Metabolic Modeling Tutorial
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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MetaCyc Reactions Class: RNA-Reactions

Summary:
Reactions in which at least one substrate is an RNA, a complex containing an RNA, or a modified RNA.

Parent Classes:
Polynucleotide-Reactions

Child classes:
tRNA-Reactions (144)

Instances:
2.1.1.56: a 5'-(5'-triphosphoguanosine)-purine-[mRNA] + S-adenosyl-L-methionine → S-adenosyl-L-homocysteine + a 5'-(N7-methyl 5'-triphosphoguanosine)-(purine-ribonucleotide)-[mRNA] + H+ ,
2.1.1.57: S-adenosyl-L-methionine + a 5'-(N7-methyl 5'-triphosphoguanosine)-(purine-ribonucleotide)-[mRNA] → a 5'-(N7-methyl 5'-triphosphoguanosine)-(2'-O-methyl-purine-ribonucleotide)-[mRNA] + S-adenosyl-L-homocysteine + H+ ,
2.1.1.166: uridine2552 in 23S rRNA + S-adenosyl-L-methionine → 2-O-methyluridine2552 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.167: a guanosine2922 in 27S pre-rRNA + S-adenosyl-L-methionine → a 2-O-methylguanosine2922 in 27S pre-rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.168: S-adenosyl-L-methionine + uridine2791 in 21S rRNA → S-adenosyl-L-homocysteine + 2'-O-methyluridine2791 in 21S rRNA + H+ ,
2.1.1.170: S-adenosyl-L-methionine + guanine527 in 16S rRNA → S-adenosyl-L-homocysteine + N7-methylguanine527 in 16S rRNA ,
2.1.1.171: S-adenosyl-L-methionine + guanine966 in 16S rRNA → S-adenosyl-L-homocysteine + N2-methylguanine966 in 16S rRNA + H+ ,
2.1.1.172: S-adenosyl-L-methionine + guanine1207 in 16S rRNA → S-adenosyl-L-homocysteine + N2-methylguanine1207 in 16S rRNA + H+ ,
2.1.1.173: guanine2445 in 23S rRNA + S-adenosyl-L-methionine → N2-methylguanine2445 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.174: S-adenosyl-L-methionine + guanine1835 in 23S rRNA → S-adenosyl-L-homocysteine + N2-methylguanine1835 in 23S rRNA + H+ ,
2.1.1.176: cytosine967 in 16S rRNA + S-adenosyl-L-methionine → 5-methylcytosine967 in 16S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.177: S-adenosyl-L-methionine + a pseudouridine1915 in 23S rRNA → S-adenosyl-L-homocysteine + an N3-methylpseudouridine1915 in 23S rRNA + H+ ,
2.1.1.178: S-adenosyl-L-methionine + cytosine1407 in 16S rRNA → S-adenosyl-L-homocysteine + 5-methylcytosine1407 in 16S rRNA + H+ ,
2.1.1.179: S-adenosyl-L-methionine + guanine1405 in 16S rRNA → N7-methylguanine1405 in 16S rRNA + S-adenosyl-L-homocysteine ,
2.1.1.180: adenine1408 in 16S rRNA + S-adenosyl-L-methionine → N1-methyladenine1408 in 16S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.181: adenine1618 in 23S rRNA + S-adenosyl-L-methionine → N6-methyladenine1618 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.182: adenine1518/adenine1519 in 16S rRNA + 4 S-adenosyl-L-methionine → N6-dimethyladenine1518/N6-dimethyladenine1519in 16S rRNA + 4 S-adenosyl-L-homocysteine + 4 H+ ,
2.1.1.183: an 18S rRNA adenine1779/adenine1780 + 4 S-adenosyl-L-methionine → an 18S rRNA N6-dimethyladenine1779/N6-dimethyladenine1780 + 4 S-adenosyl-L-homocysteine + 4 H+ ,
2.1.1.184: 2 S-adenosyl-L-methionine + adenine2085 in 23S rRNA → 2 S-adenosyl-L-homocysteine + N6-dimethyladenine2085 in 23S rRNA + 2 H+ ,
2.1.1.185: guanosine2251 in 23S rRNA + S-adenosyl-L-methionine → 2-O-methylguanosine2251 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.186: cytidine2498 in 23S rRNA + S-adenosyl-L-methionine → 2-O-methylcytidine2498 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.187: guanine745 in 23S rRNA + S-adenosyl-L-methionine → N1-methylguanine745 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.188: S-adenosyl-L-methionine + guanine748 in 23S rRNA → S-adenosyl-L-homocysteine + N1-methylguanine748 in 23S rRNA + H+ ,
2.1.1.189: a uracil747 in 23S rRNA + S-adenosyl-L-methionine → a 5-methyluracil747 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.190: a uracil1939 in 23S rRNA + S-adenosyl-L-methionine → a 5-methyluracil1939 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.191: cytosine1962 in 23S rRNA + S-adenosyl-L-methionine → 5-methylcytosine1962 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.192: 2 S-adenosyl-L-methionine + adenine2503 in 23S rRNA → S-adenosyl-L-homocysteine + L-methionine + 5'-deoxyadenosine + 2-methyladenine2503 in 23S rRNA ,
2.1.1.193: S-adenosyl-L-methionine + uracil1498 in 16S rRNA → S-adenosyl-L-homocysteine + N3-methyluracil1498 in 16S rRNA + H+ ,
2.1.1.198: S-adenosyl-L-methionine + cytidine1402 in 16S rRNA → S-adenosyl-L-homocysteine + 2'-O-methylcytidine1402 in 16S rRNA + H+ ,
2.1.1.199: S-adenosyl-L-methionine + cytidine1402 in 16S rRNA → S-adenosyl-L-homocysteine + N4-methylcytidine1402 in 16S rRNA + H+ ,
2.1.1.208: S-adenosyl-L-methionine + a uridine2479 in 23S rRNA → S-adenosyl-L-homocysteine + a 2'-O-methyluridine2479 in 23S rRNA + H+ ,
2.1.1.209: S-adenosyl-L-methionine + guanine2535 in 23S rRNA → S-adenosyl-L-homocysteine + N1-methylguanine2535 in 23S rRNA + H+ ,
2.1.1.224: 2 S-adenosyl-L-methionine + adenine2503 in 23S rRNA + 2 H+S-adenosyl-L-homocysteine + L-methionine + 5'-deoxyadenosine + 8-methyladenine2503 in 23S rRNA ,
2.1.1.226: cytidine1920 in 23S rRNA + S-adenosyl-L-methionine → 2'-O-methylcytidine1920 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.227: S-adenosyl-L-methionine + cytidine1409 in 16S rRNA → S-adenosyl-L-homocysteine + 2'-O-methylcytidine1409 in 16S rRNA + H+ ,
2.1.1.230: adenosine1067 in 23S rRNA + S-adenosyl-L-methionine → 2-O-methyladenosine1067 in 23S rRNA + S-adenosyl-L-homocysteine + H+ ,
2.1.1.296: S-adenosyl-L-methionine + a 5'-(N7-methyl 5'-triphosphoguanosine)-(2'-O-methyl-purine-ribonucleotide)-[mRNA] → S-adenosyl-L-homocysteine + a 5'-(N7-methyl 5'-triphosphoguanosine)-(2'-O-methyl-purine-ribonucleotide)-(2'-O-methyl-nucleotide)-[mRNA] + H+ ,
2.1.1.-: 2 S-adenosyl-L-methionine + an adenine37 in tRNA → S-adenosyl-L-homocysteine + L-methionine + 5'-deoxyadenosine + a 2-methyladenine37 in tRNA ,
2.1.1.-: rRNA + S-adenosyl-L-methionine → rRNA containing N6,N6-dimethyladenine + S-adenosyl-L-homocysteine ,
2.4.2.5: a D-ribosyl-base(1) + a base(2) = a D-ribosyl-base(2) + a base(1) ,
2.4.2.30: ADP-D-ribosyl(n)-acceptor + NAD+ = ADP-D-ribosyl(n+1)-acceptor + nicotinamide + H+ ,
2.7.7.6: a nucleoside triphosphate + RNA(n) = RNA(n+1) + diphosphate ,
2.7.7.8: (ribonucleotides)(n) + phosphate ↔ (ribonucleotides)(n-1) + a nucleoside diphosphate ,
2.7.7.19: ATP + an mRNA = an mRNA + diphosphate ,
2.7.7.48: RNA(n) + a nucleoside triphosphate = RNA(n+1) + diphosphate ,
2.7.7.52: RNA(n) + UTP = RNA(n+1) + diphosphate ,
2.7.7.u: a 5' triphospho-[mRNA] + GDP + H+ = G(5')ppp-mRNA + diphosphate ,
3.1.3.33: a 5'-triphospho-purine-[mRNA] + H2O → a 5'-diphospho-purine-[mRNA] + phosphate + H+ ,
3.1.13.1: RNase II poly-A substrate mRNA + n H2O → RNase II substrate with no poly-A tail + n AMP ,
3.1.26.1: YhaV endonuclease degradation substrate mRNA + H2O → 2 a single-stranded RNA ,
3.1.26.1: YhaV endonuclease degradation substrate rRNA + H2O → 2 a single-stranded RNA ,
3.1.26.12: RNase E degradation substrate mRNA + n H2O → n a single-stranded RNA ,
3.1.26.12: RNase E mRNA processing substrate + n H2O → RNase E processing product mRNA + n a single-stranded RNA ,
3.1.26.12: 9S rRNA + 2 H2O → 5S rRNA + 2 a single-stranded RNA ,
3.1.26.12: RNase G degradation substrate mRNA + H2O → 2 a single-stranded RNA ,
3.1.26.13: a RNA-DNA hybrid + H2O → RNA + DNA ,
3.1.26.-: an mRNA + H2O → a single-stranded RNA + a single-stranded RNA ,
3.1.27.6: 23S rRNA[periplasmic space] + H2O[periplasmic space] → 2 a single-stranded RNA[periplasmic space] ,
3.1.27.6: rRNA[periplasmic space] = 2 a single-stranded RNA[periplasmic space] ,
3.1.-.-: an mRNA + H2O → a single-stranded RNA + a single-stranded RNA ,
3.5.4.36: a cytosine6666 in apolipoprotein B mRNA + H+ + H2O = a uracil6666 in apolipoprotein B mRNA + ammonium ,
3.5.4.37: an adenine in double-stranded RNA + H+ + H2O = a hypoxanthine in double-stranded RNA + ammonium ,
3.6.1.59: a 5'-(N7-methyl 5'-triphosphoguanosine)-(purine-ribonucleotide)-[mRNA] + H2O = N7-methylguanosine 5'-phosphate + a 5'-diphospho-purine-[mRNA] + 2 H+ ,
3.6.1.62: a 5'-(N7-methyl 5'-triphosphoguanosine)-(purine-ribonucleotide)-[mRNA] + H2O = N7-methylguanosine 5'-diphosphate + a 5'-phosphopurine-[mRNA] + 2 H+ ,
3.6.1.-: an mRNA + H2O → a 5'-phospho-[mRNA] + diphosphate ,
5.4.99.43: uridine2819 in 21S rRNA = a 21S rRNA pseudouridine 2819 ,
6.5.1.3: ribonucleotiden + ribonucleotiden + ATP → ribonucleotidem+n + AMP + diphosphate ,
6.5.1.4: an RNA 3'-terminal-phosphate + ATP → an RNA terminal-2',3'-cyclic-phosphate + AMP + diphosphate ,
6.5.1.5: an RNA 3'-terminal-phosphate + GTP → an RNA terminal-2',3'-cyclic-phosphate + GMP + diphosphate ,
pre-crRNA → crRNA ,
an RNA terminal-2',3'-cyclic-phosphate + a 5'-hydroxyl terminated RNA + GTP → a ligated RNA + GMP + diphosphate


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Fri Dec 19, 2014, BIOCYC14B.