Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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MetaCyc Organism: Arabidopsis thaliana col

Synonyms: Arabidopsis thaliana col

Rank: strain

Taxonomic lineage: cellular organisms , Eukaryota , Viridiplantae , Streptophyta , Streptophytina , Embryophyta , Tracheophyta , Euphyllophyta , Spermatophyta , Magnoliophyta , Mesangiospermae , eudicotyledons , Gunneridae , Pentapetalae , rosids , malvids , Brassicales , Brassicaceae , Camelineae , Arabidopsis , Arabidopsis thaliana

PGDBs of organism: Arabidopsis thaliana col


Pathways present in Arabidopsis thaliana or one of its sub-taxa (390).
These pathways were observed experimentally in this taxon or one of its sub-taxa:
1,4-dihydroxy-2-naphthoate biosynthesis II (plants) ,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3) ,
2,3-cis-flavanols biosynthesis ,
2,4,6-trinitrotoluene degradation ,
(3E)-4,8-dimethylnona-1,3,7-triene biosynthesis ,
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis ,
4-aminobenzoate biosynthesis ,
4-hydroxyphenylpyruvate biosynthesis ,
5-aminoimidazole ribonucleotide biosynthesis I ,
5-deoxystrigol biosynthesis ,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I ,
abscisic acid biosynthesis ,
abscisic acid glucose ester biosynthesis ,
acetyl-CoA biosynthesis III (from citrate) ,
acyl-ACP thioesterase pathway ,
acyl-CoA hydrolysis ,
adenine and adenosine salvage II ,
adenine and adenosine salvage II ,
adenosine nucleotides degradation I ,
aerobic respiration I (cytochrome c) ,
aerobic respiration III (alternative oxidase pathway) ,
aliphatic glucosinolate biosynthesis, side chain elongation cycle ,
alkane oxidation ,
allantoin degradation to glyoxylate II ,
allantoin degradation to ureidoglycolate II (ammonia producing) ,
α-amyrin biosynthesis ,
α-linolenate biosynthesis ,
ammonia assimilation cycle I ,
ammonia assimilation cycle II ,
anthocyanidin modification (Arabidopsis) ,
anthocyanin biosynthesis (cyanidin 3-O-glucoside) ,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside) ,
arabidiol biosynthesis ,
arginine degradation I (arginase pathway) ,
arginine degradation V (arginine deiminase pathway) ,
ascorbate glutathione cycle ,
baruol biosynthesis ,
benzoate biosynthesis II (CoA-independent, non-β-oxidative) ,
benzoyl-β-D-glucopyranose biosynthesis ,
benzoyl-CoA biosynthesis ,
β-alanine biosynthesis I ,
β-carotene biosynthesis ,
β-caryophyllene biosynthesis ,
biotin biosynthesis from 8-amino-7-oxononanoate I ,
biotin-carboxyl carrier protein assembly ,
brassinosteroid biosynthesis I ,
brassinosteroid biosynthesis II ,
brassinosteroids inactivation ,
callose biosynthesis ,
Calvin-Benson-Bassham cycle ,
camalexin biosynthesis ,
cardiolipin biosynthesis II ,
carotenoid cleavage ,
CDP-diacylglycerol biosynthesis I ,
CDP-diacylglycerol biosynthesis II ,
cellulose biosynthesis ,
ceramide degradation ,
chlorophyll a biosynthesis I ,
chlorophyll a biosynthesis II ,
chlorophyll a degradation I ,
chlorophyll a degradation II ,
chlorophyll cycle ,
chlorophyllide a biosynthesis I (aerobic, light-dependent) ,
choline biosynthesis I ,
choline biosynthesis III ,
chorismate biosynthesis I ,
cis-zeatin biosynthesis ,
citrulline degradation ,
CMP-KDO biosynthesis II (from D-arabinose 5-phosphate) ,
CMP phosphorylation ,
CO2 fixation into oxaloacetate (anapleurotic) ,
coenzyme A biosynthesis I ,
coniferin metabolism ,
coumarins biosynthesis (engineered) ,
cuticular wax biosynthesis ,
cutin biosynthesis ,
cyanate degradation ,
cyanide detoxification I ,
cysteine biosynthesis I ,
cytokinin-O-glucosides biosynthesis ,
cytokinins 7-N-glucoside biosynthesis ,
cytokinins 9-N-glucoside biosynthesis ,
cytokinins degradation ,
δ-carotene biosynthesis ,
detoxification of reactive carbonyls in chloroplasts ,
diacylglycerol biosynthesis (PUFA enrichment in oilseed) ,
D-myo-inositol (1,3,4)-trisphosphate biosynthesis ,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis ,
D-myo-inositol (1,4,5)-trisphosphate degradation ,
D-myo-inositol-5-phosphate metabolism ,
D-sorbitol degradation I ,
dTDP-L-rhamnose biosynthesis II ,
(E,E)-4,8,12-trimethyltrideca-1,3,7,11-tetraene biosynthesis ,
ent-kaurene biosynthesis I ,
epoxysqualene biosynthesis ,
esterified suberin biosynthesis ,
ethylene biosynthesis I (plants) ,
extended VTC2 cycle ,
farnesene biosynthesis ,
farnesylcysteine salvage pathway ,
fatty acid activation ,
fatty acid α-oxidation I ,
fatty acid β-oxidation III (unsaturated, odd number) ,
fatty acid β-oxidation II (peroxisome) ,
fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) ,
fatty acid biosynthesis initiation I ,
fatty acid biosynthesis (plant mitochondria) ,
fatty acid elongation -- saturated ,
ferulate and sinapate biosynthesis ,
flavin biosynthesis I (bacteria and plants) ,
flavonoid biosynthesis ,
flavonol biosynthesis ,
folate polyglutamylation ,
folate transformations II ,
free phenylpropanoid acid biosynthesis ,
GA12 biosynthesis ,
galactose degradation III ,
galactose degradation I (Leloir pathway) ,
gallate biosynthesis ,
GDP-glucose biosynthesis ,
GDP-L-fucose biosynthesis I (from GDP-D-mannose) ,
GDP-L-fucose biosynthesis II (from L-fucose) ,
GDP-L-galactose biosynthesis ,
GDP-mannose biosynthesis ,
geranyl diphosphate biosynthesis ,
gibberellin biosynthesis II (early C-3 hydroxylation) ,
gibberellin biosynthesis III (early C-13 hydroxylation) ,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation) ,
gibberellin inactivation I (2β-hydroxylation) ,
gibberellin inactivation II (methylation) ,
gluconeogenesis I ,
glucosinolate biosynthesis from dihomomethionine ,
glucosinolate biosynthesis from hexahomomethionine ,
glucosinolate biosynthesis from homomethionine ,
glucosinolate biosynthesis from pentahomomethionine ,
glucosinolate biosynthesis from phenylalanine ,
glucosinolate biosynthesis from tetrahomomethionine ,
glucosinolate biosynthesis from trihomomethionine ,
glucosinolate biosynthesis from tryptophan ,
glucosinolate breakdown ,
glutamate and glutamine biosynthesis ,
glutamate biosynthesis V ,
glutamate degradation I ,
glutamate degradation IV ,
glutamate removal from folates ,
glutamine biosynthesis III ,
glutathione biosynthesis ,
glutathione-mediated detoxification II ,
glycerol-3-phosphate shuttle ,
glycerol degradation I ,
glycine betaine biosynthesis III (plants) ,
glycine biosynthesis I ,
glycolipid biosynthesis ,
glycolipid desaturation ,
glycolysis I (from glucose 6-phosphate) ,
glycolysis IV (plant cytosol) ,
glyoxylate cycle ,
guanosine deoxyribonucleotides de novo biosynthesis I ,
guanosine nucleotides degradation I ,
guanosine nucleotides degradation II ,
heme biosynthesis I (aerobic) ,
histidine biosynthesis ,
homogalacturonan biosynthesis ,
homogalacturonan degradation ,
homomethionine biosynthesis ,
hydroxyjasmonate sulfate biosynthesis ,
hydroxylated fatty acid biosynthesis (plants) ,
hydroxymethylpyrimidine salvage ,
indole-3-acetate activation I ,
indole-3-acetate biosynthesis I ,
indole-3-acetate biosynthesis II ,
indole-3-acetate degradation IV ,
indole-3-acetate degradation V ,
indole-3-acetyl-amide conjugate biosynthesis ,
indole glucosinolate breakdown (active in intact plant cell) ,
indole glucosinolate breakdown (insect chewing induced) ,
iron reduction and absorption ,
jasmonic acid biosynthesis ,
jasmonoyl-amino acid conjugates biosynthesis I ,
kaempferol glycoside biosynthesis (Arabidopsis) ,
L-ascorbate biosynthesis II (L-gulose pathway) ,
L-ascorbate biosynthesis I (L-galactose pathway) ,
leucodelphinidin biosynthesis ,
leucopelargonidin and leucocyanidin biosynthesis ,
L-glutamine biosynthesis II (tRNA-dependent) ,
linoleate biosynthesis I (plants) ,
L-Nδ-acetylornithine biosynthesis ,
lupeol biosynthesis ,
lutein biosynthesis ,
luteolin biosynthesis ,
lysine biosynthesis VI ,
marneral biosynthesis ,
methionine biosynthesis II ,
methionine degradation II ,
methionine salvage cycle II (plants) ,
methylerythritol phosphate pathway II ,
methylhalides biosynthesis (plants) ,
methyl indole-3-acetate interconversion ,
methylquercetin biosynthesis ,
mevalonate pathway I ,
molybdenum cofactor biosynthesis ,
monolignol glucosides biosynthesis ,
monoterpene biosynthesis ,
myo-inositol biosynthesis ,
NAD biosynthesis I (from aspartate) ,
NAD/NADH phosphorylation and dephosphorylation ,
nitrate reduction II (assimilatory) ,
nonaprenyl diphosphate biosynthesis II ,
oleate biosynthesis I (plants) ,
oxidized GTP and dGTP detoxification ,
palmitate biosynthesis II (bacteria and plants) ,
palmitoleate biosynthesis II ,
pantothenate and coenzyme A biosynthesis III ,
pantothenate and coenzyme A biosynthesis II (plants) ,
pentacyclic triterpene biosynthesis ,
pentose phosphate pathway ,
phaseic acid biosynthesis ,
phenolic malonylglucosides biosynthesis ,
phenylalanine biosynthesis II ,
phenylpropanoid biosynthesis ,
phenylpropanoid biosynthesis, initial reactions ,
phosphate acquisition ,
phosphatidate metabolism, as a signaling molecule ,
phosphatidylcholine biosynthesis II ,
phosphatidylethanolamine biosynthesis I ,
phosphatidylethanolamine biosynthesis II ,
phosphatidylethanolamine biosynthesis III ,
phosphatidylglycerol biosynthesis II (non-plastidic) ,
phosphatidylglycerol biosynthesis I (plastidic) ,
phospholipases ,
phospholipid biosynthesis II ,
phospholipid desaturation ,
phosphopantothenate biosynthesis I ,
photorespiration ,
photosynthesis light reactions ,
phylloquinol biosynthesis ,
phytochromobilin biosynthesis ,
phytol salvage pathway ,
phytyl diphosphate biosynthesis ,
plant sterol biosynthesis ,
plastoquinol-9 biosynthesis I ,
poly-hydroxy fatty acids biosynthesis ,
proline biosynthesis III ,
proline degradation ,
PRPP biosynthesis I ,
purine deoxyribonucleosides salvage ,
purine nucleotides degradation I (plants) ,
putrescine biosynthesis II ,
putrescine biosynthesis III ,
putrescine biosynthesis IV ,
putrescine degradation IV ,
pyridoxal 5'-phosphate biosynthesis II ,
pyridoxal 5'-phosphate salvage I ,
pyrimidine deoxyribonucleosides salvage ,
pyrimidine deoxyribonucleotide phosphorylation ,
pyrimidine deoxyribonucleotides de novo biosynthesis I ,
pyrimidine nucleobases salvage I ,
pyrimidine ribonucleosides salvage I ,
pyrimidine ribonucleosides salvage II ,
quercetin glycoside biosynthesis (Arabidopsis) ,
quercetin sulfate biosynthesis ,
Rubisco shunt ,
S-adenosyl-L-methionine biosynthesis ,
S-adenosyl-L-methionine cycle II ,
salicylate biosynthesis I ,
salicylate biosynthesis II ,
salicylate glucosides biosynthesis I ,
salicylate glucosides biosynthesis II ,
salicylate glucosides biosynthesis III ,
salicylate glucosides biosynthesis IV ,
scopoletin biosynthesis ,
selenate reduction ,
seleno-amino acid biosynthesis ,
seleno-amino acid detoxification and volatilization I ,
serine biosynthesis ,
serine racemization ,
sinapate ester biosynthesis ,
S-methyl-5'-thioadenosine degradation I ,
S-methyl-5-thio-α-D-ribose 1-phosphate degradation ,
S-methylmethionine cycle ,
spermidine biosynthesis I ,
spermidine hydroxycinnamic acid conjugates biosynthesis ,
spermine and spermidine degradation III ,
spermine biosynthesis ,
sphingolipid biosynthesis (plants) ,
sporopollenin precursor biosynthesis ,
stachyose biosynthesis ,
starch biosynthesis ,
starch degradation II ,
stearate biosynthesis II (bacteria and plants) ,
suberin monomers biosynthesis ,
sucrose biosynthesis I (from photosynthesis) ,
sucrose biosynthesis II ,
sucrose degradation III (sucrose invertase) ,
sucrose degradation II (sucrose synthase) ,
sulfate activation for sulfonation ,
sulfate reduction II (assimilatory) ,
sulfite oxidation IV ,
sulfolipid biosynthesis ,
sulfur volatiles biosynthesis ,
superoxide radicals degradation ,
superpathay of heme biosynthesis from glutamate ,
superpathway of 1D-myo-inositol hexakisphosphate biosynthesis (plants) ,
superpathway of acetyl-CoA biosynthesis ,
superpathway of adenosine nucleotides de novo biosynthesis I ,
superpathway of allantoin degradation in plants ,
superpathway of ammonia assimilation (plants) ,
superpathway of anaerobic sucrose degradation ,
superpathway of C28 brassinosteroid biosynthesis ,
superpathway of carotenoid biosynthesis ,
superpathway of choline biosynthesis ,
superpathway of citrulline metabolism ,
superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle ,
superpathway of fatty acid biosynthesis II (plant) ,
superpathway of flavones and derivatives biosynthesis ,
superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) ,
superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) ,
superpathway of gibberellin biosynthesis ,
superpathway of gibberellin GA12 biosynthesis ,
superpathway of glyoxylate cycle and fatty acid degradation ,
superpathway of guanosine nucleotides degradation (plants) ,
superpathway of guanosine nucleotides de novo biosynthesis I ,
superpathway of indole-3-acetate conjugate biosynthesis ,
superpathway of jasmonoyl-amino acid conjugates biosynthesis ,
superpathway of lipoxygenase ,
superpathway of lysine, threonine and methionine biosynthesis II ,
superpathway of phenylalanine and tyrosine biosynthesis ,
superpathway of phosphatidylcholine biosynthesis ,
superpathway of phylloquinol biosynthesis ,
superpathway of plastoquinol biosynthesis ,
superpathway of polyamine biosynthesis II ,
superpathway of purine nucleotides de novo biosynthesis I ,
superpathway of purines degradation in plants ,
superpathway of pyrimidine deoxyribonucleoside salvage ,
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis ,
superpathway of pyrimidine nucleobases salvage ,
superpathway of pyrimidine ribonucleosides salvage ,
superpathway of pyrimidine ribonucleotides de novo biosynthesis ,
superpathway of seleno-compound metabolism ,
superpathway of tetrahydrofolate biosynthesis ,
superpathway of thiamin diphosphate biosynthesis III (eukaryotes) ,
TCA cycle II (plants and fungi) ,
tetrahydrofolate biosynthesis ,
tetrapyrrole biosynthesis I (from glutamate) ,
thalianol and derivatives biosynthesis ,
thiamin diphosphate biosynthesis IV (eukaryotes) ,
thiazole biosynthesis III (eukaryotes) ,
thio-molybdenum cofactor biosynthesis ,
thymine degradation ,
trans-cinnamoyl-CoA biosynthesis ,
trans-lycopene biosynthesis II (plants) ,
trans, trans-farnesyl diphosphate biosynthesis ,
trans-zeatin biosynthesis ,
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis ,
triacylglycerol biosynthesis ,
triacylglycerol degradation ,
tryptophan biosynthesis ,
tryptophan degradation VI (via tryptamine) ,
tyrosine biosynthesis II ,
ubiquinol-9 biosynthesis (eukaryotic) ,
UDP-α-D-glucuronate biosynthesis (from myo-inositol) ,
UDP-α-D-glucuronate biosynthesis (from UDP-glucose) ,
UDP-D-apiose biosynthesis (from UDP-D-glucuronate) ,
UDP-D-galactose biosynthesis ,
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) ,
UDP-D-xylose biosynthesis ,
UDP-glucose biosynthesis ,
UDP-L-arabinose biosynthesis I (from UDP-xylose) ,
UDP-L-arabinose biosynthesis II (from L-arabinose) ,
UDP-L-rhamnose biosynthesis ,
UDP-N-acetyl-D-glucosamine biosynthesis II ,
UDP-sugars interconversion ,
UMP biosynthesis ,
unsaturated, even numbered fatty acid β-oxidation ,
uracil degradation I (reductive) ,
urate degradation to allantoin I ,
UTP and CTP de novo biosynthesis ,
UTP and CTP dephosphorylation I ,
UTP and CTP dephosphorylation II ,
valine degradation I ,
very long chain fatty acid biosynthesis I ,
very long chain fatty acid biosynthesis II ,
vitamin E biosynthesis (tocopherols) ,
vitamin E biosynthesis (tocotrienols) ,
volatile benzenoid biosynthesis I (ester formation) ,
VTC2 cycle ,
xylogalacturonan biosynthesis ,
xyloglucan biosynthesis ,
zeaxanthin, antheraxanthin and violaxanthin interconversion ,
zeaxanthin biosynthesis

Additional pathways which may be present in Arabidopsis thaliana and all its sub-taxa (500)
These pathways were inferred using their expected taxonomic range:
(+)-camphor biosynthesis ,
(+)-secoisolariciresinol diglucoside biosynthesis ,
(1,4)-β-xylan degradation ,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) ,
2,3-trans-flavanols biosynthesis ,
26,27-dehydrozymosterol metabolism ,
[2Fe-2S] iron-sulfur cluster biosynthesis ,
2-O-acetyl-3-O-trans-coutarate biosynthesis ,
2-oxobutanoate degradation I ,
2-oxoglutarate decarboxylation to succinyl-CoA ,
2-oxoisovalerate decarboxylation to isobutanoyl-CoA ,
3,4-dihydroxymandelonitrile β-D-glucose biosynthesis ,
3,5-dimethoxytoluene biosynthesis ,
3β-hydroxysesquiterpene lactone biosynthesis ,
3-carene biosynthesis ,
3-dehydroquinate biosynthesis I ,
3-methylthiopropanoate biosynthesis ,
3-phosphoinositide biosynthesis ,
3-phosphoinositide degradation ,
4-aminobutyrate degradation ,
4-aminobutyrate degradation IV ,
4-hydroxybenzoate biosynthesis I (eukaryotes) ,
4-hydroxybenzoate biosynthesis IV ,
4-hydroxybenzoate biosynthesis V ,
4-hydroxycoumarin and dicoumarol biosynthesis ,
6'-deoxychalcone metabolism ,
9-lipoxygenase and 9-allene oxide synthase pathway ,
9-lipoxygenase and 9-hydroperoxide lyase pathway ,
abscisic acid biosynthesis shunt ,
acacetin biosynthesis ,
acetaldehyde biosynthesis I ,
acetaldehyde biosynthesis II ,
acetoin biosynthesis III ,
acylated cyanidin galactoside biosynthesis ,
acyl carrier protein metabolism II (mammalian) ,
adenine and adenosine salvage III ,
adenosine 5'-phosphoramidate biosynthesis ,
adenosine deoxyribonucleotides de novo biosynthesis ,
adenosine nucleotides degradation II ,
adenosine ribonucleotides de novo biosynthesis ,
afrormosin conjugates interconversion ,
ajugose biosynthesis II (galactinol-independent) ,
alanine biosynthesis II ,
alanine biosynthesis III ,
alanine degradation III ,
alanine degradation II (to D-lactate) ,
alkane biosynthesis II ,
allantoin degradation to glyoxylate III ,
allantoin degradation to ureidoglycolate I (urea producing) ,
all-trans-decaprenyl diphosphate biosynthesis ,
all-trans-farnesol biosynthesis ,
all trans undecaprenyl diphosphate biosynthesis ,
aloesone biosynthesis I ,
α-eleostearic acid biosynthesis ,
anthocyanidin 3-malylglucoside biosynthesis (acyl-glucose dependent) ,
anthocyanidin sophoroside metabolism ,
anthocyanin biosynthesis (delphinidin 3-O-glucoside) ,
anthranilate degradation IV (aerobic) ,
apigenin glycosides biosynthesis ,
apigeninidin 5-O-glucoside biosynthesis ,
arginine biosynthesis II (acetyl cycle) ,
arginine biosynthesis I (via L-ornithine) ,
arginine degradation VI (arginase 2 pathway) ,
arginine degradation X (arginine monooxygenase pathway) ,
asparagine biosynthesis I ,
asparagine biosynthesis II ,
asparagine degradation I ,
asparagine degradation II ,
aspartate biosynthesis ,
aspartate degradation I ,
astaxanthin biosynthesis ,
baicalein degradation (hydrogen peroxide detoxification) ,
baicalein metabolism ,
barbaloin biosynthesis ,
benzoate biosynthesis I (CoA-dependent, β-oxidative) ,
benzoate biosynthesis III (CoA-dependent, non-β-oxidative) ,
bergamotene biosynthesis I ,
bergamotene biosynthesis II ,
β-alanine biosynthesis II ,
beta-carboline biosynthesis ,
β-carotene biosynthesis (engineered) ,
β-cubebene biosynthesis ,
betulinate biosynthesis ,
bisabolene biosynthesis ,
bisbenzylisoquinoline alkaloid biosynthesis ,
bixin biosynthesis ,
C4 photosynthetic carbon assimilation cycle, NAD-ME type ,
C4 photosynthetic carbon assimilation cycle, NADP-ME type ,
caffeoylglucarate biosynthesis ,
calendate biosynthesis ,
(-)-camphor biosynthesis ,
canthaxanthin biosynthesis ,
capsanthin and capsorubin biosynthesis ,
ceramide de novo biosynthesis ,
C-glycosylflavone biosynthesis I ,
C-glycosylflavone biosynthesis II ,
C-glycosylflavone biosynthesis III ,
chitin degradation II ,
chlorogenic acid biosynthesis I ,
chlorogenic acid biosynthesis II ,
chlorogenic acid degradation ,
choline biosynthesis II ,
choline degradation I ,
chorismate biosynthesis from 3-dehydroquinate ,
chrysoeriol biosynthesis ,
chrysophanol biosynthesis ,
cichoriin interconversion ,
cinnamate esters biosynthesis ,
cis-calamenene related sesquiterpenoids biosynthesis ,
cis-vaccenate biosynthesis ,
CMP-2-keto-3-deoxy-D-glycero-D-galacto-nononate biosynthesis ,
CMP-N-acetylneuraminate biosynthesis I (eukaryotes) ,
CMP-N-glycoloylneuraminate biosynthesis ,
cornusiin E biosynthesis ,
costunolide biosynthesis ,
coumarin biosynthesis (via 2-coumarate) ,
coumarin metabolism (to melilotic acid) ,
crepenynate biosynthesis ,
curcumene biosynthesis ,
curcumin glucoside biosynthesis ,
cyanide degradation ,
cyanidin 3,7-diglucoside polyacylation biosynthesis ,
cyanidin diglucoside biosynthesis (acyl-glucose dependent) ,
cyclopropane and cyclopropene fatty acid biosynthesis ,
dammara-20,24-diene biosynthesis ,
daphnetin modification ,
daphnin interconversion ,
dehydroscoulerine biosynthesis ,
delphinidin diglucoside biosynthesis (acyl-glucose dependent) ,
Δ5-eicosenoate biosynthesis ,
Δ6-hexadecenoate biosynthesis ,
δ-guaiene biosynthesis ,
dhurrin biosynthesis ,
dhurrin degradation ,
diacylglyceryl-N,N,N-trimethylhomoserine biosynthesis ,
DIBOA-glucoside biosynthesis ,
dihydroconiferyl alcohol biosynthesis ,
DIMBOA-glucoside biosynthesis ,
dimethylsulfoniopropionate biosynthesis II (Spartina) ,
dimethylsulfoniopropionate biosynthesis I (Wollastonia) ,
dimethylsulfoniopropionate degradation I (cleavage) ,
dimethyl sulfoxide degradation ,
dimorphecolate biosynthesis ,
diphthamide biosynthesis (eukaryotes) ,
diphyllin biosynthesis ,
divinyl ether biosynthesis I ,
divinyl ether biosynthesis II ,
D-mannose degradation ,
D-myo-inositol (1,4,5,6)-tetrakisphosphate biosynthesis ,
D-myo-inositol (3,4,5,6)-tetrakisphosphate biosynthesis ,
docosahexanoate biosynthesis I ,
docosahexanoate biosynthesis II ,
dolichyl-diphosphooligosaccharide biosynthesis ,
D-serine degradation ,
D-sorbitol degradation II ,
Entner-Doudoroff pathway I ,
epoxy fatty acid biosynthesis ,
esculetin biosynthesis ,
esculetin modification ,
ethanol degradation II ,
eudesmol biosynthesis ,
eugenol and isoeugenol biosynthesis ,
eumelanin biosynthesis ,
eupatolitin 3-O-glucoside biosynthesis ,
fenchol biosynthesis I ,
fenchone biosynthesis ,
flavonoid biosynthesis (in equisetum) ,
flavonol acylglucoside biosynthesis III - quercetin derivatives ,
flavonol acylglucoside biosynthesis II - isorhamnetin derivatives ,
flavonol acylglucoside biosynthesis I - kaempferol derivatives ,
fluoroacetate and fluorothreonine biosynthesis ,
folate transformations I ,
formaldehyde oxidation II (glutathione-dependent) ,
fructan biosynthesis ,
fructan degradation ,
furaneol biosynthesis ,
furcatin degradation ,
gallotannin biosynthesis ,
galloylated catechin biosynthesis ,
γ-coniciene and coniine biosynthesis ,
γ-linolenate biosynthesis I (plants) ,
genistin gentiobioside biosynthesis ,
gentiodelphin biosynthesis ,
geodin biosynthesis ,
geraniol and geranial biosynthesis ,
geranyl acetate biosynthesis ,
geranylgeranyl diphosphate biosynthesis ,
germacrene biosynthesis ,
gibberellin biosynthesis V ,
gibberellin inactivation III (epoxidation) ,
glucose and glucose-1-phosphate degradation ,
glucosinolate breakdown (via thiocyanate-forming protein) ,
glutamate biosynthesis I ,
glutamate biosynthesis IV ,
glutamine biosynthesis I ,
glutamine degradation I ,
glutathione redox reactions I ,
glutathione redox reactions II ,
glutathionylspermidine biosynthesis ,
glycerol degradation V ,
glycine betaine degradation I ,
glycine biosynthesis III ,
glycine cleavage ,
glycogen degradation I ,
glycogen degradation III ,
glycolysis II (from fructose 6-phosphate) ,
gossypetin metabolism ,
guanine and guanosine salvage II ,
guanine and guanosine salvage III ,
heme degradation ,
heptadecane biosynthesis ,
heptaprenyl diphosphate biosynthesis ,
hesperitin glycoside biosynthesis ,
hexaprenyl diphosphate biosynthesis ,
homocysteine and cysteine interconversion ,
homolactic fermentation ,
homoserine biosynthesis ,
homospermidine biosynthesis ,
hydroxycinnamate sugar acid ester biosynthesis ,
hydroxycinnamic acid serotonin amides biosynthesis ,
hydroxycinnamic acid tyramine amides biosynthesis ,
hyperxanthone E biosynthesis ,
hypoglycin biosynthesis ,
hypusine biosynthesis ,
indican biosynthesis ,
indigo biosynthesis ,
indole-3-acetate activation II ,
indole-3-acetate conjugate biosynthesis II ,
indole-3-acetate degradation I ,
indole-3-acetate degradation II ,
indole-3-acetate degradation III ,
indole-3-acetate degradation VI ,
indole-3-acetate degradation VII ,
indole-3-acetyl-ester conjugate biosynthesis ,
indole degradation to anthranil and anthranilate ,
inosine-5'-phosphate biosynthesis II ,
inositol pyrophosphates biosynthesis ,
isoflavonoid biosynthesis II ,
isoleucine biosynthesis I ,
isoleucine biosynthesis I (from threonine) ,
isoleucine degradation I ,
isoprene biosynthesis I ,
isoprene biosynthesis II (engineered) ,
isovitexin and isovitexin glycosides biosynthesis ,
jasmonoyl-amino acid conjugates biosynthesis II ,
justicidin B biosynthesis ,
kaempferide triglycoside biosynthesis ,
kaempferol diglycoside biosynthesis (pollen-specific) ,
kaempferol gentiobioside biosynthesis ,
kauralexin biosynthesis ,
(KDO)2-lipid A biosynthesis I ,
KDO transfer to lipid IVA I ,
lactucaxanthin biosynthesis ,
laminaribiose degradation ,
L-ascorbate degradation III ,
L-ascorbate degradation IV ,
L-ascorbate degradation V ,
lawsone biosynthesis ,
L-carnitine biosynthesis ,
L-cysteine degradation II ,
L-dopachrome biosynthesis ,
leucine biosynthesis ,
leucine degradation I ,
linalool biosynthesis I ,
linalool biosynthesis II ,
linear furanocoumarin biosynthesis ,
linustatin bioactivation ,
lipid IVA biosynthesis ,
lipoate biosynthesis and incorporation I ,
L-sorbose degradation ,
lupinate biosynthesis ,
luteolin glycosides biosynthesis ,
luteolinidin 5-O-glucoside biosynthesis ,
luteolin triglucuronide biosynthesis ,
luteolin triglucuronide degradation ,
lysine degradation II (mammalian) ,
magnoflorine biosynthesis ,
mannitol biosynthesis ,
mannitol degradation II ,
mannosyl-glycoprotein N-acetylglucosaminyltransferases ,
matairesinol biosynthesis ,
melibiose degradation ,
methionine degradation I (to homocysteine) ,
methionine salvage cycle I (bacteria and plants) ,
methylglyoxal degradation II ,
methylglyoxal degradation III ,
methylglyoxal degradation VII ,
methyl ketone biosynthesis ,
mitochondrial L-carnitine shuttle ,
momilactone A biosynthesis ,
monoacylglycerol metabolism (yeast) ,
myricetin gentiobioside biosynthesis ,
NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde ,
NAD biosynthesis II (from tryptophan) ,
NADH repair ,
naringenin biosynthesis (engineered) ,
naringenin glycoside biosynthesis ,
neolinustatin bioactivation ,
neoxanthin biosynthesis ,
nevadensin biosynthesis ,
N-glucosylnicotinate metabolism ,
nicotianamine biosynthesis ,
nitric oxide biosynthesis (plants) ,
nonaprenyl diphosphate biosynthesis I ,
noscapine biosynthesis ,
octanoyl-ACP biosynthesis (mitochondria, yeast) ,
octaprenyl diphosphate biosynthesis ,
o-diquinones biosynthesis ,
oleanolate biosynthesis ,
oligomeric urushiol biosynthesis ,
ω-hydroxylation of caprate and laurate ,
ω- hydroxylation of laurate ,
oryzalexin D and E biosynthesis ,
oryzalide A biosynthesis ,
oxalate biosynthesis ,
oxalate degradation IV ,
oxygenic photosynthesis ,
palmatine biosynthesis ,
papaverine biosynthesis ,
patchoulol biosynthesis ,
pelargonidin conjugates biosynthesis ,
pelargonidin diglucoside biosynthesis (acyl-glucose dependent) ,
pentagalloylglucose biosynthesis ,
pentaketide chromone biosynthesis ,
pentose phosphate pathway (non-oxidative branch) ,
pentose phosphate pathway (oxidative branch) I ,
petroselinate biosynthesis ,
phenylalanine biosynthesis (cytosolic, plants) ,
phenylalanine degradation V ,
phenylethanol biosynthesis ,
phenylethanol glycoconjugate biosynthesis ,
phenylethyl acetate biosynthesis ,
phenylpropanoids methylation (ice plant) ,
phloridzin biosynthesis ,
phosphate utilization in cell wall regeneration ,
phosphatidylcholine acyl editing ,
phosphatidylcholine biosynthesis I ,
phosphatidylcholine biosynthesis III ,
phosphatidylcholine biosynthesis IV ,
phosphatidylcholine resynthesis via glycerophosphocholine ,
phospholipid remodeling (phosphatidate, yeast) ,
phospholipid remodeling (phosphatidylcholine, yeast) ,
phospholipid remodeling (phosphatidylethanolamine, yeast) ,
phosphopantothenate biosynthesis II ,
phytate degradation I ,
phytate degradation II ,
phytocassanes biosynthesis, shared reactions ,
phytochelatins biosynthesis ,
pinitol biosynthesis I ,
pinitol biosynthesis II ,
pinobanksin biosynthesis ,
pinolenic acid and coniferonic acid biosynthesis ,
pinosylvin metabolism ,
plaunotol biosynthesis ,
plumbagin biosynthesis ,
podophyllotoxin and 6-methoxypodophyllotoxin biosynthesis ,
podophyllotoxin glucosides metabolism ,
polyisoprenoid biosynthesis (E. coli) ,
polymethylated kaempferol biosynthesis ,
polymethylated myricetin biosynthesis (tomato) ,
polymethylated quercetin biosynthesis ,
polymethylated quercetin glucoside biosynthesis II - quercetagetin series (Chrysosplenium) ,
polymethylated quercetin glucoside biosynthesis I - quercetin series (Chrysosplenium) ,
polyvinyl alcohol degradation ,
proanthocyanidin biosynthesis from flavanols ,
proline biosynthesis II (from arginine) ,
proline biosynthesis IV ,
propionyl CoA degradation ,
protein O-[N-acetyl]-glucosylation ,
protein ubiquitination ,
pseudouridine degradation ,
pterostilbene biosynthesis ,
punicic acid biosynthesis ,
pyridine nucleotide cycling (plants) ,
pyridoxal 5'-phosphate salvage II (plants) ,
pyrimidine deoxyribonucleotides dephosphorylation ,
pyruvate decarboxylation to acetyl CoA ,
pyruvate fermentation to acetate VII ,
pyruvate fermentation to butanol II ,
pyruvate fermentation to ethanol II ,
pyruvate fermentation to hexanol ,
pyruvate fermentation to isobutanol (engineered) ,
pyruvate fermentation to lactate ,
quercetin diglycoside biosynthesis (pollen-specific) ,
quercetin gentiotetraside biosynthesis ,
quercetin glucoside biosynthesis (Allium) ,
quercetin glucoside degradation (Allium) ,
raspberry ketone biosynthesis ,
(R)-canadine biosynthesis ,
resveratrol biosynthesis ,
ricinine degradation ,
ricinoleate biosynthesis ,
rosmarinic acid biosynthesis I ,
rosmarinic acid biosynthesis II ,
rubber biosynthesis ,
rutin biosynthesis ,
rutin degradation (plants) ,
sakuranetin biosynthesis ,
salidroside biosynthesis ,
salvianin biosynthesis ,
salvigenin biosynthesis ,
sanguinarine and macarpine biosynthesis ,
santalene biosynthesis I ,
saponin biosynthesis II ,
saponin biosynthesis III ,
saponin biosynthesis IV ,
sciadonate biosynthesis ,
sedoheptulose bisphosphate bypass ,
seed germination protein turnover ,
seleno-amino acid detoxification and volatilization II ,
seleno-amino acid detoxification and volatilization III ,
selenocysteine biosynthesis II (archaea and eukaryotes) ,
selinene biosynthesis ,
serinol biosynthesis ,
serotonin and melatonin biosynthesis ,
sesamin biosynthesis ,
sesquiterpenoid phytoalexins biosynthesis ,
shisonin biosynthesis ,
siroheme biosynthesis ,
soybean saponin I biosynthesis ,
spermine and spermidine degradation II ,
sphingomyelin metabolism ,
stachyose degradation ,
sterol:steryl ester interconversion (yeast) ,
steviol biosynthesis ,
steviol glucoside biosynthesis (rebaudioside A biosynthesis) ,
superpathway of adenosine nucleotides de novo biosynthesis II ,
superpathway of alliin degradation ,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside) ,
superpathway of anthocyanin biosynthesis (from delphinidin 3-O-glucoside) ,
superpathway of anthocyanin biosynthesis (from pelargonidin 3-O-glucoside) ,
superpathway of asparagine biosynthesis ,
superpathway of benzoxazinoid glucosides biosynthesis ,
superpathway of betalain biosynthesis ,
superpathway of dimethylsulfoniopropionate degradation ,
superpathway of D-myo-inositol (1,4,5)-trisphosphate metabolism ,
superpathway of fermentation (Chlamydomonas reinhardtii) ,
superpathway of glycolysis and Entner-Doudoroff ,
superpathway of hydrolyzable tannin biosynthesis ,
superpathway of inositol phosphate compounds ,
superpathway of leucine, valine, and isoleucine biosynthesis ,
superpathway of linalool biosynthesis ,
superpathway of lysine degradation ,
superpathway of NAD biosynthesis in eukaryotes ,
superpathway of purine nucleotide salvage ,
superpathway of rosmarinic acid biosynthesis ,
superpathway of scopolin and esculin biosynthesis ,
superpathway of serine and glycine biosynthesis I ,
superpathway of sialic acids and CMP-sialic acids biosynthesis ,
superpathway of tetrahydroxyxanthone biosynthesis ,
superpathway phosphatidate biosynthesis (yeast) ,
superpathway polymethylated quercetin/quercetagetin glucoside biosynthesis (Chrysosplenium) ,
syringetin biosynthesis ,
t-anethole biosynthesis ,
taxadiene biosynthesis (engineered) ,
taxiphyllin bioactivation ,
taxiphyllin biosynthesis ,
terminal O-glycans residues modification ,
terminal olefins biosynthesis I ,
terminal olefins biosynthesis II ,
ternatin C3 biosynthesis ,
ternatin C5 biosynthesis ,
tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate ,
tetrahydroxyxanthone biosynthesis (from 3-hydroxybenzoate) ,
tetrahydroxyxanthone biosynthesis (from benzoate) ,
thiamin triphosphate metabolism ,
thioredoxin pathway ,
thiosulfate disproportionation III (rhodanese) ,
threonine biosynthesis ,
threonine biosynthesis from homoserine ,
trichloroethylene degradation ,
trigonelline biosynthesis ,
tRNA charging ,
tRNA methylation (yeast) ,
tRNA splicing ,
tuberonate glucoside biosynthesis ,
tyrosine biosynthesis I ,
tyrosine biosynthesis III ,
ubiquinol-10 biosynthesis (eukaryotic) ,
UDP-D-galacturonate biosynthesis II (from D-galacturonate) ,
umbelliferone biosynthesis ,
urea cycle ,
urea degradation II ,
ursolate biosynthesis ,
valencene and 7-epi-α-selinene biosynthesis ,
valine biosynthesis ,
vernolate biosynthesis ,
vestitol and sativan biosynthesis ,
vicianin bioactivation ,
violdelphin biosynthesis ,
vitexin and derivatives biosynthesis ,
volatile cinnamoic ester biosynthesis ,
volatile esters biosynthesis (during fruit ripening) ,
wax esters biosynthesis II ,
wogonin metabolism ,
wound-induced proteolysis I ,
wybutosine biosynthesis ,
xanthine and xanthosine salvage ,
xylan biosynthesis ,
zealexin biosynthesis


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Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Sun Nov 23, 2014, BIOCYC13A.