MetaCyc Protein Class: a modified protein

This class describes proteins that have been covalently modified, such as by the addition of a phosphate group.

Child Classes: (2S,3S,7R)-2-amino-3-amino-7-hydroxy-8-(2-iminoimidazolidin-4-yl)octanoyl-[GdnH polyketide synthase] (0), (hydroxy)phthioceranyl-[(hydroxy)phthioceranic acid synthase] (0), (R)-β-hydroxy-L-tyrosine-S-[NovH protein] (0), (S)-2-methylbutanoyl-[2-methylbutanoate polyketide synthase] (0), 2'-hydroxy-β-oxo-L-tyrosine-S-[NovH protein] (0), 3-hydroxyquinaldyl-D-cysteinyl-glycyl-[non-ribosomal peptide synthase] (0), 3-hydroxyquinaldyl-[acyl-carrier protein] (0), 3O,4-dimethyl,5-hydroxy L-tyrosinyl-[SfmC peptidyl-carrier-protein] (0), 4-amino-2-(methanethioyl)-5-oxo-3-sulfanylpyrrolidine-2-carboxyl-[HlmE non-ribosomal peptide synthetase] (0), 4-hydroxybenzoyl-[PKS15/1] (0), 17-(4-hydroxyphenyl)heptadecanoyl-[PKS15/1] (0), 19-(4-hydroxyphenyl)nonadecanoyl-[PKS15/1] (0), a methylated corrinoid protein (0), a (2E)-2-amino-3-sulfanylprop-2-enoyl-[HlmE non-ribosomal peptide synthetase] (0), a (2E)-2-[(2E)-2-azanidyl-3-sulfanylprop-2-enamido]-3-[HlmE non-ribosomal peptide synthetase] (0), a (3S)-3-hydroxy-L-asparagine-HIF α subunit (0), a 2,3-dehydro-decanoyl-HmqF (0), a 2-aminomalonyl semialdehyde-[seryl-carrier protein] (0), a 3,4-dihydroxybenzoyl-[AsbD acyl-carrier protein] (0), a 3,5-dihydroxy-4-methyl-anthranilyl-[SibE aryl-carrier protein] (0), a 3-hydroxy-4-methyl-anthranilyl-L-threonyl-D-valyl-[AcmD acyl-carrier protein] (0), a 3-hydroxy-4-methyl-anthranilyl-[AcmD acyl-carrier protein] (0), a 3-hydroxy-4-methyl-anthranilyl-[SibE aryl-carrier protein] (0), a 4-(γ-L-glutamylamino)-(S)-2-hydroxy-butanoyl-[BtrI acyl-carrier protein] (0), a 4-(γ-L-glutamylamino)butanoyl-[BtrI acyl-carrier protein] (0), a 4-amino butanoyl-[BtrI acyl-carrier protein] (0), a 5-L-glutamyl-[peptide] (0), a biotinylated [BCCP dimer] (1), a biotinylated [BCCP monomer] (1), a C5a anaphylatoxin (0), a caldesmon phosphate (0), a carboxy-adenylated small subunit of molybdopterin synthase (0), a carboxy-adenylated-[ThiS sulfur-carrier protein] (1), a carboxyadenylated CysO sulfur-carrier protein (0), a carboxylated-biotinylated [BCCP dimer] (1), a carboxyphthiodiolenone-[(phenol)carboxyphthiodiolenone synthase] (0), a cell division inhibitor SulA (0), a citryl-[holo citrate lyase acyl-carrier protein] (0), a cleaved angiotensinogen (0), a cleaved PqqA peptide C-terminus (0), a cleaved PqqA peptide N-terminus (0), a cleaved synthetic tetradecapeptide renin (0), a cleaved type IV prepilin (0), a complement 5 α chain (0), a complement 5 β chain (0), a complement C5 α' chain (0), a decanoyl-HmqF protein (0), a degradation product of SulA (0), a DHB-seryl-[EntF peptidyl-carrier protein] (0), a diacylglycerol prolipoprotein (1), a factor Va (0), a factor VIIa (0), a factor VIIIa (0), a factor IXa (0), a factor Xa (0), a factor XIa (0), a glycoprotein (0), a glycyl-[SfmB peptidyl-carrier-protein] (0), a GST-related dithiol glutaredoxin (oxidized) (0), a holo-[3-methylcrotonoyl-CoA:carbon-dioxide ligase (ADP-forming)] (0), a holo-[acyl-carrier protein] (3), a holo-[aryl-carrier protein] (2), a holo-[carbon monoxide dehydrogenase] (0), a holo-[EntF peptidyl-carrier protein] (0), a holo-[LYS2 peptidyl-carrier-protein] (0), a holo-[PigG peptidyl-carrier protein] (0), a holo-[seryl-carrier protein] (0), a holo-[SfmA peptidyl-carrier-protein] (0), a holo-[SfmB peptidyl-carrier-protein] (0), a holo-[SfmC peptidyl-carrier-protein] (0), a holo-[tryptophanyl-carrier protein] (0), a hydroxymethylglutaryl-CoA reductase (NADPH) phosphate (0), a HypE hydrogenase maturation protein-S-carboxamide (1), a large subunit of hydrogenase 3 (0), a lipoprotein (0), a lysosomal-enzyme N-acetyl-D-glucosaminyl-phospho-D-mannose (0), a lysosomal-enzyme-D-mannose (0), a malonyl-[holo malonate decarboxylase acyl-carrier protein] (0), a mature P17 matrix (0), a mature small ubiquitin-like modifier (SUMO) peptide (0), a metarhodopsin II (0), a metarhodopsin-Rh1 II (0), a methanol-specific corrinoid protein (1), a methylated protein (0), a methylated ribosomal protein L11 (0), a modified pks13 polyketide synthase (0), a mycocerosyl-[mycocerosic acid synthase] (0), a mycolipanoyl-[mycolipanoic acid synthase] (0), a myosin-heavy chain-phosphate (0), a N-formylmethionyl peptide (0), a NifB protein with a K-cluster (0), a NifB protein with an L-cluster (0), a NifDK protein containing an M-cluster (0), a NifEN protein complex containing an L-cluster (0), a NifEN protein complex containing an M-cluster (0), a NifQ protein with a [Mo-Fe-S] cluster (0), a p24 capsid protein (0), a palmitoylated protein (0), a peptide with N-terminal 5-oxo-L-proline (0), a peptide with N-terminal L-glutamine (0), a phosphoprotein (0), a phosphorhodopsin (0), a phosphorylated β-phosphoglucomutase (0), a phosphorylated mitogen-activated protein kinase kinase (0), a phosphorylated phosphoacetylglucosamine mutase (0), a phosphorylated phosphoglucomutase (0), a phosphorylated phosphoglucosamine mutase (0), a phosphorylated pyruvate kinase (0), a phycobiliprotein (2), a phytochrome (0), a PqqA peptide (1), a PqqA peptide with linked Glu-Tyr residues (0), a protein containing a phosphorylated (L-serine/L-threonine)-L-proline motif (0), a protein containing an (L-serine/L-threonine)-L-proline motif (0), a protein containing an L-serine-L-aspartate motif (0), a protein with correct disulfide bonds (0), a protein with incorrect disulfide bonds (0), a protein with LPXT carboxyl end attached to a pentaglycine cross-bridge of peptidoglycan (0), a protein with NXT carboxyl end attached to a pentaglycine cross-bridge of peptidoglycan (0), a protein with sequence GKFKK (0), a protein with sequence SGFRK-NH2 (0), a protein with sequence SGVFTQ (0), a protein with sequence TSAVLQSGFRK-NH2 (0), a protein with-sequence TSAVLQ (0), a protein-α-D-glucosyl-1,2-β-D-galactosyl-L-hydroxylysine (0), a protein-β-D-galactosyl-L-hydroxylysine (0), a proteoglycan (0), a renin-2 heavy chain (1), a renin-2 light chain (1), a rhodopsin (0), a rhodopsin Rh1 (0), a semiquinone electron-transfer flavoprotein (0), a seryl-[EntF peptidyl-carrier protein] (0), a SpoIVB peptidase (0), a sulfurated [MtaB protein] (0), a sulfurylated sulfur-binding protein (0), a sulfurylated sulfur-carrier protein ThiF (0), a thiocarboxy-[ThiS-Protein] (0), a thiocarboxylated small subunit of molybdopterin synthase (0), a thiocarboxylated [CysO sulfur-carrier protein] (0), a ThiS-ThiF acyl-disulfide (1), a ThiS-ThiI acyl-disulfide (0), a trans-4-hydroxy-L-proline-HIF α subunit (0), a uridylylated PII protein (1), a [2-oxoglutarate-dehydrogenase E2 protein] N6-octanoyl-L-lysine (0), a [C-phycocyanin α-subunit]-Cys84-phycocyanobilin (0), a [C-phycocyanin β-subunit]-Cys82-phycocyanobilin (0), a [C-phycocyanin β-subunit]-Cys155-phycocyanobilin (0), a [C-phycoerythrin α-subunit]-Cys84-phycoerythrobilin (0), a [C-phycoerythrin β-subunit]-Cys84-phycoerythrobilin (0), a [Co(II) dimethylamine-specific corrinoid protein] (0), a [Co(II) methylamine-specific corrinoid protein] (0), a [Co(II) trimethylamine-specific corrinoid protein] (0), a [CysO sulfur-carrier protein]-S-L-cysteine (0), a [formate C acetyltransferase]-glycin -2-yl radical (0), a [formate C acetyltransferase]-glycine (0), a [methionine synthase]-cob(I)alamin (0), a [methionine synthase]-cob(II)alamin (0), a [methyl-Co(III) methanol-specific corrinoid protein] (0), a [phycoerythrocyanin α-subunit]-Cys84-phycoviolobilin (0), a [phycoerythrocyanin β-subunit]-Cys84-phycocyanobilin (0), a [phycoerythrocyanin β-subunit]-Cys155-phycocyanobilin (0), a [protein]-3-O-L-fucosyl-L-serine (0), a [protein]-N6-(3-O-phospho-D-ribulosyl)-L-lysine (0), a [protein]-N6-(O3)-phospho-D-erythrulosyl-L-lysine (0), a [protein]-N6-(O3)-phospho-D-psicosyl-L-lysine (0), a [protein]-N6-(O3-phospho-D-erythrulosyl-L-lysine (0), a [protein]-N6-D-erythrulosyl-L-lysine (0), a [protein]-N6-D-erythrulosyl-L-lysine (0), a [protein]-N6-D-psicosyl-L-lysine (0), a [protein]-N6-D-ribulosyl-L-lysine (0), a [pyruvate dehydrogenase E2 protein] N6-octanoyl-L-lysine (0), a [pyruvate,phosphate dikinase]-phosphate (0), acrosin (0), activated complement subcomponent C1s (0), active clotting enzyme (0), adenylyl-[glutamine synthase] (0), α-D-mannosyl-(1→6)-α-D-mannosyl-R (0), an (S)-β-hydroxy-L-tryptophanyl-[tryptophanyl-carrier protein] (0), an 11-cis retinol-[cellular-retinol-binding-protein] (0), an 11-cis-retinal-[interphotoreceptor retinoid-binding protein] (0), an 11-cis-retinal-[retinal-binding protein] (0), an 11-cis-retinol-[retinal-binding protein] (0), an acetyl-[holo citrate lyase acyl-carrier protein] (1), an acetyl-[holo malonate decarboxylase acyl-carrier protein] (0), an activated choline trimethylamine-lyase (0), an activated factor B (0), an activated protein C (0), an active hydrogenase subunit (0), an active TNF-α (0), an acyl-L-alanyl-glycyl-[SfmB peptidyl-carrier-protein] (0), an acyl-protein thioester (0), an acyl-[acyl-carrier protein] (20), an acyl-[SfmA peptidyl-carrier-protein] (0), an all-trans retinal-[cellular-retinol-binding-protein] (0), an all-trans retinol-[cellular-retinol-binding-protein] (0), an all-trans-3-hydroxyretinol-[retinoid-binding protein] (0), an all-trans-retinal-[retinal-binding protein] (0), an all-trans-retinol-(plasma-retinol-binding-protein) (0), an α-D-glucosyl-[glycogenin] (1), an aminomalonyl-[seryl-carrier protein] (0), an anthraniloyl-[PqsD protein] (0), an archaeal flagellin (0), an iron-sulfur protein (6), an L-cysteinyl-[HlmE non-ribosomal peptide synthetase] (0), an L-glutamyl-[BtrI acyl-carrier protein] (0), an L-seryl-[seryl-carrier protein] (0), an L-tryptophanyl-[tryptophanyl-carrier protein] (0), an N-3-(R,R)-epoxysuccinamoyl-(S)-2,3-diaminopropanoyl-[DdaD non-ribosomal peptide synthase] (0), an N-3-fumaramoyl-(S)-2,3-diaminopropanoyl-[DdaD non-ribosomal peptide synthase] (0), an N-acylated peptide (0), an N-terminal-monoubiquitinyl-[protein] (0), an octanoyl-S-[PqsC protein] (0), an oxidized cytochrome c550 (0), an oxidized cytochrome cL (0), an oxidized electron-transfer flavoprotein (0), an oxidized ferredoxin [iron-sulfur] cluster (1), an oxidized flavodoxin (2), an oxidized flavoprotein (0), an oxidized glutaredoxin (1), an oxidized nitrogenase (1), an oxidized nitrogenase-reductase (1), an oxidized plastocyanin (0), an oxidized putidaredoxin (0), an oxidized rubredoxin (0), an oxidized thioredoxin (2), an oxidized transferrin (0), an S-sulfanyl-[L-cysteine desulfurase] (0), an S-sulfanyl-[ThiI sulfur-carrier protein] (0), an [acetyl-CoA carboxylase] phosphate (0), an [allophycocyanin α-subunit]-Cys84-phycocyanobilin (0), an [allophycocyanin β-subunit]-Cys84-phycocyanobilin (0), an [Fe-S cluster biosynthesis chaperone]-ATP (0), an [FeS cluster biosynthesis chaperone]-ADP (0), β aspartyl peptide (0), β-oxo-L-tyrosine-S-[NovH protein] (0), C27-mycolipanoyl-[mycolipanoic acid synthase] (0), C29-mycolipanoyl-[mycolipanoic acid synthase] (0), C30-mycocerosyl-[mycocerosic acid synthase] (0), C32-carboxyphthiodiolenone-[(phenol)carboxyphthiodiolenone synthase] (0), C32-mycocerosyl-[mycocerosic acid synthase] (0), C34-carboxyphthiodiolenone A-[(phenol)carboxyphthiodiolenone synthase] (0), C35-phenolcarboxyphthiodiolenone A-[(phenol)carboxyphthiodiolenone synthase] (0), C37-hydroxyphthioceranyl-[(hydroxy)phthioceranic acid synthase] (0), C37-phenolcarboxyphthiodiolenone A-[(phenol)carboxyphthiodiolenone synthase] (0), C37-phthioceranyl-[(hydroxy)phthioceranic acid synthase] (0), C40-hydroxyphthioceranyl-[(hydroxy)phthioceranic acid synthase] (0), C40-phthioceranyl-[(hydroxy)phthioceranic acid synthase] (0), citramalate lyase, active (1), cleaved flavivirus polyprotein (0), cleaved helper component proteinase (0), cleaved repressor LexA (0), dihydromonacolin L-[lovastatin nonaketide synthase] (0), egg glycoprotein Gp41 (1), fragments of semenogelin-1 (0), Glc-β-EGF-like domain (0), L-2-aminoadipyl-[LYS2 peptidyl-carrier-protein] (0), L-alanyl-[PhsB non-ribosomal peptide synthase] (0), L-alanyl-[SfmA peptidyl-carrier-protein] (0), L-tyrosine-S-[NovH protein] (0), mature pro-interleukin-1β (0), N-acetyl demethylphosphinothricinyl-L-alanyl-L-alanyl-[PhsC non-ribosomal peptide synthase] (0), N-acetyl demethylphosphinothricinyl-L-alanyl-L-leucyl-[PhsC non-ribosomal peptide synthase] (0), N-acetyl demethylphosphinothricinyl-L-alanyl-[PhsB non-ribosomal peptide synthase] (0), N-acetyl demethylphosphinothricinyl-[PhsA non-ribosomal peptide synthase] (0), N-acetyl-β-D-glucosaminyl-(1→2)-α-D-mannosyl-(1→3)-α-D-mannosyl-R (0), N-acetyl-β-D-glucosaminyl-(1→2)-[N-acetyl-β-D-glucosaminyl-(1→4)]-α-D-mannosyl-(1→3)-β-D-mannosyl-R (0), O-β-D-GlcNAc-fucosyl-protein (0), phospho-ERK (0), picornavirus polyprotein fragment (0), poliovirus polyprotein fragment (0), potyvirus polyprotein fragments (1), quinoxaline-2-carboxyl-D-seryl-L-alanyl-[non-ribosomal peptide synthase] (0), quinoxaline-2-carboxyl-[acyl-carrier protein] (0), smaller subunit of tyrosine aminotransferase (0), Xyl-α(1-3)-Glc-β-EGF-like domain (0), Xyl-α(1-3)-Xyl-α(1-3)-Glc-β-EGF-like domain (0), [a biotinylated MadF protein] (0), [a carboxylated biotinylated MadF protein] (0), [a holo citrate lyase acyl-carrier protein] (2), [a pyruvate, water dikinase]-phosphate (0), [myelin proteolipid] (0), [R-phycocyanin V α-subunit]-Cys84-phycourobilin (0)

α cleavage product of IaaA (Escherichia coli K-12 substr. MG1655) ,
α cleavage product of SpeD (Escherichia coli K-12 substr. MG1655) ,
β cleavage product of IaaA (Escherichia coli K-12 substr. MG1655) ,
β cleavage product of SpeD (Escherichia coli K-12 substr. MG1655) ,
β-glucoside PTS permease BglF - cys24 phosphorylated (cryptic) (Escherichia coli K-12 substr. MG1655) ,
β-hexosaminidase subunit β chain A (Homo sapiens) ,
β-hexosaminidase subunit β chain B (Homo sapiens) ,
β-peptidyl aminopeptidase α subunit (Sphingosinicella xenopeptidilytica) ,
β-peptidyl aminopeptidase β subunit (Sphingosinicella xenopeptidilytica) ,
γ-glutamyl transpeptidase large subunit (Homo sapiens) ,
γ-glutamyl transpeptidase small subunit (Homo sapiens) ,
γ-glutamyltransferase 5 large subunit (Homo sapiens) ,
γ-glutamyltransferase 5 small subunit (Homo sapiens) ,
γ-glutamyltranspeptidase, large subunit (Escherichia coli K-12 substr. MG1655) ,
γ-glutamyltranspeptidase, small subunit (Escherichia coli K-12 substr. MG1655) ,
(1,4-α-D-glucosyl)n-glucosyl glucogenin,
2-ketobutyrate formate-lyase / pyruvate formate-lyase 4 (Escherichia coli K-12 substr. MG1655) ,
23-kDa subunit ([Clostridium] sticklandii) ,
45-kDa subunit ([Clostridium] sticklandii) ,
50S ribosomal subunit protein L7 (Escherichia coli K-12 substr. MG1655) ,
holo [EntF peptidyl-carrier protein] (Escherichia coli K-12 substr. MG1655) ,
holo-DhbF protein (Bacillus subtilis) ,
holo-EntB dimer (Escherichia coli K-12 substr. MG1655) ,
holo-[VibB protein monomer] (Vibrio cholerae) ,
N-acetylglucosamine-6-sulfatase 32 kDa chain (Homo sapiens) ,
N-acetylglucosamine-6-sulfatase 48 kDa chain (Homo sapiens) ,
S-adenosylmethionine decarboxylase α subunit (Homo sapiens) ,
S-adenosylmethionine decarboxylase β subunit (Homo sapiens) ,
Vibrio cholerae holo-VibF protein (Vibrio cholerae) ,
a 2,3-dihydroxybenzoyl-[VibB],
a dihydroxyphenyl-5-methyloxazoline-[VibF],
a factor XIIa,
AceF-dihydrolipoate (Escherichia coli K-12 substr. MG1655) ,
AceF-lipoate (Escherichia coli K-12 substr. MG1655) ,
AceF-S-acetyldihydrolipoate (Escherichia coli K-12 substr. MG1655) ,
activated Fe hydrogenase,
acyl coenzyme A: isopenicillin N acyltransferase α subunit (Penicillium chrysogenum) ,
acyl coenzyme A: isopenicillin N acyltransferase β subunit (Penicillium chrysogenum) ,
ADAMTS-4 endopeptidase (Homo sapiens) ,
adenylyl-[glutamine synthetase] (Escherichia coli K-12 substr. MG1655) ,
alginate lyase II (Sphingomonas sp. A1) ,
alginate lyase III (Sphingomonas sp. A1) ,
arginine decarboxylase proenzyme cleavage product α subunit (Thermococcus kodakarensis KOD1) ,
arginine decarboxylase proenzyme cleavage product β subunit (Thermococcus kodakarensis KOD1) ,
biotinylated biotin-carboxyl carrier protein (Escherichia coli K-12 substr. MG1655) ,
C-terminal fragment (Pseudomonas aeruginosa) ,
carboxybiotin-carboxyl-carrier protein (Escherichia coli K-12 substr. MG1655) ,
CH3-MtaC-cob(I)amide (Methanosarcina barkeri) ,
CheB-Pasp (Escherichia coli K-12 substr. MG1655) ,
choline trimethylamine-lyase monomer, active (Desulfovibrio alaskensis G20) ,
citrate lyase (Escherichia coli K-12 substr. MG1655) ,
corrinoid/iron-sulfur protein, methylated (Moorella thermoacetica) ,
dipeptidyl-peptidase 1 exclusion domain chain (Homo sapiens) ,
dipeptidyl-peptidase 1 heavy chain (Homo sapiens) ,
dipeptidyl-peptidase 1 light chain (Homo sapiens) ,
diphtheria toxin fragment A (Corynephage beta) ,
diphtheria toxin fragment B (Corynephage beta) ,
DsbGoxidized (Escherichia coli K-12 substr. MG1655) ,
factor X heavy chain (Homo sapiens) ,
factor X light chain (Homo sapiens) ,
factor Xa (Homo sapiens) ,
FruB - his299 phosphorylated (Escherichia coli K-12 substr. MG1655) ,
glutaminase kidney isoform large subunit (Homo sapiens) ,
glutaminase kidney isoform small subunit (Homo sapiens) ,
H-protein-(lipoyl)lysine (Gallus gallus) ,
heparanase 8 kDa subunit (Homo sapiens) ,
heparanase 50 kDa subunit (Homo sapiens) ,
histidine decarboxylase cleavage product α chain (Lactobacillus sp. 30A) ,
histidine decarboxylase cleavage product β chain (Lactobacillus sp. 30A) ,
HIV-2 retropepsin (Human immunodeficiency virus type 2 (ISOLATE ROD)) ,
HPr - phosphorylated,
HypE-S-carboxamide (Escherichia coli K-12 substr. MG1655) ,
iduronate 2-sulfatase 14 kDa chain (Homo sapiens) ,
iduronate 2-sulfatase 42 kDa chain (Homo sapiens) ,
insulin A chain (Homo sapiens) ,
insulin B chain (Homo sapiens) ,
isoaspartyl peptidase/L-asparaginase alpha chain (Homo sapiens) ,
isoaspartyl peptidase/L-asparaginase beta chain (Homo sapiens) ,
isocitrate dehydrogenase-P (Escherichia coli K-12 substr. MG1655) ,
L-histidine decarboxylase C-terminally truncated subunit (Rattus norvegicus) ,
lactyl-CoA dehydratase ([Clostridium] propionicum) ,
lipoyl-GcvH-protein (Escherichia coli K-12 substr. MG1655) ,
MoaD-S (Escherichia coli K-12 substr. MG1655) ,
Modified PSI-N,
Modified purple acid phosphatase [multifunctional],
myeloperoxidase heavy chain (Homo sapiens) ,
myeloperoxidase light chain (Homo sapiens) ,
N-terminal fragment (Pseudomonas aeruginosa) ,
oxidized ferredoxin (Escherichia coli K-12 substr. MG1655) ,
oxidized flavorubredoxin (Escherichia coli K-12 substr. MG1655) ,
oxidized glutaredoxin 1 (Escherichia coli K-12 substr. MG1655) ,
oxidized glutaredoxin 2 (Escherichia coli K-12 substr. MG1655) ,
oxidized putidaredoxin,
oxidized ribonucleoside-triphosphate reductase (Escherichia coli K-12 substr. MG1655) ,
oxidized thioredoxin (Escherichia coli K-12 substr. MG1655) ,
oxidized thioredoxin 2 (Escherichia coli K-12 substr. MG1655) ,
PanD α cleavage product (Escherichia coli K-12 substr. MG1655) ,
PanD β cleavage product (Escherichia coli K-12 substr. MG1655) ,
penicillin amidase α subunit (Escherichia coli W) ,
penicillin amidase β subunit (Escherichia coli W) ,
phosphatidylserine decarboxylase alpha chain (Homo sapiens) ,
phosphatidylserine decarboxylase beta subunit (Homo sapiens) ,
phosphatidylserine decarboxylase, α subunit (Escherichia coli K-12 substr. MG1655) ,
phosphatidylserine decarboxylase, β subunit (Escherichia coli K-12 substr. MG1655) ,
phosphoglycerol transferase II (Escherichia coli K-12 substr. MG1655) ,
phosphorylated serine/threonine kinase HipA (Escherichia coli K-12 substr. MG1655) ,
plasmin large subunit (Homo sapiens) ,
plasmin small subunit (Homo sapiens) ,
protein chain elongation factor EF-P, β-lysyl-Lys34,
protein disulfide isomerase/protein disulfide oxidoreductase - DsbCoxidised (Escherichia coli K-12 substr. MG1655) ,
protein disulfide oxidoreductase - DsbAoxidised (Escherichia coli K-12 substr. MG1655) ,
protein disulfide oxidoreductase - DsbBoxidised (Escherichia coli K-12 substr. MG1655) ,
protein disulfide oxidoreductase - DsbDoxidized (Escherichia coli K-12 substr. MG1655) ,
PtsI - his 189 phosphorylated,
pyruvate formate-lyase / 2-ketobutyrate formate-lyase (Escherichia coli K-12 substr. MG1655) ,
ricin A chain (Ricinus communis) ,
ricin B chain (Ricinus communis) ,
SoxD (Paracoccus pantotrophus) ,
SucB-dihydrolipoate (Escherichia coli K-12 substr. MG1655) ,
SucB-lipoate (Escherichia coli K-12 substr. MG1655) ,
SucB-S-succinyldihydrolipoate (Escherichia coli K-12 substr. MG1655) ,
sucrase-isomaltase alpha subunit (Homo sapiens) ,
sucrase-isomaltase beta subunit (Homo sapiens) ,
sucrose:fructan 6-fructosyltransferase 23 kDa subunit (Hordeum vulgare) ,
sucrose:fructan 6-fructosyltransferase 49 kDa subunit (Hordeum vulgare) ,
tannase 30 kDa subunit (Aspergillus oryzae) ,
tannase 33 kDa subunit (Aspergillus oryzae) ,
type IV collagenase (Homo sapiens) ,
uridylyl-[GlnK] (Escherichia coli K-12 substr. MG1655) ,
xanthine oxidase (Homo sapiens) ,
xanthine oxidase monomer (Homo sapiens)


Alvey11: Alvey RM, Biswas A, Schluchter WM, Bryant DA (2011). "Attachment of noncognate chromophores to CpcA of Synechocystis sp. PCC 6803 and Synechococcus sp. PCC 7002 by heterologous expression in Escherichia coli." Biochemistry 50(22);4890-902. PMID: 21553904

Anderson88b: Anderson DJ, Lidstrom ME (1988). "The moxFG region encodes four polypeptides in the methanol-oxidizing bacterium Methylobacterium sp. strain AM1." J Bacteriol 170(5);2254-62. PMID: 3129405

Bardy03: Bardy SL, Jarrell KF (2003). "Cleavage of preflagellins by an aspartic acid signal peptidase is essential for flagellation in the archaeon Methanococcus voltae." Mol Microbiol 50(4);1339-47. PMID: 14622420

BeardmoreGray82: Beardmore-Gray M, O'Keeffe DT, Anthony C (1982). "The autoreducible cytochromes c of the methylotrophs Methylophilus methylotrophus and Pseudomonas AM1." Biochem J 207(1);161-5. PMID: 6295363

Begley99: Begley TP, Downs DM, Ealick SE, McLafferty FW, Van Loon AP, Taylor S, Campobasso N, Chiu HJ, Kinsland C, Reddick JJ, Xi J (1999). "Thiamin biosynthesis in prokaryotes." Arch Microbiol 1999;171(5);293-300. PMID: 10382260

Bentrop86: Bentrop J, Paulsen R (1986). "Light-modulated ADP-ribosylation, protein phosphorylation and protein binding in isolated fly photoreceptor membranes." Eur J Biochem 161(1);61-7. PMID: 3780740

Bera09: Bera AK, Atanasova V, Robinson H, Eisenstein E, Coleman JP, Pesci EC, Parsons JF (2009). "Structure of PqsD, a Pseudomonas quinolone signal biosynthetic enzyme, in complex with anthranilate." Biochemistry 48(36);8644-55. PMID: 19694421

Blokesch04: Blokesch M, Paschos A, Bauer A, Reissmann S, Drapal N, Bock A (2004). "Analysis of the transcarbamoylation-dehydration reaction catalyzed by the hydrogenase maturation proteins HypF and HypE." Eur J Biochem 271(16);3428-36. PMID: 15291820

Blokesch04a: Blokesch M, Albracht SP, Matzanke BF, Drapal NM, Jacobi A, Bock A (2004). "The complex between hydrogenase-maturation proteins HypC and HypD is an intermediate in the supply of cyanide to the active site iron of [NiFe]-hydrogenases." J Mol Biol 344(1);155-67. PMID: 15504408

Blot09: Blot N, Wu XJ, Thomas JC, Zhang J, Garczarek L, Bohm S, Tu JM, Zhou M, Ploscher M, Eichacker L, Partensky F, Scheer H, Zhao KH (2009). "Phycourobilin in trichromatic phycocyanin from oceanic cyanobacteria is formed post-translationally by a phycoerythrobilin lyase-isomerase." J Biol Chem 284(14);9290-8. PMID: 19182270

Brejc95: Brejc K, Ficner R, Huber R, Steinbacher S (1995). "Isolation, crystallization, crystal structure analysis and refinement of allophycocyanin from the cyanobacterium Spirulina platensis at 2.3 A resolution." J Mol Biol 249(2);424-40. PMID: 7783202

Britton68: Britton HG, Clarke JB (1968). "The mechanism of the phosphoglucomutase reaction. Studies on rabbit muscle phosphoglucomutase with flux techniques." Biochem J 110(2);161-80. PMID: 5726186

Burke97: Burke SA, Krzycki JA (1997). "Reconstitution of Monomethylamine:Coenzyme M methyl transfer with a corrinoid protein and two methyltransferases purified from Methanosarcina barkeri." J Biol Chem 272(26);16570-7. PMID: 9195968

Burns05: Burns KE, Baumgart S, Dorrestein PC, Zhai H, McLafferty FW, Begley TP (2005). "Reconstitution of a new cysteine biosynthetic pathway in Mycobacterium tuberculosis." J Am Chem Soc 127(33);11602-3. PMID: 16104727

Byer15: Byer AS, Shepard EM, Peters JW, Broderick JB (2015). "Radical S-adenosyl-L-methionine chemistry in the synthesis of hydrogenase and nitrogenase metal cofactors." J Biol Chem 290(7);3987-94. PMID: 25477518

Byers07: Byers DM, Gong H (2007). "Acyl carrier protein: structure-function relationships in a conserved multifunctional protein family." Biochem Cell Biol 85(6);649-62. PMID: 18059524

Byk93: Byk T, Bar-Yaacov M, Doza YN, Minke B, Selinger Z (1993). "Regulatory arrestin cycle secures the fidelity and maintenance of the fly photoreceptor cell." Proc Natl Acad Sci U S A 90(5);1907-11. PMID: 8446607

Chapman67: Chapman DJ, Cole WJ, Siegelman HW (1967). "Chromophores of allophycocyanin and R-phycocyanin." Biochem J 105(3);903-5. PMID: 16742564

Chen94b: Chen D, Swenson RP (1994). "Cloning, sequence analysis, and expression of the genes encoding the two subunits of the methylotrophic bacterium W3A1 electron transfer flavoprotein." J Biol Chem 269(51);32120-30. PMID: 7798207

Corbett06: Corbett MC, Hu Y, Fay AW, Ribbe MW, Hedman B, Hodgson KO (2006). "Structural insights into a protein-bound iron-molybdenum cofactor precursor." Proc Natl Acad Sci U S A 103(5);1238-43. PMID: 16423898

Cowan93: Cowan SW, Newcomer ME, Jones TA (1993). "Crystallographic studies on a family of cellular lipophilic transport proteins. Refinement of P2 myelin protein and the structure determination and refinement of cellular retinol-binding protein in complex with all-trans-retinol." J Mol Biol 230(4);1225-46. PMID: 7683727

Craciun12: Craciun S, Balskus EP (2012). "Microbial conversion of choline to trimethylamine requires a glycyl radical enzyme." Proc Natl Acad Sci U S A 109(52);21307-12. PMID: 23151509

Cushman67: Cushman DW, Tsai RL, Gunsalus IC (1967). "The ferroprotein component of a methylene hydroxylase." Biochem Biophys Res Commun 26(5);577-83. PMID: 4383050

Dai06a: Dai J, Wang L, Allen KN, Radstrom P, Dunaway-Mariano D (2006). "Conformational cycling in beta-phosphoglucomutase catalysis: reorientation of the beta-D-glucose 1,6-(Bis)phosphate intermediate." Biochemistry 45(25);7818-24. PMID: 16784233

Davies92: Davies MD, Sligar SG (1992). "Genetic variants in the putidaredoxin-cytochrome P-450cam electron-transfer complex: identification of the residue responsible for redox-state-dependent conformers." Biochemistry 31(46);11383-9. PMID: 1445875

Drees15: Drees SL, Fetzner S (2015). "PqsE of Pseudomonas aeruginosa Acts as Pathway-Specific Thioesterase in the Biosynthesis of Alkylquinolone Signaling Molecules." Chem Biol 22(5);611-8. PMID: 25960261

Dulcey13: Dulcey CE, Dekimpe V, Fauvelle DA, Milot S, Groleau MC, Doucet N, Rahme LG, Lepine F, Deziel E (2013). "The end of an old hypothesis: the pseudomonas signaling molecules 4-hydroxy-2-alkylquinolines derive from fatty acids, not 3-ketofatty acids." Chem Biol 20(12);1481-91. PMID: 24239007

Dyson90: Dyson HJ, Gippert GP, Case DA, Holmgren A, Wright PE (1990). "Three-dimensional solution structure of the reduced form of Escherichia coli thioredoxin determined by nuclear magnetic resonance spectroscopy." Biochemistry 1990;29(17);4129-36. PMID: 2193685

Ehmann00: Ehmann DE, Shaw-Reid CA, Losey HC, Walsh CT (2000). "The EntF and EntE adenylation domains of Escherichia coli enterobactin synthetase: sequestration and selectivity in acyl-AMP transfers to thiolation domain cosubstrates." Proc Natl Acad Sci U S A 97(6);2509-14. PMID: 10688898

Eklund84: Eklund H, Cambillau C, Sjoberg BM, Holmgren A, Jornvall H, Hoog JO, Branden CI (1984). "Conformational and functional similarities between glutaredoxin and thioredoxins." EMBO J 1984;3(7);1443-9. PMID: 6378624

Fay11: Fay AW, Blank MA, Lee CC, Hu Y, Hodgson KO, Hedman B, Ribbe MW (2011). "Spectroscopic characterization of the isolated iron-molybdenum cofactor (FeMoco) precursor from the protein NifEN." Angew Chem Int Ed Engl 50(34);7787-90. PMID: 21726031

Ferguson00: Ferguson DJ, Gorlatova N, Grahame DA, Krzycki JA (2000). "Reconstitution of dimethylamine:coenzyme M methyl transfer with a discrete corrinoid protein and two methyltransferases purified from Methanosarcina barkeri." J Biol Chem 275(37);29053-60. PMID: 10852929

Ferguson97: Ferguson DJ, Krzycki JA (1997). "Reconstitution of trimethylamine-dependent coenzyme M methylation with the trimethylamine corrinoid protein and the isozymes of methyltransferase II from Methanosarcina barkeri." J Bacteriol 179(3);846-52. PMID: 9006042

Fong84: Fong SL, Liou GI, Landers RA, Alvarez RA, Bridges CD (1984). "Purification and characterization of a retinol-binding glycoprotein synthesized and secreted by bovine neural retina." J Biol Chem 259(10);6534-42. PMID: 6427217

Fong88: Fong SL, Bridges CD (1988). "Internal quadruplication in the structure of human interstitial retinol-binding protein deduced from its cloned cDNA." J Biol Chem 263(30);15330-4. PMID: 3170584

Fong90: Fong SL, Fong WB, Morris TA, Kedzie KM, Bridges CD (1990). "Characterization and comparative structural features of the gene for human interstitial retinol-binding protein." J Biol Chem 265(7);3648-53. PMID: 2303470

Gehring98: Gehring AM, Mori I, Walsh CT (1998). "Reconstitution and characterization of the Escherichia coli enterobactin synthetase from EntB, EntE, and EntF." Biochemistry 1998;37(8);2648-59. PMID: 9485415

Gibbons02: Gibbons BJ, Roach PJ, Hurley TD (2002). "Crystal structure of the autocatalytic initiator of glycogen biosynthesis, glycogenin." J Mol Biol 319(2);463-77. PMID: 12051921

Giessen11: Giessen TW, Kraas FI, Marahiel MA (2011). "A four-enzyme pathway for 3,5-dihydroxy-4-methylanthranilic acid formation and incorporation into the antitumor antibiotic sibiromycin." Biochemistry 50(25);5680-92. PMID: 21612226

Gleason88: Gleason FK, Holmgren A (1988). "Thioredoxin and related proteins in procaryotes." FEMS Microbiol Rev 1988;4(4);271-97. PMID: 3152490

Gleason90: Gleason FK, Lim CJ, Gerami-Nejad M, Fuchs JA (1990). "Characterization of Escherichia coli thioredoxins with altered active site residues." Biochemistry 1990;29(15);3701-9. PMID: 2187529

Gutzke01: Gutzke G, Fischer B, Mendel RR, Schwarz G (2001). "Thiocarboxylation of molybdopterin synthase provides evidence for the mechanism of dithiolene formation in metal-binding pterins." J Biol Chem 276(39);36268-74. PMID: 11459846

Haarosi95: Haarosi F I, Sandorfy C (1995). "Retinylidene-opsin Schiff base chromophores and their accessibility to water." Photochemistry and Photobiology 61(5);510-517.

Hantash97: Hantash FM, Ammerlaan M, Earhart CF (1997). "Enterobactin synthase polypeptides of Escherichia coli are present in an osmotic-shock-sensitive cytoplasmic locality." Microbiology 1997;143 ( Pt 1);147-56. PMID: 9025288

Hargrave83: Hargrave PA, McDowell JH, Curtis DR, Wang JK, Juszczak E, Fong SL, Rao JK, Argos P (1983). "The structure of bovine rhodopsin." Biophys Struct Mech 9(4);235-44. PMID: 6342691

Harris04: Harris AK, Williamson NR, Slater H, Cox A, Abbasi S, Foulds I, Simonsen HT, Leeper FJ, Salmond GP (2004). "The Serratia gene cluster encoding biosynthesis of the red antibiotic, prodigiosin, shows species- and strain-dependent genome context variation." Microbiology 150(Pt 11);3547-60. PMID: 15528645

Hirose11: Hirose Y, Watanabe K, Minami A, Nakamura T, Oguri H, Oikawa H (2011). "Involvement of common intermediate 3-hydroxy-L-kynurenine in chromophore biosynthesis of quinomycin family antibiotics." J Antibiot (Tokyo) 64(1);117-22. PMID: 21102595

Hofmann92: Hofmann KP, Pulvermuller A, Buczylko J, Van Hooser P, Palczewski K (1992). "The role of arrestin and retinoids in the regeneration pathway of rhodopsin." J Biol Chem 267(22);15701-6. PMID: 1386362

Holden97: Holden M, Mayhew M, Bunk D, Roitberg A, Vilker V (1997). "Probing the interactions of putidaredoxin with redox partners in camphor P450 5-monooxygenase by mutagenesis of surface residues." J Biol Chem 272(35);21720-5. PMID: 9268300

Holmgren85: Holmgren A (1985). "Thioredoxin." Annu Rev Biochem 1985;54;237-71. PMID: 3896121

Hu06: Hu Y, Corbett MC, Fay AW, Webber JA, Hodgson KO, Hedman B, Ribbe MW (2006). "FeMo cofactor maturation on NifEN." Proc Natl Acad Sci U S A 103(46);17119-24. PMID: 17050696

Hubbard52: Hubbard R, Wald G (1952). "Cis-trans isomers of vitamin A and retinene in the rhodopsin system." J Gen Physiol 36(2);269-315. PMID: 13011282

Ishimizu07: Ishimizu T, Sano K, Uchida T, Teshima H, Omichi K, Hojo H, Nakahara Y, Hase S (2007). "Purification and substrate specificity of UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase involved in the biosynthesis of the Xyl alpha1-3Xyl alpha1-3Glc beta1-O-Ser on epidermal growth factor-like domains." J Biochem 141(4);593-600. PMID: 17317689

Ishizaki06: Ishizaki K, Schauer N, Larson TR, Graham IA, Fernie AR, Leaver CJ (2006). "The mitochondrial electron transfer flavoprotein complex is essential for survival of Arabidopsis in extended darkness." Plant J 47(5);751-60. PMID: 16923016

Jolly00: Jolly L, Pompeo F, van Heijenoort J, Fassy F, Mengin-Lecreulx D (2000). "Autophosphorylation of phosphoglucosamine mutase from Escherichia coli." J Bacteriol 2000;182(5);1280-5. PMID: 10671448

Jolly99: Jolly L, Ferrari P, Blanot D, Van Heijenoort J, Fassy F, Mengin-Lecreulx D (1999). "Reaction mechanism of phosphoglucosamine mutase from Escherichia coli." Eur J Biochem 262(1);202-10. PMID: 10231382

Kaiser11: Kaiser JT, Hu Y, Wiig JA, Rees DC, Ribbe MW (2011). "Structure of precursor-bound NifEN: a nitrogenase FeMo cofactor maturase/insertase." Science 331(6013);91-4. PMID: 21212358

Kambampati00: Kambampati R, Lauhon CT (2000). "Evidence for the transfer of sulfane sulfur from IscS to ThiI during the in vitro biosynthesis of 4-thiouridine in Escherichia coli tRNA." J Biol Chem 2000;275(15);10727-30. PMID: 10753862

Katti90: Katti SK, LeMaster DM, Eklund H (1990). "Crystal structure of thioredoxin from Escherichia coli at 1.68 A resolution." J Mol Biol 1990;212(1);167-84. PMID: 2181145

Kiselev96: Kiselev A, Subramaniam S (1996). "Modulation of arrestin release in the light-driven regeneration of Rh1 Drosophila rhodopsin." Biochemistry 35(6);1848-55. PMID: 8639666

Kubo97: Kubo H, Kawano T, Tsubuki S, Kawashima S, Katagiri C, Suzuki A (1997). "A major glycoprotein of Xenopus egg vitelline envelope, gp41, is a frog homolog of mammalian ZP3." Dev Growth Differ 39(4);405-17. PMID: 9352194

Lambalot96: Lambalot RH, Gehring AM, Flugel RS, Zuber P, LaCelle M, Marahiel MA, Reid R, Khosla C, Walsh CT (1996). "A new enzyme superfamily - the phosphopantetheinyl transferases." Chem Biol 1996;3(11);923-36. PMID: 8939709

Lauhon04: Lauhon CT, Erwin WM, Ton GN (2004). "Substrate specificity for 4-thiouridine modification in Escherichia coli." J Biol Chem 279(22);23022-9. PMID: 15037613

Li92: Li L, Lagarias JC (1992). "Phytochrome assembly. Defining chromophore structural requirements for covalent attachment and photoreversibility." J Biol Chem 267(27);19204-10. PMID: 1527043

Li96a: Li E, Norris AW (1996). "Structure/function of cytoplasmic vitamin A-binding proteins." Annu Rev Nutr 16;205-34. PMID: 8839926

Lillig03: Lillig CH, Potamitou A, Schwenn JD, Vlamis-Gardikas A, Holmgren A (2003). "Redox regulation of 3'-phosphoadenylylsulfate reductase from Escherichia coli by glutathione and glutaredoxins." J Biol Chem 278(25);22325-30. PMID: 12682041

Lindsay99: Lindsay LL, Wieduwilt MJ, Hedrick JL (1999). "Oviductin, the Xenopus laevis oviductal protease that processes egg envelope glycoprotein gp43, increases sperm binding to envelopes, and is translated as part of an unusual mosaic protein composed of two protease and several CUB domains." Biol Reprod 60(4);989-95. PMID: 10084976

Liou87: Liou GI, Fong SL, Gosden J, van Tuinen P, Ledbetter DH, Christie S, Rout D, Bhattacharya S, Cook RG, Li Y (1987). "Human interstitial retinol-binding protein (IRBP): cloning, partial sequence, and chromosomal localization." Somat Cell Mol Genet 13(4);315-23. PMID: 3455009

Lomako04: Lomako J, Lomako WM, Whelan WJ (2004). "Glycogenin: the primer for mammalian and yeast glycogen synthesis." Biochim Biophys Acta 1673(1-2);45-55. PMID: 15238248

Lombo06: Lombo F, Velasco A, Castro A, de la Calle F, Brana AF, Sanchez-Puelles JM, Mendez C, Salas JA (2006). "Deciphering the biosynthesis pathway of the antitumor thiocoraline from a marine actinomycete and its expression in two streptomyces species." Chembiochem 7(2);366-76. PMID: 16408310

Lyons96: Lyons TA, Ratnaswamy G, Pochapsky TC (1996). "Redox-dependent dynamics of putidaredoxin characterized by amide proton exchange." Protein Sci 5(4);627-39. PMID: 8845752

Maccoll91: Maccoll R (1991). "Fluorescence studies on R-phycoerythrin and C-phycoerythrin." J Fluoresc 1(2);135-40. PMID: 24242963

Markley13: Markley JL, Kim JH, Dai Z, Bothe JR, Cai K, Frederick RO, Tonelli M (2013). "Metamorphic protein IscU alternates conformations in the course of its role as the scaffold protein for iron-sulfur cluster biosynthesis and delivery." FEBS Lett. PMID: 23333622

MartinezGomez11: Martinez-Gomez NC, Palmer LD, Vivas E, Roach PL, Downs DM (2011). "The Rhodanese Domain of ThiI Is Both Necessary and Sufficient for Synthesis of the Thiazole Moiety of Thiamine in Salmonella enterica." J Bacteriol 193(18);4582-7. PMID: 21724998

Matsui88: Matsui S, Seidou M, Uchiyama I, Sekiya N, Hiraki K, Yoshihara K, Kito Y (1988). "4-Hydroxyretinal, a new visual pigment chromophore found in the bioluminescent squid, Watasenia scintillans." Biochim Biophys Acta 966(3);370-4. PMID: 3416013

Mayhew74: Mayhew SG, Whitfield CD, Ghisla S, Schuman-Jorns M (1974). "Identification and properties of new flavins in electron-transferring flavoprotein from Peptostreptococcus elsdenii and pig-liver glycolate oxidase." Eur J Biochem 44(2);579-91. PMID: 4365840

Meehan11: Meehan MJ, Xie X, Zhao X, Xu W, Tang Y, Dorrestein PC (2011). "FT-ICR-MS characterization of intermediates in the biosynthesis of the α-methylbutyrate side chain of lovastatin by the 277 kDa polyketide synthase LovF." Biochemistry 50(2);287-99. PMID: 21069965

Michelet06: Michelet L, Zaffagnini M, Massot V, Keryer E, Vanacker H, Miginiac-Maslow M, Issakidis-Bourguet E, Lemaire SD (2006). "Thioredoxins, glutaredoxins, and glutathionylation: new crosstalks to explore." Photosynth Res 89(2-3);225-45. PMID: 17089213

Mueller98: Mueller EG, Buck CJ, Palenchar PM, Barnhart LE, Paulson JL (1998). "Identification of a gene involved in the generation of 4-thiouridine in tRNA." Nucleic Acids Res 26(11);2606-10. PMID: 9592144

Najjar54: Najjar VA, Pullman ME (1954). "The occurrence of a group transfer involving enzyme (phosphoglucomutase) and substrate." Science 119(3097);631-4. PMID: 13156640

Newcomer98: Newcomer ME, Jamison RS, Ong DE (1998). "Structure and function of retinoid-binding proteins." Subcell Biochem 30;53-80. PMID: 9932510

Nikkola93: Nikkola M, Gleason FK, Fuchs JA, Eklund H (1993). "Crystal structure analysis of a mutant Escherichia coli thioredoxin in which lysine 36 is replaced by glutamic acid." Biochemistry 1993;32(19);5093-8. PMID: 8098620

Nilekani83: Nilekani S, SivaRaman C (1983). "Purification and properties of citrate lyase from Escherichia coli." Biochemistry 1983;22(20);4657-63. PMID: 6354265

Nunn88: Nunn DN, Anthony C (1988). "The nucleotide sequence and deduced amino acid sequence of the cytochrome cL gene of Methylobacterium extorquens AM1, a novel class of c-type cytochrome." Biochem J 256(2);673-6. PMID: 2851998

Nunn88a: Nunn DN, Anthony C (1988). "The nucleotide sequence and deduced amino acid sequence of the genes for cytochrome cL and a hypothetical second subunit of the methanol dehydrogenase of Methylobacterium AM1." Nucleic Acids Res 16(15);7722. PMID: 2842733

OKeeffe80: O'Keeffe DT, Anthony C (1980). "The two cytochromes c in the facultative methylotroph Pseudomonas am1." Biochem J 192(2);411-9. PMID: 6263253

OrmeJohnson92: Orme-Johnson WH (1992). "Nitrogenase structure: where to now?." Science 257(5077);1639-40. PMID: 1529351

OvesCostales08: Oves-Costales D, Kadi N, Fogg MJ, Song L, Wilson KS, Challis GL (2008). "Petrobactin biosynthesis: AsbB catalyzes condensation of spermidine with N8-citryl-spermidine and its N1-(3,4-dihydroxybenzoyl) derivative." Chem Commun (Camb) (34);4034-6. PMID: 18758617

Palczewski89: Palczewski K, McDowell JH, Jakes S, Ingebritsen TS, Hargrave PA (1989). "Regulation of rhodopsin dephosphorylation by arrestin." J Biol Chem 264(27);15770-3. PMID: 2550422

Park06: Park YJ, Yoo CB, Choi SY, Lee HB (2006). "Purifications and characterizations of a ferredoxin and its related 2-oxoacid:ferredoxin oxidoreductase from the hyperthermophilic archaeon, Sulfolobus solfataricus P1." J Biochem Mol Biol 39(1);46-54. PMID: 16466637

Paschos02: Paschos A, Bauer A, Zimmermann A, Zehelein E, Bock A (2002). "HypF, a carbamoyl phosphate-converting enzyme involved in [NiFe] hydrogenase maturation." J Biol Chem 277(51);49945-51. PMID: 12377778

Pearson01: Pearson G, Robinson F, Beers Gibson T, Xu BE, Karandikar M, Berman K, Cobb MH (2001). "Mitogen-activated protein (MAP) kinase pathways: regulation and physiological functions." Endocr Rev 22(2);153-83. PMID: 11294822

Pettis87: Pettis GS, McIntosh MA (1987). "Molecular characterization of the Escherichia coli enterobactin cistron entF and coupled expression of entF and the fes gene." J Bacteriol 1987;169(9);4154-62. PMID: 3040679

Pfennig99: Pfennig F, Schauwecker F, Keller U (1999). "Molecular characterization of the genes of actinomycin synthetase I and of a 4-methyl-3-hydroxyanthranilic acid carrier protein involved in the assembly of the acylpeptide chain of actinomycin in Streptomyces." J Biol Chem 274(18);12508-16. PMID: 10212227

Pfleger07: Pfleger BF, Lee JY, Somu RV, Aldrich CC, Hanna PC, Sherman DH (2007). "Characterization and analysis of early enzymes for petrobactin biosynthesis in Bacillus anthracis." Biochemistry 46(13);4147-57. PMID: 17346033

Pochapsky94: Pochapsky TC, Ye XM, Ratnaswamy G, Lyons TA (1994). "An NMR-derived model for the solution structure of oxidized putidaredoxin, a 2-Fe, 2-S ferredoxin from Pseudomonas." Biochemistry 33(21);6424-32. PMID: 8204575

Praseuth08: Praseuth AP, Wang CC, Watanabe K, Hotta K, Oguri H, Oikawa H (2008). "Complete sequence of biosynthetic gene cluster responsible for producing triostin A and evaluation of quinomycin-type antibiotics from Streptomyces triostinicus." Biotechnol Prog 24(6);1226-31. PMID: 19194935

Rangarajan08: Rangarajan ES, Asinas A, Proteau A, Munger C, Baardsnes J, Iannuzzi P, Matte A, Cygler M (2008). "Structure of [NiFe] hydrogenase maturation protein HypE from Escherichia coli and its interaction with HypF." J Bacteriol 190(4);1447-58. PMID: 18065529

Ray64: Ray WJ, Roscelli GA (1964). "A kinetic study of the phosphoglucomutase pathway." J Biol Chem 239;1228-36. PMID: 14165931

Ray77: Ray WJ, Mildvan AS, Grutzner JB (1977). "Phosphorus nuclear magnetic resonance studies of phosphoglucomutase and its metal ion complexes." Arch Biochem Biophys 184(2);453-63. PMID: 23074

Ray83: Ray WJ, Hermodson MA, Puvathingal JM, Mahoney WC (1983). "The complete amino acid sequence of rabbit muscle phosphoglucomutase." J Biol Chem 258(15);9166-74. PMID: 6223925

Reichert92: Reichert J, Sakaitani M, Walsh CT (1992). "Characterization of EntF as a serine-activating enzyme." Protein Sci 1992;1(4);549-56. PMID: 1338974

Reissmann03: Reissmann S, Hochleitner E, Wang H, Paschos A, Lottspeich F, Glass RS, Bock A (2003). "Taming of a poison: biosynthesis of the NiFe-hydrogenase cyanide ligands." Science 299(5609);1067-70. PMID: 12586941

Richards94: Richards AJ, Lowe DJ, Richards RL, Thomson AJ, Smith BE (1994). "Electron-paramagnetic-resonance and magnetic-circular-dichroism studies of the binding of cyanide and thiols to the thiols to the iron-molybdenum cofactor from Klebsiella pneumoniae nitrogenase." Biochem J 297 ( Pt 2);373-8. PMID: 8297344

Roberts96a: Roberts DL, Frerman FE, Kim JJ (1996). "Three-dimensional structure of human electron transfer flavoprotein to 2.1-A resolution." Proc Natl Acad Sci U S A 93(25);14355-60. PMID: 8962055

Roberts99: Roberts DL, Salazar D, Fulmer JP, Frerman FE, Kim JJ (1999). "Crystal structure of Paracoccus denitrificans electron transfer flavoprotein: structural and electrostatic analysis of a conserved flavin binding domain." Biochemistry 38(7);1977-89. PMID: 10026281

Rusnak91: Rusnak F, Sakaitani M, Drueckhammer D, Reichert J, Walsh CT (1991). "Biosynthesis of the Escherichia coli siderophore enterobactin: sequence of the entF gene, expression and purification of EntF, and analysis of covalent phosphopantetheine." Biochemistry 1991;30(11);2916-27. PMID: 1826089

Ryals82: Ryals J, Hsu RY, Lipsett MN, Bremer H (1982). "Isolation of single-site Escherichia coli mutants deficient in thiamine and 4-thiouridine syntheses: identification of a nuvC mutant." J Bacteriol 151(2);899-904. PMID: 6178725

Sari99: Sari N, Holden MJ, Mayhew MP, Vilker VL, Coxon B (1999). "Comparison of backbone dynamics of oxidized and reduced putidaredoxin by 15N NMR relaxation measurements." Biochemistry 38(31);9862-71. PMID: 10433692

Sato03: Sato K, Nishina Y, Shiga K (2003). "Purification of electron-transferring flavoprotein from Megasphaera elsdenii and binding of additional FAD with an unusual absorption spectrum." J Biochem 134(5);719-29. PMID: 14688238

Sauer98: Sauer K, Thauer RK (1998). "Methanol:coenzyme M methyltransferase from Methanosarcina barkeri--identification of the active-site histidine in the corrinoid-harboring subunit MtaC by site-directed mutagenesis." Eur J Biochem 1998;253(3);698-705. PMID: 9654068

Schleicher89: Schleicher A, Kuhn H, Hofmann KP (1989). "Kinetics, binding constant, and activation energy of the 48-kDa protein-rhodopsin complex by extra-metarhodopsin II." Biochemistry 28(4);1770-5. PMID: 2719933

Schobert99: Schobert M, Gorisch H (1999). "Cytochrome c550 is an essential component of the quinoprotein ethanol oxidation system in Pseudomonas aeruginosa: cloning and sequencing of the genes encoding cytochrome c550 and an adjacent acetaldehyde dehydrogenase." Microbiology 145 ( Pt 2);471-81. PMID: 10075429

Seki98: Seki, T., Vogt, T.F. (1998). "Evolutionary aspects of the diversity of visual pigment chromophores in the class insecta." Comp Biochem Physiol. 119:53-64.

Setif01: Setif P (2001). "Ferredoxin and flavodoxin reduction by photosystem I." Biochim Biophys Acta 1507(1-3);161-79. PMID: 11687213

Si89: Si JS, Borst DE, Redmond TM, Nickerson JM (1989). "Cloning of cDNAs encoding human interphotoreceptor retinoid-binding protein (IRBP) and comparison with bovine IRBP sequences." Gene 80(1);99-108. PMID: 2792773

Silberg01: Silberg JJ, Hoff KG, Tapley TL, Vickery LE (2001). "The Fe/S assembly protein IscU behaves as a substrate for the molecular chaperone Hsc66 from Escherichia coli." J Biol Chem 276(3);1696-700. PMID: 11053447

Silberg04: Silberg JJ, Tapley TL, Hoff KG, Vickery LE (2004). "Regulation of the HscA ATPase reaction cycle by the co-chaperone HscB and the iron-sulfur cluster assembly protein IscU." J Biol Chem 279(52);53924-31. PMID: 15485839

Smith04a: Smith N, Mayhew M, Holden MJ, Kelly H, Robinson H, Heroux A, Vilker VL, Gallagher DT (2004). "Structure of C73G putidaredoxin from Pseudomonas putida." Acta Crystallogr D Biol Crystallogr 60(Pt 5);816-22. PMID: 15103126

Sun10: Sun J, Hopkins RC, Jenney FE, McTernan PM, Adams MW (2010). "Heterologous expression and maturation of an NADP-dependent [NiFe]-hydrogenase: a key enzyme in biofuel production." PLoS One 5(5);e10526. PMID: 20463892

Sundlov12: Sundlov JA, Shi C, Wilson DJ, Aldrich CC, Gulick AM (2012). "Structural and functional investigation of the intermolecular interaction between NRPS adenylation and carrier protein domains." Chem Biol 19(2);188-98. PMID: 22365602

Taylor98: Taylor SV, Kelleher NL, Kinsland C, Chiu HJ, Costello CA, Backstrom AD, McLafferty FW, Begley TP (1998). "Thiamin biosynthesis in Escherichia coli. Identification of this thiocarboxylate as the immediate sulfur donor in the thiazole formation." J Biol Chem 273(26);16555-60. PMID: 9632726

Thomas02: Thomas MG, Burkart MD, Walsh CT (2002). "Conversion of L-proline to pyrrolyl-2-carboxyl-S-PCP during undecylprodigiosin and pyoluteorin biosynthesis." Chem Biol 9(2);171-84. PMID: 11880032

Unno96: Unno M, Shimada H, Toba Y, Makino R, Ishimura Y (1996). "Role of Arg112 of cytochrome p450cam in the electron transfer from reduced putidaredoxin. Analyses with site-directed mutants." J Biol Chem 271(30);17869-74. PMID: 8663375

Van91a: Van Spanning RJ, Wansell CW, De Boer T, Hazelaar MJ, Anazawa H, Harms N, Oltmann LF, Stouthamer AH (1991). "Isolation and characterization of the moxJ, moxG, moxI, and moxR genes of Paracoccus denitrificans: inactivation of moxJ, moxG, and moxR and the resultant effect on methylotrophic growth." J Bacteriol 173(21);6948-61. PMID: 1657871

vanderMeijden83: van der Meijden P, Heythuysen HJ, Pouwels A, Houwen F, van der Drift C, Vogels GD (1983). "Methyltransferases involved in methanol conversion by Methanosarcina barkeri." Arch Microbiol 134(3);238-42. PMID: 6615129

vanderMeijden84: van der Meijden P, te Brommelstroet BW, Poirot CM, van der Drift C, Vogels GD (1984). "Purification and properties of methanol:5-hydroxybenzimidazolylcobamide methyltransferase from Methanosarcina barkeri." J Bacteriol 1984;160(2);629-35. PMID: 6438059

Vignais08: Vignais PM (2008). "Hydrogenases and H(+)-reduction in primary energy conservation." Results Probl Cell Differ 45;223-52. PMID: 18500479

VlamisGardikas02: Vlamis-Gardikas A, Holmgren A (2002). "Thioredoxin and glutaredoxin isoforms." Methods Enzymol 347;286-96. PMID: 11898418

Wassenaar98: Wassenaar RW, Keltjens JT, van der Drift C, Vogels GD (1998). "Purification and characterization of dimethylamine:5-hydroxybenzimidazolyl-cobamide methyltransferase from Methanosarcina barkeri Fusaro." Eur J Biochem 253(3);692-7. PMID: 9654067

Watanabe06a: Watanabe K, Hotta K, Praseuth AP, Koketsu K, Migita A, Boddy CN, Wang CC, Oguri H, Oikawa H (2006). "Total biosynthesis of antitumor nonribosomal peptides in Escherichia coli." Nat Chem Biol 2(8);423-8. PMID: 16799553

Whitfield74: Whitfield CD, Mayhew SG (1974). "Purification and properties of electron-transferring flavoprotein from Peptostreptococcus elsdenii." J Biol Chem 249(9);2801-10. PMID: 4364030

Wiig11: Wiig JA, Hu Y, Ribbe MW (2011). "NifEN-B complex of Azotobacter vinelandii is fully functional in nitrogenase FeMo cofactor assembly." Proc Natl Acad Sci U S A 108(21);8623-7. PMID: 21551100

Wiig12: Wiig JA, Hu Y, Lee CC, Ribbe MW (2012). "Radical SAM-dependent carbon insertion into the nitrogenase M-cluster." Science 337(6102);1672-5. PMID: 23019652

Wilden86: Wilden U, Hall SW, Kuhn H (1986). "Phosphodiesterase activation by photoexcited rhodopsin is quenched when rhodopsin is phosphorylated and binds the intrinsic 48-kDa protein of rod outer segments." Proc Natl Acad Sci U S A 83(5);1174-8. PMID: 3006038

Williamson05a: Williamson NR, Simonsen HT, Ahmed RA, Goldet G, Slater H, Woodley L, Leeper FJ, Salmond GP (2005). "Biosynthesis of the red antibiotic, prodigiosin, in Serratia: identification of a novel 2-methyl-3-n-amyl-pyrrole (MAP) assembly pathway, definition of the terminal condensing enzyme, and implications for undecylprodigiosin biosynthesis in Streptomyces." Mol Microbiol 56(4);971-89. PMID: 15853884

Winter93: Winter NS, Bratt JM, Banaszak LJ (1993). "Crystal structures of holo and apo-cellular retinol-binding protein II." J Mol Biol 230(4);1247-59. PMID: 8487303

Wiseman08: Wiseman JM, Ifa DR, Zhu Y, Kissinger CB, Manicke NE, Kissinger PT, Cooks RG (2008). "Desorption electrospray ionization mass spectrometry: Imaging drugs and metabolites in tissues." Proc Natl Acad Sci U S A 105(47);18120-5. PMID: 18697929

Zhang08c: Zhang YM, Frank MW, Zhu K, Mayasundari A, Rock CO (2008). "PqsD is responsible for the synthesis of 2,4-dihydroxyquinoline, an extracellular metabolite produced by Pseudomonas aeruginosa." J Biol Chem 283(43);28788-94. PMID: 18728009

Zhao00: Zhao KH, Deng MG, Zheng M, Zhou M, Parbel A, Storf M, Meyer M, Strohmann B, Scheer H (2000). "Novel activity of a phycobiliprotein lyase: both the attachment of phycocyanobilin and the isomerization to phycoviolobilin are catalyzed by the proteins PecE and PecF encoded by the phycoerythrocyanin operon." FEBS Lett 469(1);9-13. PMID: 10708746

Zhao06b: Zhao KH, Wu D, Zhang L, Zhou M, Bohm S, Bubenzer C, Scheer H (2006). "Chromophore attachment in phycocyanin. Functional amino acids of phycocyanobilin--alpha-phycocyanin lyase and evidence for chromophore binding." FEBS J 273(6);1262-74. PMID: 16519690

Zhao07: Zhao KH, Su P, Tu JM, Wang X, Liu H, Ploscher M, Eichacker L, Yang B, Zhou M, Scheer H (2007). "Phycobilin:cystein-84 biliprotein lyase, a near-universal lyase for cysteine-84-binding sites in cyanobacterial phycobiliproteins." Proc Natl Acad Sci U S A 104(36);14300-5. PMID: 17726096

Zhao07a: Zhao KH, Zhang J, Tu JM, Bohm S, Ploscher M, Eichacker L, Bubenzer C, Scheer H, Wang X, Zhou M (2007). "Lyase activities of CpcS- and CpcT-like proteins from Nostoc PCC7120 and sequential reconstitution of binding sites of phycoerythrocyanin and phycocyanin beta-subunits." J Biol Chem 282(47);34093-103. PMID: 17895251

Zheng97: Zheng L, White RH, Dean DR (1997). "Purification of the Azotobacter vinelandii nifV-encoded homocitrate synthase." J Bacteriol 179(18);5963-6. PMID: 9294461

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Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
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