Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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MetaCyc Organism: Staphylococcus aureus

Synonyms: Streptococcus aureus, Staphylococus aureus, Staphylococcus pyogenes aureus, Staphlococcus pyogenes citreus, Staphilococcus aureus, NCTC 8532, NCCB 72047, NCAIM B.01065, NBRC 100910, Micrococcus pyogenes, Micrococcus aureus, JCM 20624, HAMBI 66, DSM 20231, CIP 65.8, CCUG 1800, CCM 885, ATCC 12600-U, ATCC 12600

Rank: species

Taxonomic lineage: cellular organisms , Bacteria , Firmicutes , Bacilli , Bacillales , Staphylococcaceae , Staphylococcus

Direct sub-taxa of Staphylococcus aureus: Staphylococcus aureus aureus , Staphylococcus aureus, Staphylococcus aureus, Staphylococcus aureus, Staphylococcus aureus, Staphylococcus aureus, Staphylococcus aureus, Staphylococcus aureus, Staphylococcus aureus, Staphylococcus aureus, Staphylococcus aureus, Staphylococcus aureus, Staphylococcus aureus, Staphylococcus aureus, Staphylococcus aureus, Staphylococcus aureus, Staphylococcus aureus, Staphylococcus aureus, Staphylococcus aureus, Staphylococcus aureus, (+ 4314 more...)

Unification Links: NCBI-Taxonomy:1280


Pathways present in Staphylococcus aureus or one of its sub-taxa (19).
These pathways were observed experimentally in this taxon or one of its sub-taxa:
arsenate detoxification II (glutaredoxin) ,
CDP-diacylglycerol biosynthesis III ,
heptaprenyl diphosphate biosynthesis ,
lactose and galactose degradation I ,
linezolid resistance ,
menaquinol-7 biosynthesis ,
menaquinol-8 biosynthesis ,
molybdenum cofactor biosynthesis ,
octaprenyl diphosphate biosynthesis ,
peptidoglycan biosynthesis II (staphylococci) ,
peptidoglycan cross-bridge biosynthesis I (S. aureus) ,
phenylmercury acetate degradation ,
staphyloxanthin biosynthesis ,
superpathway of menaquinol-7 biosynthesis ,
superpathway of menaquinol-8 biosynthesis I ,
thiamin diphosphate biosynthesis III (Staphylococcus) ,
UDP-N-acetyl-α-D-mannosaminouronate biosynthesis ,
UDP-N-acetyl-β-L-fucosamine biosynthesis ,
UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)

Additional pathways which may be present in Staphylococcus aureus and all its sub-taxa (1126)
These pathways were inferred using their expected taxonomic range:
1,2,4,5-tetrachlorobenzene degradation ,
1,2-dichlorobenzene degradation ,
1,2-dichloroethane degradation ,
1,2-propanediol biosynthesis from lactate (engineered) ,
(1,3)-β-D-xylan degradation ,
1,3-dichlorobenzene degradation ,
1,3-propanediol biosynthesis (engineered) ,
(1,4)-β-xylan degradation ,
1,4-dihydroxy-2-naphthoate biosynthesis I ,
1,4-dihydroxy-6-naphthoate biosynthesis I ,
1,4-dihydroxy-6-naphthoate biosynthesis II ,
1,5-anhydrofructose degradation ,
1,8-cineole degradation ,
2,2'-dihydroxybiphenyl degradation ,
2,3-dihydroxybenzoate biosynthesis ,
2,3-dihydroxypropane-1-sulfonate degradation ,
2,4,5-trichlorophenoxyacetate degradation ,
2,4,6-trichlorophenol degradation ,
2,4-dichlorophenoxyacetate degradation ,
2,4-dichlorotoluene degradation ,
2,4-dinitrotoluene degradation ,
2,5-dichlorotoluene degradation ,
2,6-dinitrotoluene degradation ,
2-amino-3-carboxymuconate semialdehyde degradation to 2-oxopentenoate ,
2-aminoethylphosphonate degradation I ,
2-aminoethylphosphonate degradation II ,
2-aminoethylphosphonate degradation III ,
2-aminophenol degradation ,
2-chloroacrylate degradation I ,
2-chloroacrylate degradation II ,
2-chlorobenzoate degradation ,
2'-deoxy-α-D-ribose 1-phosphate degradation ,
[2Fe-2S] iron-sulfur cluster biosynthesis ,
2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis ,
2-hydroxybiphenyl degradation ,
2-hydroxyphenazine biosynthesis ,
2-isopropylphenol degradation ,
2-keto-L-gulonate biosynthesis ,
2-methylcitrate cycle I ,
2-methylcitrate cycle II ,
2-nitrobenzoate degradation I ,
2-nitrobenzoate degradation II ,
2-nitrophenol degradation ,
2-nitrotoluene degradation ,
2-O-α-mannosyl-D-glycerate degradation ,
2-oxobutanoate degradation I ,
2-oxoglutarate decarboxylation to succinyl-CoA ,
2-oxoisovalerate decarboxylation to isobutanoyl-CoA ,
2-propylphenol degradation ,
3,3'-dithiodipropionate degradation ,
3,3'-thiodipropionate degradation ,
3,4,6-trichlorocatechol degradation ,
3,4-dichlorobenzoate degradation ,
3,4-dichlorotoluene degradation ,
3,5,6-trichloro-2-pyridinol degradation ,
3,5-dichlorocatechol degradation ,
3-chlorobenzoate degradation III (via gentisate) ,
3-chlorobenzoate degradation II (via protocatechuate) ,
3-chlorobenzoate degradation I (via chlorocatechol) ,
3-chlorocatechol degradation III (meta pathway) ,
3-chlorocatechol degradation II (ortho) ,
3-chlorocatechol degradation I (ortho) ,
3-chlorotoluene degradation I ,
3-chlorotoluene degradation II ,
3-dehydroquinate biosynthesis I ,
3-methylarginine biosynthesis ,
3-methylbutanol biosynthesis ,
3-methylthiopropanoate biosynthesis ,
3-phenylpropionate degradation ,
4,4'-diapolycopenedioate biosynthesis ,
4,5-dichlorocatechol degradation ,
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis ,
4-amino-3-hydroxybenzoate degradation ,
4-aminobenzoate biosynthesis ,
4-aminobutyrate degradation ,
4-aminobutyrate degradation II ,
4-aminobutyrate degradation III ,
4-aminobutyrate degradation V ,
4-chloro-2-methylphenoxyacetate degradation ,
4-chlorobenzoate degradation ,
4-chlorocatechol degradation ,
4-chloronitrobenzene degradation ,
4-coumarate degradation (anaerobic) ,
4-ethylphenol degradation (anaerobic) ,
4-hydroxy-2(1H)-quinolone biosynthesis ,
4-hydroxyacetophenone degradation ,
4-hydroxybenzoate biosynthesis II (microbes) ,
4-hydroxymandelate degradation ,
4-hydroxyphenylpyruvate biosynthesis ,
4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) ,
4-methylcatechol degradation (ortho cleavage) ,
4-nitrophenol degradation II ,
4-nitrotoluene degradation II ,
(4R)-carveol and (4R)-dihydrocarveol degradation ,
(4S)-carveol and (4S)-dihydrocarveol degradation ,
4-sulfocatechol degradation ,
5,5'-dehydrodivanillate degradation ,
5,6-dimethylbenzimidazole biosynthesis ,
5-aminoimidazole ribonucleotide biosynthesis I ,
5-aminoimidazole ribonucleotide biosynthesis II ,
5-(carboxymethoxy)uridine biosynthesis ,
5-chloro-3-methyl-catechol degradation ,
5-dehydro-4-deoxy-D-glucuronate degradation ,
5-hydroxymethylfurfural degradation ,
5-nitroanthranilate degradation ,
(5R)-carbapenem carboxylate biosynthesis ,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I ,
8-amino-7-oxononanoate biosynthesis I ,
8-amino-7-oxononanoate biosynthesis II ,
8-amino-7-oxononanoate biosynthesis III ,
acetan biosynthesis ,
acetate conversion to acetyl-CoA ,
acetate formation from acetyl-CoA I ,
acetate formation from acetyl-CoA II ,
acetoacetate degradation (to acetyl CoA) ,
acetoin biosynthesis III ,
acetoin degradation ,
acetone degradation II (to acetoacetate) ,
acetyl-CoA fermentation to butyrate II ,
acetylene degradation ,
acrylate degradation ,
acyl-ACP thioesterase pathway ,
acyl carrier protein metabolism I ,
acyl-CoA hydrolysis ,
adenine and adenosine salvage I ,
adenine and adenosine salvage II ,
adenine and adenosine salvage II ,
adenine and adenosine salvage III ,
adenine and adenosine salvage IV ,
adenine and adenosine salvage V ,
adenosine 5'-phosphoramidate biosynthesis ,
adenosine deoxyribonucleotides de novo biosynthesis ,
adenosine deoxyribonucleotides de novo biosynthesis II ,
adenosine nucleotides degradation II ,
adenosine nucleotides degradation III ,
adenosine ribonucleotides de novo biosynthesis ,
adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I ,
adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II ,
adenosylcobalamin biosynthesis I (early cobalt insertion) ,
adenosylcobalamin biosynthesis II (late cobalt incorporation) ,
adenosylcobalamin salvage from cobalamin ,
adenosylcobalamin salvage from cobinamide II ,
aerobic respiration I (cytochrome c) ,
aerobic respiration III (alternative oxidase pathway) ,
agarose degradation ,
alanine biosynthesis I ,
alanine biosynthesis II ,
alanine biosynthesis III ,
alanine degradation I ,
alanine degradation II (to D-lactate) ,
alanine degradation IV ,
aldoxime degradation ,
alginate biosynthesis I ,
alginate biosynthesis II ,
alginate degradation ,
allantoin degradation IV (anaerobic) ,
allantoin degradation to glyoxylate I ,
allantoin degradation to glyoxylate III ,
allantoin degradation to ureidoglycolate II (ammonia producing) ,
allantoin degradation to ureidoglycolate I (urea producing) ,
all-trans-decaprenyl diphosphate biosynthesis ,
all trans undecaprenyl diphosphate biosynthesis ,
aminopropanol phosphate biosynthesis I ,
aminopropanol phosphate biosynthesis II ,
aminopropylcadaverine biosynthesis ,
ammonia assimilation cycle III ,
ammonia oxidation I (aerobic) ,
androstenedione degradation ,
anhydromuropeptides recycling ,
aniline degradation ,
anthranilate degradation I (aerobic) ,
anthranilate degradation IV (aerobic) ,
arginine biosynthesis II (acetyl cycle) ,
arginine biosynthesis III (via N-acetyl-L-citrulline) ,
arginine biosynthesis IV (archaebacteria) ,
arginine biosynthesis I (via L-ornithine) ,
arginine degradation I (arginase pathway) ,
arginine degradation III (arginine decarboxylase/agmatinase pathway) ,
arginine degradation V (arginine deiminase pathway) ,
arginine dependent acid resistance ,
arginine, ornithine and proline interconversion ,
aromatic biogenic amine degradation (bacteria) ,
arsenate detoxification III (mycothiol) ,
arsenate reduction (respiratory) ,
arsenite oxidation II (respiratory) ,
arsenite oxidation I (respiratory) ,
arsonoacetate degradation ,
asparagine biosynthesis I ,
asparagine biosynthesis II ,
asparagine biosynthesis III (tRNA-dependent) ,
asparagine degradation I ,
aspartate biosynthesis ,
aspartate degradation I ,
aspartate superpathway ,
astaxanthin biosynthesis ,
aurachin A, B, C and D biosynthesis ,
aurachin RE biosynthesis ,
autoinducer AI-1 biosynthesis ,
autoinducer AI-2 biosynthesis I ,
bacillibactin biosynthesis ,
bacillithiol biosynthesis ,
base-degraded thiamin salvage ,
benzene degradation ,
benzoate degradation II (aerobic and anaerobic) ,
benzoate fermentation (to acetate and cyclohexane carboxylate) ,
benzoyl-CoA biosynthesis ,
benzoyl-CoA degradation I (aerobic) ,
benzoyl-CoA degradation II (anaerobic) ,
benzoyl-CoA degradation III (anaerobic) ,
β-alanine biosynthesis II ,
β-alanine biosynthesis III ,
β-carotene biosynthesis ,
β-carotene biosynthesis (engineered) ,
β-D-glucuronide and D-glucuronate degradation ,
biotin biosynthesis from 8-amino-7-oxononanoate I ,
biotin biosynthesis from 8-amino-7-oxononanoate II ,
biotin biosynthesis I ,
biotin biosynthesis II ,
biotin-carboxyl carrier protein assembly ,
biphenyl degradation ,
bisucaberin biosynthesis ,
butanol and isobutanol biosynthesis (engineered) ,
butirosin biosynthesis ,
caffeine degradation III (bacteria, via demethylation) ,
caffeine degradation IV (bacteria, via demethylation and oxidation) ,
caffeine degradation V (bacteria, via trimethylurate) ,
Calvin-Benson-Bassham cycle ,
carbazole degradation ,
carbon disulfide oxidation I (anaerobic) ,
carbon disulfide oxidation II (aerobic) ,
carbon tetrachloride degradation I ,
carbon tetrachloride degradation II ,
cardiolipin and phosphatidylethanolamine biosynthesis (Xanthomonas) ,
cardiolipin biosynthesis I ,
CDP-2-glycerol biosynthesis ,
CDP-D-arabitol biosynthesis ,
CDP-diacylglycerol biosynthesis I ,
CDP-D-mannitol biosynthesis ,
cellulose and hemicellulose degradation (cellulolosome) ,
cellulose biosynthesis ,
cellulose degradation I (cellulosome) ,
cephamycin C biosynthesis ,
chitin degradation II ,
chitobiose degradation ,
chlorate reduction ,
chlorinated phenols degradation ,
chlorobenzene degradation ,
chlorogenic acid degradation ,
chlorophyllide a biosynthesis I (aerobic, light-dependent) ,
chlorophyllide a biosynthesis II (anaerobic) ,
chlorophyllide a biosynthesis III (aerobic, light independent) ,
chlorosalicylate degradation ,
cholate degradation (bacteria, anaerobic) ,
cholesterol degradation to androstenedione I (cholesterol oxidase) ,
cholesterol degradation to androstenedione II (cholesterol dehydrogenase) ,
choline degradation III ,
chondroitin sulfate and dermatan sulfate degradation I (bacterial) ,
chorismate biosynthesis from 3-dehydroquinate ,
chorismate biosynthesis I ,
cinnamate and 3-hydroxycinnamate degradation to 2-oxopent-4-enoate ,
cis-calamenene related sesquiterpenoids biosynthesis ,
cis-dodecenoyl biosynthesis ,
cis-genanyl-CoA degradation ,
cis-vaccenate biosynthesis ,
citrate degradation ,
citrate lyase activation ,
citronellol degradation ,
citrulline degradation ,
CMP-2-keto-3-deoxy-D-glycero-D-galacto-nononate biosynthesis ,
CMP-legionaminate biosynthesis I ,
CMP-legionaminate biosynthesis II ,
CMP-N-acetyl-7-O-acetylneuraminate biosynthesis ,
CMP-N-acetylneuraminate biosynthesis II (bacteria) ,
CMP phosphorylation ,
CMP-pseudaminate biosynthesis ,
cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) ,
cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation) ,
coenzyme A biosynthesis I ,
coniferin metabolism ,
costunolide biosynthesis ,
coumarins biosynthesis (engineered) ,
creatinine degradation I ,
creatinine degradation II ,
creatinine degradation III ,
crotonate fermentation (to acetate and cyclohexane carboxylate) ,
curcumin degradation ,
cyanate degradation ,
cyanide degradation ,
cyanophycin metabolism ,
cyclopropane fatty acid (CFA) biosynthesis ,
cysteine biosynthesis/homocysteine degradation ,
cysteine biosynthesis I ,
cysteine biosynthesis III (mammalian) ,
cytidylyl molybdenum cofactor biosynthesis ,
daidzin and daidzein degradation ,
D-allose degradation ,
dammara-20,24-diene biosynthesis ,
D-arabinose degradation I ,
D-arabinose degradation II ,
D-arginine degradation ,
deacetylcephalosporin C biosynthesis ,
dehydrodiconiferyl alcohol degradation ,
demethylmenaquinol-6 biosynthesis I ,
demethylmenaquinol-6 biosynthesis II ,
demethylmenaquinol-8 biosynthesis I ,
demethylmenaquinol-8 biosynthesis II ,
demethylmenaquinol-8 biosynthesis III ,
demethylmenaquinol-9 biosynthesis ,
D-fructuronate degradation ,
D-galactarate degradation I ,
D-galactarate degradation II ,
D-galactonate degradation ,
D-galacturonate degradation I ,
D-galacturonate degradation II ,
D-glucarate degradation I ,
D-glucarate degradation II ,
D-gluconate degradation ,
D-glucosaminate degradation ,
D-glucuronate degradation II ,
diacylglyceryl-N,N,N-trimethylhomoserine biosynthesis ,
diethylphosphate degradation ,
dimethyl sulfide degradation III (oxidation) ,
dimethyl sulfide degradation II (oxidation) ,
dimethyl sulfone degradation ,
dimethylsulfoniopropionate degradation I (cleavage) ,
dimethylsulfoniopropionate degradation II (cleavage) ,
dimethylsulfoniopropionate degradation III (demethylation) ,
dimethyl sulfoxide degradation ,
di-myo-inositol phosphate biosynthesis ,
diphenylamine degradation ,
di-trans,poly-cis-undecaprenyl phosphate biosynthesis ,
D-mannose degradation ,
D-serine degradation ,
D-sorbitol degradation I ,
D-sorbitol degradation II ,
dTDP-3-acetamido-3,6-dideoxy-α-D-galactose biosynthesis ,
dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis ,
dTDP-6-deoxy-α-D-allose biosynthesis ,
dTDP-D-desosamine biosynthesis ,
dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis ,
dTDP-L-megosamine biosynthesis ,
dTDP-L-mycarose biosynthesis ,
dTDP-L-olivose biosynthesis ,
dTDP-L-rhamnose biosynthesis I ,
dTDP-N-acetylviosamine biosynthesis ,
ectoine biosynthesis ,
eicosapentaenoate biosynthesis IV (bacteria) ,
Entner-Doudoroff pathway I ,
erythromycin A biosynthesis ,
erythromycin D biosynthesis ,
ethanedisulfonate degradation ,
ethanol degradation I ,
ethanol degradation II ,
ethylene biosynthesis III (microbes) ,
ethylene biosynthesis II (microbes) ,
ethylene biosynthesis V (engineered) ,
ethylmalonyl pathway ,
eumelanin biosynthesis ,
fatty acid activation ,
fatty acid β-oxidation I ,
fatty acid β-oxidation III (unsaturated, odd number) ,
fatty acid biosynthesis initiation I ,
fatty acid biosynthesis initiation II ,
fatty acid biosynthesis initiation III ,
fatty acid elongation -- saturated ,
fatty acid salvage ,
Fe(II) oxidation ,
ferulate degradation ,
flavin biosynthesis I (bacteria and plants) ,
flaviolin dimer and mompain biosynthesis ,
fluoroacetate and fluorothreonine biosynthesis ,
fluoroacetate degradation ,
folate polyglutamylation ,
folate transformations I ,
formaldehyde assimilation II (RuMP Cycle) ,
formaldehyde assimilation I (serine pathway) ,
formaldehyde oxidation I ,
formaldehyde oxidation II (glutathione-dependent) ,
formaldehyde oxidation V (H4MPT pathway) ,
formate oxidation to CO2 ,
formate to dimethyl sulfoxide electron transfer ,
formate to trimethylamine N-oxide electron transfer ,
fosfomycin biosynthesis ,
FR-900098 and FR-33289 antibiotics biosynthesis ,
fructan biosynthesis ,
fructose degradation ,
fructoselysine and psicoselysine degradation ,
fucose degradation ,
furfural degradation ,
galactose degradation I (Leloir pathway) ,
galena oxidation ,
gallate biosynthesis ,
gallate degradation I ,
gallate degradation II ,
gallate degradation III (anaerobic) ,
GDP-6-deoxy-D-talose biosynthesis ,
GDP-D-glycero-α-D-manno-heptose biosynthesis ,
GDP-D-perosamine biosynthesis ,
GDP-D-rhamnose biosynthesis ,
GDP-glucose biosynthesis ,
GDP-L-fucose biosynthesis I (from GDP-D-mannose) ,
GDP-mannose biosynthesis ,
gellan degradation ,
gentisate degradation I ,
gentisate degradation II ,
geranyl diphosphate biosynthesis ,
geranylgeranyl diphosphate biosynthesis ,
gibberellin inactivation I (2β-hydroxylation) ,
ginsenoside degradation II ,
gluconeogenesis I ,
glucose and glucose-1-phosphate degradation ,
glucose degradation (oxidative) ,
glucosylglycerate biosynthesis I ,
glucosylglycerate biosynthesis II ,
glucuronoarabinoxylan degradation ,
glutamate and glutamine biosynthesis ,
glutamate biosynthesis I ,
glutamate biosynthesis II ,
glutamate biosynthesis III ,
glutamate degradation I ,
glutamate degradation II ,
glutamate degradation VIII (to propionate) ,
glutamate degradation VII (to butanoate) ,
glutamate degradation VI (to pyruvate) ,
glutamate degradation V (via hydroxyglutarate) ,
glutamate degradation X ,
glutamate dependent acid resistance ,
glutamine biosynthesis I ,
glutamine degradation I ,
glutamine degradation II ,
glutaryl-CoA degradation ,
glutathione amide metabolism ,
glutathione biosynthesis ,
glutathione redox reactions I ,
glutathione redox reactions II ,
glutathionylspermidine biosynthesis ,
glycerol and glycerophosphodiester degradation ,
glycerol degradation I ,
glycerol degradation II ,
glycerol degradation III ,
glycerol degradation to butanol ,
glycerol degradation V ,
glycerophosphodiester degradation ,
glycine betaine biosynthesis II (Gram-positive bacteria) ,
glycine betaine biosynthesis IV (from glycine) ,
glycine betaine degradation I ,
glycine biosynthesis I ,
glycine biosynthesis III ,
glycine cleavage ,
glycocholate metabolism (bacteria) ,
glycogen biosynthesis I (from ADP-D-Glucose) ,
glycogen degradation I ,
glycogen degradation III ,
glycogenolysis II ,
glycolate and glyoxylate degradation I ,
glycolate and glyoxylate degradation II ,
glycolate and glyoxylate degradation III ,
glycolate degradation II ,
glycolysis I (from glucose 6-phosphate) ,
glycolysis II (from fructose 6-phosphate) ,
glycolysis III (from glucose) ,
glyoxylate cycle ,
gramicidin S biosynthesis ,
guaiacylglycerol-β-guaiacyl ether degradation ,
guanine and guanosine salvage ,
guanine and guanosine salvage II ,
guanine and guanosine salvage III ,
guanosine deoxyribonucleotides de novo biosynthesis I ,
guanosine deoxyribonucleotides de novo biosynthesis II ,
guanosine nucleotides degradation III ,
guanosine ribonucleotides de novo biosynthesis ,
guanylyl molybdenum cofactor biosynthesis ,
heme biosynthesis I (aerobic) ,
heme biosynthesis II (anaerobic) ,
heme biosynthesis III (from siroheme) ,
heme d1 biosynthesis ,
hentriaconta-3,6,9,12,15,19,22,25,28-nonaene biosynthesis ,
heptadecane biosynthesis ,
heterolactic fermentation ,
hexaprenyl diphosphate biosynthesis ,
hexitol fermentation to lactate, formate, ethanol and acetate ,
histamine biosynthesis ,
histidine biosynthesis ,
histidine degradation I ,
homocysteine biosynthesis ,
homolactic fermentation ,
homoserine and methionine biosynthesis ,
homoserine biosynthesis ,
homospermidine biosynthesis ,
homotaurine degradation ,
hopanoid biosynthesis (bacteria) ,
hydrogen oxidation I (aerobic) ,
hydrogen oxidation II (aerobic, NAD) ,
hydrogen oxidation III (anaerobic, NADP) ,
hydrogen production I ,
hydrogen production II ,
hydrogen production III ,
hydrogen production V ,
hydrogen production VI ,
hydrogen sulfide biosynthesis I ,
hydroxymethylpyrimidine salvage ,
hypotaurine degradation ,
indigo biosynthesis ,
indole-3-acetate degradation VIII (bacterial) ,
inosine-5'-phosphate biosynthesis I ,
intra-aerobic nitrite reduction ,
ι-carrageenan degradation ,
isethionate degradation ,
isoleucine biosynthesis I ,
isoleucine biosynthesis I (from threonine) ,
isoleucine biosynthesis IV ,
isoleucine biosynthesis V ,
isoleucine degradation I ,
isopenicillin N biosynthesis ,
isoprene biosynthesis II (engineered) ,
isopropanol biosynthesis ,
isopropylamine degradation ,
itaconate degradation ,
kanosamine biosynthesis I ,
kanosamine biosynthesis II ,
κ-carrageenan degradation ,
ketogluconate metabolism ,
kojibiose degradation ,
L-1,2-propanediol degradation ,
lactate biosynthesis (archaea) ,
lactose degradation III ,
L-alanine fermentation to propionate and acetate ,
λ-carrageenan degradation ,
laminaribiose degradation ,
L-arabinan degradation ,
L-arabinose degradation I ,
L-arabinose degradation III ,
L-ascorbate biosynthesis III ,
L-ascorbate biosynthesis VI (engineered pathway) ,
L-ascorbate degradation I (bacterial, anaerobic) ,
L-ascorbate degradation II (bacterial, aerobic) ,
L-cysteine biosynthesis V ,
L-cysteine degradation II ,
L-dopachrome biosynthesis ,
leucine biosynthesis ,
leucine degradation I ,
leucine degradation II ,
L-galactonate degradation ,
L-glucose degradation ,
L-glutamine biosynthesis II (tRNA-dependent) ,
L-homophenylalanine biosynthesis ,
L-idonate degradation ,
limonene degradation I (D-limonene) ,
limonene degradation III (to perillate) ,
limonene degradation II (L-limonene) ,
lincomycin biosynthesis ,
linuron degradation ,
lipid IVA biosynthesis ,
lipoate biosynthesis and incorporation I ,
lipoate biosynthesis and incorporation II ,
lipoate biosynthesis and incorporation III (Bacillus) ,
lipoate salvage I ,
lipoate salvage II ,
L-lactaldehyde degradation (aerobic) ,
L-lactaldehyde degradation (anaerobic) ,
L-lyxonate degradation ,
L-lyxose degradation ,
long chain fatty acid ester synthesis for microdiesel production ,
L-rhamnose degradation I ,
L-rhamnose degradation II ,
L-rhamnose degradation III ,
L-serine degradation ,
L-sorbose degradation ,
lysine biosynthesis I ,
lysine biosynthesis II ,
lysine biosynthesis III ,
lysine biosynthesis V ,
lysine degradation I ,
lysine degradation IV ,
lysine degradation V ,
lysine degradation VIII ,
lysine fermentation to acetate and butyrate ,
malonate decarboxylase activation ,
malonate degradation I (biotin-independent) ,
malonate degradation II (biotin-dependent) ,
maltose degradation ,
manganese oxidation I ,
manganese oxidation II ,
mannan degradation ,
mannitol degradation I ,
mannojirimycin biosynthesis ,
mannosylglucosylglycerate biosynthesis I ,
mannosylglucosylglycerate biosynthesis II ,
mannosylglycerate biosynthesis I ,
mannosylglycerate biosynthesis II ,
megalomicin A biosynthesis ,
melibiose degradation ,
menaquinol-6 biosynthesis ,
menaquinol-9 biosynthesis ,
meso-butanediol biosynthesis I ,
meso-butanediol biosynthesis II ,
meta cleavage pathway of aromatic compounds ,
methanesulfonate degradation ,
methanol oxidation to formaldehyde II ,
methanol oxidation to formaldehyde III ,
methionine biosynthesis I ,
methionine biosynthesis III ,
methionine degradation II ,
methionine degradation I (to homocysteine) ,
methionine salvage cycle I (bacteria and plants) ,
methylamine degradation II ,
methylerythritol phosphate pathway I ,
methylgallate degradation ,
methylglyoxal degradation I ,
methylglyoxal degradation II ,
methylglyoxal degradation III ,
methylglyoxal degradation IV ,
methylglyoxal degradation VII ,
methylhalides biosynthesis (plants) ,
methyl ketone biosynthesis ,
methylphosphonate degradation I ,
methylphosphonate degradation II ,
methylsalicylate degradation ,
methylthiolincosamide biosynthesis ,
methylthiopropionate degradation I (cleavage) ,
methylthiopropionate degradation II (demethylation) ,
mevalonate degradation ,
mevalonate pathway I ,
mithramycin biosynthesis ,
mixed acid fermentation ,
m-xylene degradation to m-toluate ,
mycocyclosin biosynthesis ,
myo-, chiro- and scillo-inositol degradation ,
myo-inositol biosynthesis ,
myo-inositol degradation I ,
myo-inositol degradation II ,
N10-formyl-tetrahydrofolate biosynthesis ,
N-acetylglucosamine degradation I ,
N-acetylglucosamine degradation II ,
N-acetylglutaminylglutamine amide biosynthesis ,
N-acetylneuraminate and N-acetylmannosamine degradation ,
NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde ,
NAD biosynthesis I (from aspartate) ,
NAD biosynthesis II (from tryptophan) ,
NAD biosynthesis III ,
NADH repair ,
NADH to cytochrome bd oxidase electron transfer I ,
NADH to cytochrome bo oxidase electron transfer I ,
NADH to dimethyl sulfoxide electron transfer ,
NADH to fumarate electron transfer ,
NADH to trimethylamine N-oxide electron transfer ,
NAD phosphorylation and dephosphorylation I ,
NAD salvage pathway I ,
NAD salvage pathway II ,
NAD salvage pathway III ,
naphthalene degradation (aerobic) ,
naphthalene degradation to acetyl-CoA ,
neomycin biosynthesis ,
neurosporene biosynthesis ,
nicotinate degradation II ,
nicotinate degradation III ,
nicotine degradation II ,
nicotine degradation V ,
nitrate reduction I (denitrification) ,
nitrate reduction III (dissimilatory) ,
nitrate reduction IV (dissimilatory) ,
nitrate reduction V (assimilatory) ,
nitrate reduction VII (denitrification) ,
nitrate reduction VIII (dissimilatory) ,
nitrifier denitrification ,
nitrobenzene degradation I ,
nitrobenzene degradation II ,
nitrogen fixation ,
nonaprenyl diphosphate biosynthesis I ,
nostoxanthin biosynthesis ,
nylon-6 oligomer degradation ,
octane oxidation ,
oleandomycin activation/inactivation ,
oleandomycin biosynthesis ,
oleate β-oxidation ,
ornithine biosynthesis ,
ornithine degradation II (Stickland reaction) ,
ornithine degradation I (proline biosynthesis) ,
ornithine lipid biosynthesis ,
oxalate degradation I ,
oxalate degradation II ,
oxalate degradation III ,
oxalate degradation IV ,
oxalate degradation V ,
oxidized GTP and dGTP detoxification ,
palmitate biosynthesis II (bacteria and plants) ,
palmitoleate biosynthesis I ,
palmitoleate biosynthesis II ,
pantothenate and coenzyme A biosynthesis I ,
paraoxon degradation ,
parathion degradation ,
paromamine biosynthesis II ,
paromomycin biosynthesis ,
pectin degradation I ,
pectin degradation II ,
pectin degradation III ,
pentachlorophenol degradation ,
pentose phosphate pathway ,
pentose phosphate pathway (non-oxidative branch) ,
pentose phosphate pathway (oxidative branch) I ,
peptidoglycan biosynthesis I (meso-diaminopimelate containing) ,
peptidoglycan biosynthesis V (β-lactam resistance) ,
perchlorate reduction ,
petrobactin biosynthesis ,
phenylacetate degradation I (aerobic) ,
phenylacetate degradation II (anaerobic) ,
phenylalanine biosynthesis I ,
phenylalanine biosynthesis II ,
phenylalanine degradation I (aerobic) ,
phenylethanol biosynthesis ,
phenylethylamine degradation I ,
phenylethylamine degradation II ,
phosphate acquisition ,
phosphatidylcholine biosynthesis I ,
phosphatidylcholine biosynthesis V ,
phosphatidylcholine biosynthesis VI ,
phosphatidylcholine biosynthesis VII ,
phosphatidylcholine resynthesis via glycerophosphocholine ,
phosphatidylethanolamine biosynthesis I ,
phosphatidylglycerol biosynthesis II (non-plastidic) ,
phosphatidylglycerol biosynthesis I (plastidic) ,
phospholipases ,
phospholipid biosynthesis I ,
phosphonoacetate degradation ,
phosphopantothenate biosynthesis I ,
photosynthesis light reactions ,
photosynthetic 3-hydroxybutyrate biosynthesis (engineered) ,
phthalate degradation ,
plumbagin biosynthesis ,
polyhydroxybutyrate biosynthesis ,
polyhydroxydecanoate biosynthesis ,
polyisoprenoid biosynthesis (E. coli) ,
polyvinyl alcohol degradation ,
porphyran degradation ,
ppGpp biosynthesis ,
preQ0 biosynthesis ,
prodigiosin biosynthesis ,
proline biosynthesis I ,
proline degradation ,
proline to cytochrome bo oxidase electron transfer ,
propionyl CoA degradation ,
propylene degradation ,
protocatechuate degradation III (para-cleavage pathway) ,
protocatechuate degradation II (ortho-cleavage pathway) ,
PRPP biosynthesis I ,
PRPP biosynthesis II ,
pseudouridine degradation ,
pulcherrimin biosynthesis ,
purine deoxyribonucleosides degradation I ,
purine deoxyribonucleosides salvage ,
purine nucleobases degradation I (anaerobic) ,
purine nucleobases degradation II (anaerobic) ,
purine nucleotides degradation II (aerobic) ,
purine ribonucleosides degradation ,
putrescine biosynthesis I ,
putrescine biosynthesis II ,
putrescine biosynthesis III ,
putrescine degradation I ,
putrescine degradation II ,
putrescine degradation V ,
p-xylene degradation to p-toluate ,
pyochelin biosynthesis ,
pyocyanin biosynthesis ,
pyridoxal 5'-phosphate biosynthesis I ,
pyridoxal 5'-phosphate biosynthesis II ,
pyridoxal 5'-phosphate salvage I ,
pyrimidine deoxyribonucleosides degradation ,
pyrimidine deoxyribonucleosides salvage ,
pyrimidine deoxyribonucleotide phosphorylation ,
pyrimidine deoxyribonucleotides biosynthesis from CTP ,
pyrimidine deoxyribonucleotides de novo biosynthesis I ,
pyrimidine deoxyribonucleotides de novo biosynthesis II ,
pyrimidine deoxyribonucleotides de novo biosynthesis III ,
pyrimidine deoxyribonucleotides dephosphorylation ,
pyrimidine nucleobases salvage I ,
pyrimidine nucleobases salvage II ,
pyrimidine ribonucleosides degradation ,
pyrimidine ribonucleosides salvage I ,
pyrimidine ribonucleosides salvage II ,
pyrimidine ribonucleosides salvage III ,
pyrrolnitrin biosynthesis ,
pyrroloquinoline quinone biosynthesis ,
pyruvate decarboxylation to acetyl CoA ,
pyruvate fermentation to acetate and lactate I ,
pyruvate fermentation to acetate and lactate II ,
pyruvate fermentation to acetate I ,
pyruvate fermentation to acetate II ,
pyruvate fermentation to acetate IV ,
pyruvate fermentation to acetone ,
pyruvate fermentation to butanoate ,
pyruvate fermentation to butanol II ,
pyruvate fermentation to ethanol I ,
pyruvate fermentation to ethanol II ,
pyruvate fermentation to ethanol III ,
pyruvate fermentation to hexanol ,
pyruvate fermentation to isobutanol (engineered) ,
pyruvate fermentation to lactate ,
pyruvate fermentation to propionate I ,
pyruvate fermentation to propionate II (acrylate pathway) ,
pyruvate oxidation pathway ,
queuosine biosynthesis ,
quinate degradation I ,
quinate degradation II ,
(R)-acetoin biosynthesis I ,
(R)-acetoin biosynthesis II ,
(R)- and (S)-3-hydroxybutyrate biosynthesis ,
(R)-cysteate degradation ,
reductive acetyl coenzyme A pathway ,
reductive monocarboxylic acid cycle ,
rhamnogalacturonan type I degradation II (bacteria) ,
rhamnolipid biosynthesis ,
rhizocticin A and B biosynthesis ,
ribose degradation ,
ribostamycin biosynthesis ,
ricinine degradation ,
(R,R)-butanediol biosynthesis ,
(R,R)-butanediol degradation ,
(S)-acetoin biosynthesis ,
S-adenosyl-L-methionine biosynthesis ,
S-adenosyl-L-methionine cycle I ,
S-adenosyl-L-methionine cycle II ,
salicylate biosynthesis I ,
salicylate biosynthesis II ,
salicylate degradation I ,
salicylate degradation II ,
salicylate degradation IV ,
sciadonate biosynthesis ,
sedoheptulose bisphosphate bypass ,
selenate reduction ,
selenocysteine biosynthesis I (bacteria) ,
selinene biosynthesis ,
serine biosynthesis ,
serine racemization ,
shikimate degradation I ,
shikimate degradation II ,
siroheme amide biosynthesis ,
siroheme biosynthesis ,
sitosterol degradation to androstenedione ,
S-methyl-5'-thioadenosine degradation I ,
S-methyl-5'-thioadenosine degradation II ,
S-methyl-5'-thioadenosine degradation III ,
S-methyl-5'-thioadenosine degradation IV ,
S-methyl-5-thio-α-D-ribose 1-phosphate degradation ,
S-methyl-5-thio-α-D-ribose 1-phosphate degradation II ,
spermidine biosynthesis I ,
spermidine biosynthesis II ,
spermidine biosynthesis III ,
spermine biosynthesis ,
spheroidene and spheroidenone biosynthesis ,
sphingomyelin metabolism ,
spirilloxanthin and 2,2'-diketo-spirilloxanthin biosynthesis ,
(S,S)-butanediol biosynthesis ,
(S,S)-butanediol degradation ,
stearate biosynthesis I (animals) ,
stearate biosynthesis II (bacteria and plants) ,
styrene degradation ,
succinate fermentation to butyrate ,
succinate to cytochrome bd oxidase electron transfer ,
succinate to cytochrome bo oxidase electron transfer ,
sucrose degradation I (sucrose phosphotransferase) ,
sulfate activation for sulfonation ,
sulfate reduction I (assimilatory) ,
sulfate reduction II (assimilatory) ,
sulfate reduction III (assimilatory) ,
sulfate reduction IV (dissimilatory) ,
sulfate reduction V (dissimilatory) ,
sulfide oxidation II (sulfide dehydrogenase) ,
sulfite oxidation II ,
sulfite oxidation III ,
sulfite oxidation I (sulfite oxidoreductase) ,
sulfoacetaldehyde degradation I ,
sulfoacetaldehyde degradation II ,
sulfoacetaldehyde degradation III ,
sulfoacetate degradation ,
sulfoglycolysis ,
sulfolactate degradation I ,
sulfolactate degradation II ,
sulfolactate degradation III ,
sulfur disproportionation I (anaerobic) ,
sulfur oxidation I (aerobic) ,
sulfur oxidation II (Fe+3-dependent) ,
sulfur oxidation IV (intracellular sulfur) ,
sulfur reduction I ,
sulfur reduction II (via polysulfide) ,
superoxide radicals degradation ,
superpathway of 2,3-butanediol biosynthesis ,
superpathway of 4-aminobutyrate degradation ,
superpathway of 5-aminoimidazole ribonucleotide biosynthesis ,
superpathway of acetate utilization and formation ,
superpathway of adenosine nucleotides de novo biosynthesis I ,
superpathway of adenosine nucleotides de novo biosynthesis II ,
superpathway of alanine biosynthesis ,
superpathway of alliin degradation ,
superpathway of arginine and ornithine degradation ,
superpathway of arginine and polyamine biosynthesis ,
superpathway of arginine, putrescine, and 4-aminobutyrate degradation ,
superpathway of aromatic compound degradation via 2-oxopent-4-enoate ,
superpathway of aromatic compound degradation via 3-oxoadipate ,
superpathway of asparagine biosynthesis ,
superpathway of aspartate and asparagine biosynthesis; interconversion of aspartate and asparagine ,
superpathway of atrazine degradation ,
superpathway of β-D-glucuronide and D-glucuronate degradation ,
superpathway of butirocin biosynthesis ,
superpathway of C1 compounds oxidation to CO2 ,
superpathway of cholesterol degradation I (cholesterol oxidase) ,
superpathway of cholesterol degradation II (cholesterol dehydrogenase) ,
superpathway of chorismate metabolism ,
superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation ,
superpathway of Clostridium acetobutylicum acidogenic fermentation ,
superpathway of Clostridium acetobutylicum solventogenic fermentation ,
superpathway of demethylmenaquinol-6 biosynthesis II ,
superpathway of demethylmenaquinol-8 biosynthesis ,
superpathway of demethylmenaquinol-9 biosynthesis ,
superpathway of D-glucarate and D-galactarate degradation ,
superpathway of dimethylsulfone degradation ,
superpathway of dimethylsulfoniopropionate degradation ,
superpathway of dTDP-glucose-derived O-antigen building blocks biosynthesis ,
superpathway of erythromycin biosynthesis ,
superpathway of erythromycin biosynthesis (without sugar biosynthesis) ,
superpathway of fatty acid biosynthesis initiation (E. coli) ,
superpathway of fatty acids biosynthesis (E. coli) ,
superpathway of fucose and rhamnose degradation ,
superpathway of GDP-mannose-derived O-antigen building blocks biosynthesis ,
superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) ,
superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) ,
superpathway of glucose and xylose degradation ,
superpathway of glycerol degradation to 1,3-propanediol ,
superpathway of glycol metabolism and degradation ,
superpathway of glycolysis and Entner-Doudoroff ,
superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass ,
superpathway of glyoxylate bypass and TCA ,
superpathway of guanosine nucleotides de novo biosynthesis I ,
superpathway of guanosine nucleotides de novo biosynthesis II ,
superpathway of heme biosynthesis from uroporphyrinogen-III ,
superpathway of hexitol degradation (bacteria) ,
superpathway of hexuronide and hexuronate degradation ,
superpathway of histidine, purine, and pyrimidine biosynthesis ,
superpathway of hydrogen production ,
superpathway of leucine, valine, and isoleucine biosynthesis ,
superpathway of lipopolysaccharide biosynthesis ,
superpathway of lysine degradation ,
superpathway of lysine, threonine and methionine biosynthesis I ,
superpathway of megalomicin A biosynthesis ,
superpathway of menaquinol-6 biosynthesis I ,
superpathway of menaquinol-8 biosynthesis II ,
superpathway of menaquinol-9 biosynthesis ,
superpathway of methionine biosynthesis (by sulfhydrylation) ,
superpathway of methionine biosynthesis (transsulfuration) ,
superpathway of methylglyoxal degradation ,
superpathway of microbial D-galacturonate and D-glucuronate degradation ,
superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation ,
superpathway of N-acetylneuraminate degradation ,
superpathway of neomycin biosynthesis ,
superpathway of nicotinate degradation ,
superpathway of ornithine degradation ,
superpathway of penicillin, cephalosporin and cephamycin biosynthesis ,
superpathway of pentose and pentitol degradation ,
superpathway of phenylalanine biosynthesis ,
superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis ,
superpathway of phenylethylamine degradation ,
superpathway of polyamine biosynthesis I ,
superpathway of polyamine biosynthesis II ,
superpathway of purine deoxyribonucleosides degradation ,
superpathway of purine nucleotides de novo biosynthesis I ,
superpathway of purine nucleotides de novo biosynthesis II ,
superpathway of pyridoxal 5'-phosphate biosynthesis and salvage ,
superpathway of pyrimidine deoxyribonucleoside salvage ,
superpathway of pyrimidine deoxyribonucleosides degradation ,
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis ,
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) ,
superpathway of pyrimidine nucleobases salvage ,
superpathway of pyrimidine ribonucleosides degradation ,
superpathway of pyrimidine ribonucleosides salvage ,
superpathway of pyrimidine ribonucleotides de novo biosynthesis ,
superpathway of quinolone and alkylquinolone biosynthesis ,
superpathway of (R,R)-butanediol biosynthesis ,
superpathway of S-adenosyl-L-methionine biosynthesis ,
superpathway of salicylate degradation ,
superpathway of seleno-compound metabolism ,
superpathway of serine and glycine biosynthesis I ,
superpathway of sialic acids and CMP-sialic acids biosynthesis ,
superpathway of sulfate assimilation and cysteine biosynthesis ,
superpathway of sulfide oxidation (Starkeya novella) ,
superpathway of sulfolactate degradation ,
superpathway of taurine degradation ,
superpathway of testosterone and androsterone degradation ,
superpathway of tetrahydrofolate biosynthesis ,
superpathway of tetrahydrofolate biosynthesis and salvage ,
superpathway of tetrathionate reduction (Salmonella typhimurium) ,
superpathway of thiamin diphosphate biosynthesis I ,
superpathway of thiamin diphosphate biosynthesis II ,
superpathway of threonine metabolism ,
superpathway of trimethylamine degradation ,
superpathway of tryptophan biosynthesis ,
superpathway of tyrosine biosynthesis ,
superpathway of ubiquinol-8 biosynthesis (prokaryotic) ,
superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis ,
superpathway of UDP-N-acetylglucosamine-derived O-antigen building blocks biosynthesis ,
superpathway of unsaturated fatty acids biosynthesis (E. coli) ,
superpathway of vanillin and vanillate degradation ,
syringate degradation ,
taurine biosynthesis ,
taurine degradation I ,
taurine degradation III ,
taurine degradation IV ,
taxadiene biosynthesis (engineered) ,
TCA cycle I (prokaryotic) ,
TCA cycle VII (acetate-producers) ,
TCA cycle VIII (helicobacter) ,
teichoic acid (poly-glycerol) biosynthesis ,
terminal olefins biosynthesis I ,
terminal olefins biosynthesis II ,
testosterone and androsterone degradation to androstendione ,
tetrachloroethene degradation ,
tetrahydrofolate biosynthesis ,
tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate ,
tetrahydromonapterin biosynthesis ,
tetramethylpyrazine degradation ,
tetrathionate oxidation ,
tetrathionate reduction I (to thiosulfate) ,
tetrathionate reductiuon II (to trithionate) ,
theophylline degradation ,
thiamin diphosphate biosynthesis I (E. coli) ,
thiamin diphosphate biosynthesis II (Bacillus) ,
thiamin salvage II ,
thiamin salvage III ,
thiamin salvage IV (yeast) ,
thiamin triphosphate metabolism ,
thiazole biosynthesis I (E. coli) ,
thiazole biosynthesis II (Bacillus) ,
thiocyanate degradation I ,
thiocyanate degradation II ,
thio-molybdenum cofactor biosynthesis ,
thioredoxin pathway ,
thiosulfate disproportionation III (rhodanese) ,
thiosulfate disproportionation II (non thiol-dependent) ,
thiosulfate disproportionation I (thiol-dependent) ,
thiosulfate oxidation III (multienzyme complex) ,
thiosulfate oxidation II (to tetrathionate) ,
thiosulfate oxidation I (to tetrathionate) ,
threonine biosynthesis ,
threonine biosynthesis from homoserine ,
threonine degradation I ,
threonine degradation II ,
threonine degradation III (to methylglyoxal) ,
threonine degradation IV ,
thymine degradation ,
trans-3-hydroxy-L-proline degradation ,
trans-cinnamoyl-CoA biosynthesis ,
trans-lycopene biosynthesis I (bacteria) ,
trans, trans-farnesyl diphosphate biosynthesis ,
trehalose biosynthesis I ,
trehalose biosynthesis IV ,
trehalose biosynthesis V ,
trehalose degradation III ,
trehalose degradation II (trehalase) ,
trehalose degradation I (low osmolarity) ,
trehalose degradation IV ,
trehalose degradation VI (periplasmic) ,
triacylglycerol degradation ,
triclosan resistance ,
triethylamine degradation ,
trimethylamine degradation ,
tRNA charging ,
tRNA processing ,
tryptophan biosynthesis ,
tryptophan degradation II (via pyruvate) ,
tryptophan degradation I (via anthranilate) ,
tryptophan degradation IV (via indole-3-lactate) ,
tryptophan degradation IX ,
tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde ,
tryptophan degradation VI (via tryptamine) ,
tryptophan degradation XII (Geobacillus) ,
two-component alkanesulfonate monooxygenase ,
tyrosine biosynthesis I ,
tyrosine biosynthesis II ,
tyrosine biosynthesis III ,
tyrosine degradation II ,
ubiquinol-7 biosynthesis (prokaryotic) ,
ubiquinol-8 biosynthesis (prokaryotic) ,
ubiquinol-9 biosynthesis (prokaryotic) ,
UDP-2,3-diacetamido-2,3-dideoxy-α-D-mannuronate biosynthesis ,
UDP-α-D-glucuronate biosynthesis (from UDP-glucose) ,
UDP-D-galactose biosynthesis ,
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) ,
UDP-D-galacturonate biosynthesis II (from D-galacturonate) ,
UDP-glucose biosynthesis ,
UDP-N-acetyl-α-D-fucosamine biosynthesis ,
UDP-N-acetyl-α-D-galactosaminuronate biosynthesis ,
UDP-N-acetyl-α-D-quinovosamine biosynthesis ,
UDP-N-acetyl-β-L-quinovosamine biosynthesis ,
UDP-N-acetyl-D-galactosamine biosynthesis I ,
UDP-N-acetyl-D-glucosamine biosynthesis I ,
UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-DAP-containing) ,
UDP-N,N'-diacetylbacillosamine biosynthesis ,
UMP biosynthesis ,
uracil degradation III ,
uracil degradation II (oxidative) ,
uracil degradation I (reductive) ,
urate biosynthesis/inosine 5'-phosphate degradation ,
urate degradation to allantoin I ,
urate degradation to allantoin II ,
urea cycle ,
urea degradation I ,
urea degradation II ,
UTP and CTP de novo biosynthesis ,
UTP and CTP dephosphorylation I ,
UTP and CTP dephosphorylation II ,
valencene and 7-epi-α-selinene biosynthesis ,
valine biosynthesis ,
valine degradation I ,
valine degradation II ,
vancomycin resistance I ,
vancomycin resistance II ,
vanillin and vanillate degradation I ,
vanillin and vanillate degradation II ,
very long chain fatty acid biosynthesis I ,
very long chain fatty acid biosynthesis II ,
violacein biosynthesis ,
wax esters biosynthesis II ,
xanthan biosynthesis ,
xanthine and xanthosine salvage ,
xylose degradation I ,
xylose degradation III ,
zeaxanthin-β-D-diglucoside biosynthesis ,
zeaxanthin biosynthesis


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Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Sun Nov 23, 2014, biocyc14.