Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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MetaCyc Reactions Class: Protein-Reactions

Summary:
Reactions in which at least one substrate is a protein monomer, a complex containing a protein, or a modified protein.

Parent Classes:
Macromolecule Reactions

Child classes:
Protein-Ligand-Binding-Reactions (0) ,
Protein-DNA-Binding-Reactions (0) ,
Protein-Modification Reactions (836)

Instances:
1.6.2.6: 2 ferrileghemoglobin + NAD(P)H = 2 ferroleghemoglobin + NAD(P)+ + H+ ,
1.14.99.29: an [eIF5A-precursor]-deoxyhypusine + a reduced electron acceptor + oxygen → an [eIF5A]-hypusine + an oxidized electron acceptor + H2O ,
2.1.3.10: a malonyl-[holo malonate decarboxylase acyl-carrier protein] + [a biotinylated MadF protein] → an acetyl-[holo malonate decarboxylase acyl-carrier protein] + [a carboxylated biotinylated MadF protein] ,
2.3.2.6: a protein + L-leucyl-tRNAleu = tRNAleu + L-leucyl-[protein] + H+ ,
2.8.1.7: an S-sulfanyl-[cysteine desulfurase]-[disordered-form scaffold protein] complex → a [cysteine desulfurase]-S-sulfanyl-[disordered-form scaffold protein] complex ,
2.8.1.7: an S-sulfanyl-[cysteine desulfurase]-S-sulfanyl-[disordered-form scaffold protein] complex → a [cysteine desulfurase]-(S-sulfanyl)2-[disordered-form scaffold protein] complex ,
3.4.14.12: a peptide with proline in the third position + H2O → a tripeptide with proline at the third position + a peptide ,
3.4.21.42: complement component protein C4 + H2O → complement component protein C4a + complement component protein C4b ,
3.4.21.42: complement component protein C2 + H2O → complement component protein C2a + complement component protein C2b ,
3.4.21.104: complement component protein C4 + H2O → complement component protein C4a + complement component protein C4b ,
3.4.21.104: complement component protein C2 + H2O → complement component protein C2a + complement component protein C2b ,
3.4.21.105: type-1 transmembrane domains + H2O → cleaved type-1 transmembrane domains ,
3.4.21.106: a protein + H2O → a peptide + a peptide ,
3.4.21.107: a protein + H2O → a peptide + a peptide ,
3.4.21.108: a protein + H2O → a peptide + a peptide ,
3.4.21.109: a protein + H2O → a peptide + a peptide ,
3.4.21.110: a C5a anaphylatoxin + H2O → a cleaved C5a anaphylatoxin (inactivated) ,
3.4.21.112: a protein + H2O → a peptide + a peptide ,
3.4.21.113: an NS3-NS4A-NS4B-NS5A-NS5B-polyprotein + H2O → an NS5B protein + an NS5A protein + an NS4B protein + an NS4A protein + an NS3 polyprotein peptidase ,
3.4.21.114: an Equine arteritis virus replicase polyprotein 1ab + H2O → an Equine arteritis virus non-structural protein 8 + an Equine arteritis virus non-structural protein 7 + an Equine arteritis virus non-structural protein 6 + an Equine arteritis virus non-structural protein 5 + an Equine arteritis virus non-structural protein 12 + an Equine arteritis virus non-structural protein 11 + an Equine arteritis virus RNA-directed RNA polymerase + an Equine arteritis virus helicase ,
3.4.21.114: an Equine arteritis virus replicase polyprotein 1a + H2O → an Equine arteritis virus non-structural protein 12 + an Equine arteritis virus non-structural protein 11 + an Equine arteritis virus RNA-directed RNA polymerase + an Equine arteritis virus helicase ,
3.4.21.115: an IPNV structural polyprotein pVP2-VP4-VP3 + H2O → an IPNV protease VP4 + an IPNV capsid assembly protein VP3 + an IPNV capsid protein pVP2 ,
3.4.21.116: a SpoIVB peptidase Precursor + H2O → a SpoIVB peptidase ,
3.4.21.117: a protein + H2O → a peptide + a peptide ,
3.4.21.118: a protein + H2O → a peptide + a peptide ,
3.4.21.119: a renin-2 precursor + H2O → a renin-2 light chain + a renin-2 heavy chain ,
3.4.22.47: a protein + H2O → a peptide + a peptide ,
3.4.22.49: a RAD21 cohesin subunit + H2O → a peptide + a peptide ,
3.4.22.50: a protein + H2O → a peptide + a peptide ,
3.4.22.51: a protein + H2O → a peptide + a peptide ,
3.4.22.52: a protein + H2O → a peptide + a peptide ,
3.4.22.52: a peptide + H2O → 2 a peptide ,
3.4.22.53: a peptide + H2O → 2 a peptide ,
3.4.22.66: a Norovirus ORF1 protein + H2O → a protein p48 + an NTPase + a protein p22 + a 3C-like protease + an RNA-directed RNA polymerase ,
3.4.22.67: a protein + H2O → a peptide + a peptide ,
3.4.22.68: a small ubiquitin-like modifier (SUMO) propeptide + H2O → a mature small ubiquitin-like modifier (SUMO) peptide ,
3.4.22.69: a protein with sequence TSAVLQSGFRK-NH2 + H2O → a protein with-sequence TSAVLQ + a protein with sequence SGFRK-NH2 ,
3.4.22.69: a protein with sequence SGVTFQGKFKK + H2O → a protein with sequence SGVFTQ + a protein with sequence GKFKK ,
3.4.23.45: a β-amyloid precursor protein + H2O → a β-cleaved soluble APP peptide + a β-cleaved C-terminal membrane-associated APP peptide ,
3.4.23.46: a β-amyloid precursor protein + H2O → a β-cleaved soluble APP peptide + a β-cleaved C-terminal membrane-associated APP peptide ,
3.4.23.48: a Glu-plasminogen + H2O → a plasmin + a peptide ,
3.4.24.83: a protein + H2O → a peptide + a peptide ,
3.4.24.85: a protein + H2O → a peptide + a peptide ,
3.4.24.86: a TNF-α precursor + H2O → an active TNF-α ,
3.4.24.87: a von willebrand factor + H2O → a degraded product of von willebrand factor ,
3.4.25.1: a protein + H2O → a peptide + a peptide ,
3.6.3.48: α factor[cytosol] + ATP + H2O ↔ α factor[extracellular space] + ADP + phosphate ,
5.1.2.-: a (3R)-all-trans-3-hydroxyretinol-[retinoid-binding protein] → a (3S)-all-trans-3-hydroxyretinol-[retinoid-binding protein] ,
5.3.4.1: a protein with incorrect disulfide bonds ↔ a protein with correct disulfide bonds ,
5.3.4.1: a protein = a peptide + a peptide ,
a [co-chaperone]-[scaffold protein-(2Fe-2S)] complex + an [Fe-S cluster biosynthesis chaperone]-ATP → a [chaperone-ATP]-[co-chaperone]-[scaffold protein-(2Fe-2S)] complex ,
a [cysteine desulfurase]-[scaffold protein-(2Fe-2S)] complex + an [Fe-S cluster biosynthesis co-chaperone] → a [co-chaperone]-[scaffold protein-(2Fe-2S)] complex + an [L-cysteine desulfurase] ,
a reduced cytochrome c554 + an oxidized c-type cytochrome → an oxidized cytochrome c554 + a reduced c-type cytochrome ,
an oxidized rusticyanin[periplasmic space] + a reduced Cyc1 cytochrome[periplasmic space] ← a reduced rusticyanin[periplasmic space] + an oxidized Cyc1 cytochrome[periplasmic space] ,
a globin fragment → a large peptide (>20 AA) ,
8 a reduced ferredoxin + an oxidized nitrogenase-reductase ↔ 8 an oxidized ferredoxin + a reduced nitrogenase-reductase ,
an inactive lactyl-CoA dehydratase ↔ a lactyl-CoA dehydratase ,
a protein with reduced sulfide groups ↔ a protein with oxidized disulfide bonds


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Wed Nov 26, 2014, biocyc13.