ATP binding subunit (fepC) ,
ferric enterobactin ABC transporter - membrane subunit (fepD) ,
ferric enterobactin ABC transporter - membrane subunit (fepG) ,
ferric enterobactin ABC transporter - periplasmic binding protein (fepB) ,
ferric coprogen outer membrane porin FhuE ,
tonB energy transducing system - ExbD subunit ,
TonB energy transducing system - ExbB subunit ,
TonB energy transducing system - TonB subunit ,
iron (III) hydroxamate ABC transporter - ATP binding subunit (fhuC) ,
iron (III) hydroxamate ABC transporter - membrane subunit (fhuB) ,
iron (III) hydroxamate ABC transporter - periplasmic binding protein (fhuD) ,
OmpC ,
OmpF ,
vitamin B12 / E colicin / bacteriophage BF23 outer membrane porin BtuB ,
FocA ,
K+ transporter Kup ,
K+ channel Kch monomer ,
partially N-deacetylated poly-β-1,6-N-acetyl-D-glucosamine outer membrane porin (pgaA) ,
N-acetylneuraminic acid outer membrane channel (nanC) ,
nucleoside channel; receptor of phage T6 and colicin K (tsx) ,
long-chain fatty acid outer membrane porin; bacteriophage T2 receptor (fadL) ,
nitrite transporter NirC ,
nitrate:nitrite antiporter NarK ,
AmtB ,
LamB ,
GlpF ,
Ni2+ / Co2+ / Mg2+ transporter (corA) ,
AqpZ ,
chitobiose outer membrane porin (chiP) ,
predicted PTS permease - SgcC subunit ,
AgaX (yadI) ,
predicted PTS permease - SgcA subunit ,
putative protein secretion protein for export (gspG) ,
putative protein secretion protein for export (gspK) ,
putative protein secretion protein for export (gspI) ,
putative protein secretion protein for export (gspC) ,
carnitine O-palmitoyltransferase 2 (CPT2) ,
TolB ,
malonyl CoA-acyl carrier protein transacylase (MCAT) ,
mitochondrial carnitine/acylcarnitine carrier protein (SLC25A20) ,
ATP synthase F1 complex - delta subunit (atpH) ,
ATP synthase F1 complex - alpha subunit (atpA) ,
AtpE ,
ATP synthase F0 complex - b subunit (atpF) ,
prostaglandin-D2 synthase (PTGDS) ,
Non-specific lipid-transfer protein (SCP2) ,
interphotoreceptor retinoid-binding protein (RBP3) ,
retinaldehyde-binding protein 1 (RLBP1) ,
cellular retinol-binding protein 2 (RBP2) ,
cellular retinol-binding protein 1 (RBP1) ,
plasma retinol-binding protein (RBP4) ,
putative protein secretion protein for export (gspL) ,
phosphoglucomutase-2 (PGM2) ,
cytochrome aa3-600 quinol oxidase (subunit II) (qoxA) ,
cytochrome aa3-600 quinol oxidase (subunit I) (qoxB) ,
ethylbenzene dioxygenase, ferredoxin component (etbAc)

Unification Links: GO:0006810


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Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Mon Dec 22, 2014, biocyc11.