Metabolic Modeling Tutorial
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
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MetaCyc Reactions Class: Unknown Conversions

Summary:
Instances of this class define conversions for which it is not known whether the transformation occurs as a complex process or as a single reaction step. An example is the conversion of an inactive form of a protein to an active form, when the exact chemical forms of the protein, and the nature of the transition from one form to the other are not known. For transformations that are known to be multistep, use Complex-Processes class instead.

Parent Classes:
Reactions Classified By Conversion Type

Instances:
1.14.13.-: ent-isokaurene + NADPH + H+ + oxygen → kauralexin B1 + NADP+ + H2O ,
1.14.13.-: kauralexin B1 + NADPH + oxygen → kauralexin B3 + NADP+ + H2O + H+ ,
1.14.13.-: ent-kaurene + NADPH + H+ + oxygen → kauralexin A1 + NADP+ + H2O ,
1.14.13.-: kauralexin A1 + NADPH + oxygen → kauralexin A3 + NADP+ + H2O + H+ ,
1.14.-.-: 6-deoxotyphasterol + oxygen → typhasterol + H2O ,
1.14.-.-: triferuloyl spermidine + 3 a reduced electron acceptor + 3 oxygen → trihydroxyferuloyl spermidine + 3 an oxidized electron acceptor + 3 H2O ,
1.14.-.-: tricoumaroyl spermidine + 3 a reduced electron acceptor + 3 oxygen → tricaffeoyl spermidine + 3 an oxidized electron acceptor + 3 H2O ,
2.1.1.-: tricaffeoyl spermidine + 3 S-adenosyl-L-methionine → triferuloyl spermidine + 3 S-adenosyl-L-homocysteine + 3 H+ ,
2.3.1.-: L-ornithine → L-Nδ-acetylornithine ,
2.5.1.-: all-trans-hexaprenyl diphosphate + 1,4-dihydroxy-6-naphthoate + H+ → demethylmenaquinol-6 + CO2 + diphosphate ,
2.5.1.-: all-trans-octaprenyl diphosphate + 1,4-dihydroxy-6-naphthoate + H+ → CO2 + demethylmenaquinol-8 + diphosphate ,
3.5.4.-: 4-aminophenol + H2O + H+ → ammonium + benzene-1,4-diol ,
4.2.1.-: 2'-hydroxypyridoxol + 2 H+ → pyridoxine + H2O ,
a 8-(3-amino-5-hydroxyphenyl)-8-hydroxy-3,7-dimethyloctane-2,4,6-trione -[PKS-acp] → a 3-amino-8-[(2E)-2,4-dimethyl-5-oxohex-2-enoyl]-5,7-dihydroxy-6-methyl-1,4,5,6-tetrahydronaphthalene-1,4-dione -[PKS-acp] ,
3-benzyl-3,6 -disulfide-6-(hydroxymethyl)-diketopiperazine → N-desmethyl-gliotoxin ,
dihydrosorgoleone + oxygen → sorgoleone + H2O + H+ ,
2-methylbutanoate + pseudoisoeugenol → epoxypseudoisoeugenol-2-methylbutyrate ,
hexane-6-ol-1,3,4,6-tetracarboxylate → hexane-1,3,4,6-tetracarboxylate + H2O ,
GDP-D-erythro-α-D-gluco-octose → methylthiolincosamide ,
demethoxyfumitremorgin C → fumitremorgin C ,
3-(4-sulfophenyl)butyrate → 4-sulfoacetophenone ,
asterriquinone C1 → terrequinone A ,
fusicoccin J → fuscicoccin A ,
fusicocca-1,10(14)-diene-8β,16-diol → fusicoccin P ,
fusicocca-2,10(14)-diene → fusicocca-2,10(14)-diene-8β,16-diol ,
fusicocca-1,10(14)-diene-16-(hydroxymethyl)-3,8β-diol → brassicicene C ,
artemisinate → artemisinin ,
gentisaldehyde → isoepoxydon ,
2α-hydroxy-ent-cassadiene → 2β,3β-dihydroxy-12,15-cassadiene-11-one ,
8β-hydroxy-germacra-1(10),4,11(13)-trien-12-oate → (+)-costunolide ,
6β-hydroxy-syn-pimaradiene → 3β-hydroxy-9β-pimara-7,15-diene-19,6β-olide ,
3α-hydroxy-ent-cassadiene → 3β-hydroxy-12,15-cassadiene-11-one ,
ent-11β-hydroxycassa-12,15-diene → 3β-hydroxy-12,15-cassadiene-11-one ,
ent-2α-hydroxyisokaurene → oryzalide A ,
(-)-9β-pimara-7,15-dien-19-oate → 3β-hydroxy-9β-pimara-7,15-diene-19,6β-olide ,
12,13β-epoxy-16β-hydroxy-β-amyrin → monodeglucosyl des-acyl avenacin A ,
12,13β-epoxy-16β-hydroxy-β-amyrin = des-acyl avenacin A ,
2,4-dihydroxybenzoate + all-trans-hexaprenyl diphosphate + 2 S-adenosyl-L-methionine + 2 NADPH + 2 oxygen + H+ → 3-demethylubiquinol-6 + 2 S-adenosyl-L-homocysteine + CO2 + 2 NADP+ + diphosphate + 2 H2O ,
5-oxo-2-furoyl-CoA + H2O → (2Z)-2-hydroxypent-2-enedioyl-CoA + H+ ,
[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-(4-aminophenyl)-1-deoxy-5-[1-α -D- ribofuranosyl 5-phosphate]-D-ribitol + ATP → [1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl-(4-aminophenyl)-1-deoxy-5-[1-α -D- ribofuranosyl triphosphate]-D-ribitol + AMP ,
S-norlaudanosoline + 3 S-adenosyl-L-methionine → (S)-reticuline + 3 S-adenosyl-L-homocysteine + 3 H+ ,
dimethylsulfoniopropioyl-CoA + 2 H2O → dimethyl sulfide + 3-hydroxypropanoate + coenzyme A + 2 H+ ,
fructose 1,6-bisphosphate → norfuraneol ,
8-O-methyldihydrosterigmatocystin → aflatoxin G2 ,
versicolorin B → dihydrodemethylsterigmatocystin ,
8-O-methylsterigmatocystin → aflatoxin G1 ,
versicolorin A → 6-demethylsterigmatocystin ,
dTDP-β-L-rhamnose → dTDP-L-dihydrostreptose ,
2-oxobutanoate → 5-hydroxy-2-oxopentanoate ,
protopanaxadiol → ginsenoside Rd ,
10β-hydroxytaxa-4(20),11-dien-5α-yl acetate → 10-deacetyl-2-debenzoylbaccatin III ,
taxa-4(20),11-dien-5α,13α-diol → taxol ,
3-hydroxy-2-oxo-indole-3-acetate + 2 H+ → 3-hydroxyindolin-2-one + acetate ,
acetyl-CoA + 2 H2O → glyoxylate + coenzyme A + 5 H+ ,
6-pyruvoyl tetrahydropterin → 7,8-dihydropterin ,
lanosterol → ergosterol ,
3-phosphonomethylmalate → 2-oxo-4-phosphonobutyrate + CO2 + H+ ,
2-phosphonomethylmalate → 3-phosphonomethylmalate ,
2-methylbutanoyl-CoA → 2-methylbutanoate ,
3-amino-2-butanol + H2O + oxygen → 4 CO2 + ammonium ,
protopanaxatriol → ginsenoside Rg1 ,
oleanolate → ginsenoside Ro ,
7-dehydrocholesterol → 14α-hydroxy-cholesta-4,7-diene-3,6-dione ,
salvigenin → 8-hydroxy-salvigenin ,
5-phospho-β-D-ribosylamine → 2'-hydroxypyridoxol ,
lesqueroloyl-CoA → auricoloyl-CoA ,
densipolyl-CoA → auricoloyl-CoA ,
2,5,7-trihydroxyflavanone + H+ ↔ 2,5,7-trihydroxyflavanone dibenzoylmethane tautomer ,
(S)-n-methylcanadine → secoberbine intermediate ,
6,7-O,O-dimethyl-N-deacetylisoipecoside aglycon → protoemetine ,
2 2-imino-3-(indol-3-yl)propanoate → protodeoxyviolaceinate + ammonium + CO2 ,
G-418 + L-glutamate + oxygen → JI-20B + hydrogen peroxide + 2-oxoglutarate ,
3'-phospho-JI-20A + 2 a reduced electron acceptor → gentamicin C1a + 2 an oxidized electron acceptor + phosphate + H2O ,
gentamicin X2 + L-glutamate + oxygen → JI-20A + hydrogen peroxide + 2-oxoglutarate ,
gentamicin A2 + S-adenosyl-L-methionine + L-glutamate + oxygen → gentamicin A + S-adenosyl-L-homocysteine + hydrogen peroxide + 2-oxoglutarate + H+ ,
1-methylxanthine → 1-methylurate ,
3-methylxanthine → 3-methylurate ,
theophylline = 1,3-dimethylurate ,
Δ2,5-3,4,4-trimethylpimeloyl-CoA + 3 coenzyme A + H2O → isobutanoyl-CoA + 3 acetyl-CoA + H+ ,
L-threonate → L-tartrate ,
3-propylidene-Δ 1-pyrroline-5-carboxylate → 4-propyl-L-proline ,
4-[(1Z)-3-carboxylato-3-oxoprop-1-en-1-yl]-2,3-dihydro-1H-pyrrole-2-carboxylate → 3-propylidene-Δ 1-pyrroline-5-carboxylate ,
trans-resveratrol = astringin ,
12-oxo-cis-10,15-phytodienoate → (S)-pyrethrolone ,
chrysanthemyl diphosphate + coenzyme A + H2O → (1R,3R)-chrysanthemoyl CoA + diphosphate ,
(+)-secoisolariciresinol → justicidin B ,
4,4'-diapolycopenedioate → 4,4'-diapolycopenedioate glycosyl diester ,
benzaldehyde + NADPH + 2 oxygen + 2 H+ → 6-hydroxy-2-cyclohexen-one-carboxylate + NADP+ + H2O ,
4-aminobenzoyl-CoA → candicidin D ,
(1R)-1,2,10,10a-tetrahydrophenazine-1-carboxylate + 2 an oxidized electron acceptor → phenazine-1-carboxylate + 2 a reduced electron acceptor ,
2-hydroxynaringenin + H+ ↔ naringenin dibenzoylmethane tautomer ,
caffeine → 1,3,7-trimethylurate ,
4-(3-methylbut-2-enyl)-L-abrine + H2O → chanoclavine-I + CO2 ,
2 4-coumaroylagmatine + hydrogen peroxide → hordatine A + 2 H2O ,
3 feruloyl-CoA + spermidine → triferuloyl spermidine + 3 coenzyme A + 3 H+ ,
3 caffeoyl-CoA + spermidine → tricaffeoyl spermidine + 3 coenzyme A + 3 H+ ,
3 4-coumaryl-CoA + spermidine → tricoumaroyl spermidine + 3 coenzyme A + 3 H+ ,
(1E,6E)-1-(4-hydroxyphenyl)-7-phenylhepta-1,6-diene-3,5-dione + 2 a reduced electron acceptor → (4E,6E)-1-(4-hydroxyphenyl)-7-phenylhepta-4,6-dien-3-one + 2 an oxidized electron acceptor + H2O ,
Se-methyl-L-selenocysteine → dimethyl diselenide ,
5'-α-carboxylmethylbutylhydroxychroman → α-carboxyethylhydroxychroman ,
13'-hydroxy-α-tocopherol → 5'-α-carboxylmethylbutylhydroxychroman ,
2'-O-methyllicodione → echinatin ,
hexaketide pyrone + β-D-glucose → aloenin ,
presilphiperfolan-8β-ol + 2 oxygen → botrydial ,
3,5,3'-triiodo-L-thyronine → thyronamine ,
L-thyroxine = 3-iodothyronamine ,
an alkane → a secondary alcohol ,
anthraniloyl-CoA ↔ benzoyl-CoA + ammonium


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Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Sat Dec 20, 2014, biocyc11.