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MetaCyc Reactions Class: RNA-Reactions

Summary:
Reactions in which at least one substrate is an RNA, a complex containing an RNA, or a modified RNA.

Parent Classes:
Polynucleotide-Reactions

Child classes:
tRNA-Reactions (145)

Instances:
2.1.1.56: a 5'-(5'-triphosphoguanosine)-purine-[mRNA] + S-adenosyl-L-methionine → S-adenosyl-L-homocysteine + a 5'-(N7-methyl 5'-triphosphoguanosine)-(purine-ribonucleotide)-[mRNA] + H+ ,
2.1.1.57: S-adenosyl-L-methionine + a 5'-(N7-methyl 5'-triphosphoguanosine)-(purine-ribonucleotide)-[mRNA] → a 5'-(N7-methyl 5'-triphosphoguanosine)-(2'-O-methyl-purine-ribonucleotide)-[mRNA] + S-adenosyl-L-homocysteine + H+ ,
2.1.1.166: uridine2552 in 23S rRNA + S-adenosyl-L-methionine → 2-O-methyluridine2552 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.167: a guanosine2922 in 27S pre-rRNA + S-adenosyl-L-methionine → a 2-O-methylguanosine2922 in 27S pre-rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.168: S-adenosyl-L-methionine + uridine2791 in 21S rRNA → S-adenosyl-L-homocysteine + 2'-O-methyluridine2791 in 21S rRNA + H+ ,
2.1.1.170: S-adenosyl-L-methionine + guanine527 in 16S rRNA → S-adenosyl-L-homocysteine + N7-methylguanine527 in 16S rRNA ,
2.1.1.171: S-adenosyl-L-methionine + guanine966 in 16S rRNA → S-adenosyl-L-homocysteine + N2-methylguanine966 in 16S rRNA + H+ ,
2.1.1.172: S-adenosyl-L-methionine + guanine1207 in 16S rRNA → S-adenosyl-L-homocysteine + N2-methylguanine1207 in 16S rRNA + H+ ,
2.1.1.173: guanine2445 in 23S rRNA + S-adenosyl-L-methionine → N2-methylguanine2445 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.174: S-adenosyl-L-methionine + guanine1835 in 23S rRNA → S-adenosyl-L-homocysteine + N2-methylguanine1835 in 23S rRNA + H+ ,
2.1.1.176: cytosine967 in 16S rRNA + S-adenosyl-L-methionine → 5-methylcytosine967 in 16S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.177: S-adenosyl-L-methionine + a pseudouridine1915 in 23S rRNA → S-adenosyl-L-homocysteine + an N3-methylpseudouridine1915 in 23S rRNA + H+ ,
2.1.1.178: S-adenosyl-L-methionine + cytosine1407 in 16S rRNA → S-adenosyl-L-homocysteine + 5-methylcytosine1407 in 16S rRNA + H+ ,
2.1.1.179: S-adenosyl-L-methionine + guanine1405 in 16S rRNA → N7-methylguanine1405 in 16S rRNA + S-adenosyl-L-homocysteine ,
2.1.1.180: adenine1408 in 16S rRNA + S-adenosyl-L-methionine → N1-methyladenine1408 in 16S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.181: adenine1618 in 23S rRNA + S-adenosyl-L-methionine → N6-methyladenine1618 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.182: adenine1518/adenine1519 in 16S rRNA + 4 S-adenosyl-L-methionine → N6-dimethyladenine1518/N6-dimethyladenine1519in 16S rRNA + 4 S-adenosyl-L-homocysteine + 4 H+ ,
2.1.1.183: an 18S rRNA adenine1779/adenine1780 + 4 S-adenosyl-L-methionine → an 18S rRNA N6-dimethyladenine1779/N6-dimethyladenine1780 + 4 S-adenosyl-L-homocysteine + 4 H+ ,
2.1.1.184: 2 S-adenosyl-L-methionine + adenine2085 in 23S rRNA → 2 S-adenosyl-L-homocysteine + N6-dimethyladenine2085 in 23S rRNA + 2 H+ ,
2.1.1.185: guanosine2251 in 23S rRNA + S-adenosyl-L-methionine → 2-O-methylguanosine2251 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.186: cytidine2498 in 23S rRNA + S-adenosyl-L-methionine → 2-O-methylcytidine2498 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.187: guanine745 in 23S rRNA + S-adenosyl-L-methionine → N1-methylguanine745 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.188: S-adenosyl-L-methionine + guanine748 in 23S rRNA → S-adenosyl-L-homocysteine + N1-methylguanine748 in 23S rRNA + H+ ,
2.1.1.189: a uracil747 in 23S rRNA + S-adenosyl-L-methionine → a 5-methyluracil747 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.190: a uracil1939 in 23S rRNA + S-adenosyl-L-methionine → a 5-methyluracil1939 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.191: cytosine1962 in 23S rRNA + S-adenosyl-L-methionine → 5-methylcytosine1962 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.192: 2 S-adenosyl-L-methionine + adenine2503 in 23S rRNA + 2 a reduced [2Fe-2S] ferredoxin → S-adenosyl-L-homocysteine + L-methionine + 5'-deoxyadenosine + 2-methyladenine2503 in 23S rRNA + 2 an oxidized [2Fe-2S] ferredoxin ,
2.1.1.193: S-adenosyl-L-methionine + uracil1498 in 16S rRNA → S-adenosyl-L-homocysteine + N3-methyluracil1498 in 16S rRNA + H+ ,
2.1.1.198: S-adenosyl-L-methionine + cytidine1402 in 16S rRNA → S-adenosyl-L-homocysteine + 2'-O-methylcytidine1402 in 16S rRNA + H+ ,
2.1.1.199: S-adenosyl-L-methionine + cytidine1402 in 16S rRNA → S-adenosyl-L-homocysteine + N4-methylcytidine1402 in 16S rRNA + H+ ,
2.1.1.208: S-adenosyl-L-methionine + a uridine2479 in 23S rRNA → S-adenosyl-L-homocysteine + a 2'-O-methyluridine2479 in 23S rRNA + H+ ,
2.1.1.209: S-adenosyl-L-methionine + guanine2535 in 23S rRNA → S-adenosyl-L-homocysteine + N1-methylguanine2535 in 23S rRNA + H+ ,
2.1.1.224: 2 S-adenosyl-L-methionine + adenine2503 in 23S rRNA + 2 a reduced [2Fe-2S] ferredoxin → S-adenosyl-L-homocysteine + L-methionine + 5'-deoxyadenosine + 8-methyladenine2503 in 23S rRNA + 2 an oxidized [2Fe-2S] ferredoxin ,
2.1.1.226: cytidine1920 in 23S rRNA + S-adenosyl-L-methionine → 2'-O-methylcytidine1920 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.227: S-adenosyl-L-methionine + cytidine1409 in 16S rRNA → S-adenosyl-L-homocysteine + 2'-O-methylcytidine1409 in 16S rRNA + H+ ,
2.1.1.230: adenosine1067 in 23S rRNA + S-adenosyl-L-methionine → 2-O-methyladenosine1067 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.296: S-adenosyl-L-methionine + a 5'-(N7-methyl 5'-triphosphoguanosine)-(2'-O-methyl-purine-ribonucleotide)-[mRNA] → S-adenosyl-L-homocysteine + a 5'-(N7-methyl 5'-triphosphoguanosine)-(2'-O-methyl-purine-ribonucleotide)-(2'-O-methyl-nucleotide)-[mRNA] + H+ ,
2.1.1.-: 2 S-adenosyl-L-methionine + an adenine37 in tRNA + 2 a reduced [2Fe-2S] ferredoxin → S-adenosyl-L-homocysteine + L-methionine + 5'-deoxyadenosine + a 2-methyladenine37 in tRNA + 2 an oxidized [2Fe-2S] ferredoxin ,
2.1.1.-: rRNA + S-adenosyl-L-methionine → rRNA containing N6,N6-dimethyladenine + S-adenosyl-L-homocysteine ,
2.4.2.5: a D-ribosyl-base(1) + a base(2) = a D-ribosyl-base(2) + a base(1) ,
2.4.2.30: ADP-D-ribosyl(n)-acceptor + NAD+ = ADP-D-ribosyl(n+1)-acceptor + nicotinamide + H+ ,
2.7.7.6: a nucleoside triphosphate + RNA(n) = RNA(n+1) + diphosphate ,
2.7.7.8: (ribonucleotides)(n) + phosphate ↔ (ribonucleotides)(n-1) + a nucleoside diphosphate ,
2.7.7.19: ATP + an mRNA = an mRNA + diphosphate ,
2.7.7.48: RNA(n) + a nucleoside triphosphate = RNA(n+1) + diphosphate ,
2.7.7.52: RNA(n) + UTP = RNA(n+1) + diphosphate ,
2.7.7.u: a 5' triphospho-[mRNA] + GDP + H+ = G(5')ppp-mRNA + diphosphate ,
3.1.3.33: a 5'-triphospho-purine-[mRNA] + H2O → a 5'-diphospho-purine-[mRNA] + phosphate + H+ ,
3.1.13.1: RNase II poly-A substrate mRNA + n H2O → RNase II substrate with no poly-A tail + n AMP ,
3.1.26.1: YhaV endonuclease degradation substrate mRNA + H2O → 2 a single-stranded RNA ,
3.1.26.1: YhaV endonuclease degradation substrate rRNA + H2O → 2 a single-stranded RNA ,
3.1.26.12: RNase E mRNA processing substrate + n H2O → RNase E processing product mRNA + n a single-stranded RNA ,
3.1.26.12: RNase E degradation substrate mRNA + n H2O → n a single-stranded RNA ,
3.1.26.12: 9S rRNA + 2 H2O → 5S rRNA + 2 a single-stranded RNA ,
3.1.26.12: RNase G degradation substrate mRNA + H2O → 2 a single-stranded RNA ,
3.1.26.13: a RNA-DNA hybrid + H2O → RNA + DNA ,
3.1.26.-: an mRNA + H2O → a single-stranded RNA + a single-stranded RNA ,
3.1.27.6: rRNA[periplasmic space] = 2 a single-stranded RNA[periplasmic space] ,
3.1.27.6: 23S rRNA[periplasmic space] + H2O[periplasmic space] → 2 a single-stranded RNA[periplasmic space] ,
3.1.-.-: an mRNA + H2O → a single-stranded RNA + a single-stranded RNA ,
3.5.4.36: a cytosine6666 in apolipoprotein B mRNA + H+ + H2O = a uracil6666 in apolipoprotein B mRNA + ammonium ,
3.5.4.37: an adenine in double-stranded RNA + H+ + H2O = a hypoxanthine in double-stranded RNA + ammonium ,
3.6.1.59: a 5'-(N7-methyl 5'-triphosphoguanosine)-(purine-ribonucleotide)-[mRNA] + H2O = N7-methylguanosine 5'-phosphate + a 5'-diphospho-purine-[mRNA] + 2 H+ ,
3.6.1.62: a 5'-(N7-methyl 5'-triphosphoguanosine)-(purine-ribonucleotide)-[mRNA] + H2O = N7-methylguanosine 5'-diphosphate + a 5'-phosphopurine-[mRNA] + 2 H+ ,
3.6.1.-: a 5' triphospho-[mRNA] + H2O → a 5'-phospho-[mRNA] + diphosphate + H+ ,
5.4.99.43: uridine2819 in 21S rRNA = a 21S rRNA pseudouridine 2819 ,
6.5.1.3: ribonucleotiden + ribonucleotiden + ATP → ribonucleotidem+n + AMP + diphosphate ,
6.5.1.4: an RNA 3'-terminal-phosphate + ATP → an RNA terminal-2',3'-cyclic-phosphate + AMP + diphosphate ,
6.5.1.5: an RNA 3'-terminal-phosphate + GTP → an RNA terminal-2',3'-cyclic-phosphate + GMP + diphosphate ,
pre-crRNA → crRNA ,
an RNA terminal-2',3'-cyclic-phosphate + H2O = an RNA 2'-terminal-phosphate ,
an RNA terminal-2',3'-cyclic-phosphate + a 5'-hydroxyl terminated RNA + GTP → a ligated RNA + GMP + diphosphate


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Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 19.0 on Mon Jul 27, 2015, biocyc14.