Pathway Tools
Intro Tutorial
discounted registration ends Sept 5, 2015
Pathway Tools
Intro Tutorial
discounted registration ends Sept 5, 2015
Pathway Tools
Intro Tutorial
discounted registration ends Sept 5, 2015
Pathway Tools
Intro Tutorial
discounted registration ends Sept 5, 2015
Pathway Tools
Intro Tutorial
discounted registration ends Sept 5, 2015
twitter

MetaCyc Organism: Methanocaldococcus jannaschii

Synonyms: strain JAL-1, OCM 168, NBRC 100440, Methanococcus jannaschii, JCM 10045, DSM 2661, CIP 104961, ATCC 43067

Rank: species

Taxonomic lineage: cellular organisms , Archaea , Euryarchaeota , Methanococci , Methanococcales , Methanocaldococcaceae , Methanocaldococcus

Direct sub-taxa of Methanocaldococcus jannaschii: Methanocaldococcus jannaschii DSM 2661

Unification Links: NCBI-Taxonomy:2190


Pathways present in Methanocaldococcus jannaschii or one of its sub-taxa (32).
These pathways were observed experimentally in this taxon or one of its sub-taxa:
3-dehydroquinate biosynthesis II (archaea) ,
4-hydroxybenzoate biosynthesis II (microbes) ,
5-aminoimidazole ribonucleotide biosynthesis II ,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea) ,
7-(3-amino-3-carboxypropyl)-wyosine biosynthesis ,
adenosine nucleotides degradation IV ,
adenosylcobalamin biosynthesis I (early cobalt insertion) ,
archaeosine biosynthesis ,
β-alanine biosynthesis III ,
chorismate biosynthesis from 3-dehydroquinate ,
chorismate biosynthesis II (archaea) ,
cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) ,
coenzyme B biosynthesis ,
coenzyme M biosynthesis I ,
factor 420 biosynthesis ,
factor 420 polyglutamylation ,
flavin biosynthesis II (archaea) ,
inosine-5'-phosphate biosynthesis III ,
lactate biosynthesis (archaea) ,
L-cysteine biosynthesis II (tRNA-dependent) ,
L-isoleucine biosynthesis II ,
L-leucine biosynthesis ,
L-lysine biosynthesis VI ,
L-selenocysteine biosynthesis II (archaea and eukaryotes) ,
L-serine biosynthesis ,
L-threonine biosynthesis ,
methanofuran biosynthesis ,
mevalonate pathway II (archaea) ,
myo-inositol biosynthesis ,
pyrimidine deoxyribonucleotides de novo biosynthesis IV ,
superpathway of pyrimidine deoxyribonucleoside salvage ,
tetrahydromethanopterin biosynthesis

Additional pathways which may be present in Methanocaldococcus jannaschii and all its sub-taxa (266)
These pathways were inferred using their expected taxonomic range:
[2Fe-2S] iron-sulfur cluster biosynthesis ,
2-oxobutanoate degradation II ,
2-oxoglutarate decarboxylation to succinyl-CoA ,
2-oxoisovalerate decarboxylation to isobutanoyl-CoA ,
3-phenylpropanoate degradation ,
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis ,
4-aminobenzoate biosynthesis ,
4-hydroxyphenylpyruvate biosynthesis ,
acetate conversion to acetyl-CoA ,
acetate formation from acetyl-CoA I ,
acetate formation from acetyl-CoA II ,
acyl-ACP thioesterase pathway ,
acyl carrier protein metabolism I ,
acyl-CoA hydrolysis ,
adenine and adenosine salvage I ,
adenine and adenosine salvage III ,
adenine and adenosine salvage IV ,
adenine and adenosine salvage VI ,
adenosine 5'-phosphoramidate biosynthesis ,
adenosine deoxyribonucleotides de novo biosynthesis ,
adenosine nucleotides degradation II ,
adenosine ribonucleotides de novo biosynthesis ,
adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I ,
adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II ,
adenosylcobalamin biosynthesis II (late cobalt incorporation) ,
adenosylcobalamin salvage from cobalamin ,
adenosylcobalamin salvage from cobinamide II ,
ammonia oxidation I (aerobic) ,
archaetidylinositol biosynthesis ,
archaetidylserine and archaetidylethanolamine biosynthesis ,
arsenate detoxification II (glutaredoxin) ,
arsenite oxidation II (respiratory) ,
base-degraded thiamin salvage ,
carbon disulfide oxidation I (anaerobic) ,
carbon tetrachloride degradation I ,
CDP-archaeol biosynthesis ,
chitin degradation I (archaea) ,
chlorogenic acid degradation ,
cis-calamenene related sesquiterpenoids biosynthesis ,
CMP phosphorylation ,
CO2 fixation into oxaloacetate (anaplerotic) ,
cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation) ,
coenzyme A biosynthesis I ,
coenzyme B/coenzyme M regeneration ,
costunolide biosynthesis ,
dammara-20,24-diene biosynthesis ,
demethylmenaquinol-8 biosynthesis II ,
D-galactonate degradation ,
dimethyl sulfoxide degradation ,
di-myo-inositol phosphate biosynthesis ,
diphthamide biosynthesis (archaea) ,
D-malate degradation ,
D-mannose degradation ,
D-serine metabolism ,
dTDP-L-rhamnose biosynthesis I ,
epoxysqualene biosynthesis ,
ethanol degradation I ,
ethanol degradation II ,
factor 430 biosynthesis ,
fatty acid β-oxidation III (unsaturated, odd number) ,
folate polyglutamylation ,
folate transformations I ,
fructose degradation ,
GDP-glucose biosynthesis ,
GDP-mannose biosynthesis ,
gentisate degradation I ,
geranyl diphosphate biosynthesis ,
geranylgeranyl diphosphate biosynthesis ,
gluconeogenesis I ,
gluconeogenesis II (Methanobacterium thermoautotrophicum) ,
glucose and glucose-1-phosphate degradation ,
glucosylglycerate biosynthesis I ,
glutaminyl-tRNAgln biosynthesis via transamidation ,
glycerol degradation I ,
glycine betaine biosynthesis IV (from glycine) ,
glycine betaine biosynthesis V (from glycine) ,
glycine betaine degradation I ,
glycine biosynthesis III ,
glycine cleavage ,
glycogen degradation I (bacterial) ,
glycolysis I (from glucose 6-phosphate) ,
glycolysis II (from fructose 6-phosphate) ,
glycolysis V (Pyrococcus) ,
glyoxylate cycle ,
guanine and guanosine salvage III ,
guanosine deoxyribonucleotides de novo biosynthesis I ,
heme biosynthesis III (from siroheme) ,
heptaprenyl diphosphate biosynthesis ,
homolactic fermentation ,
homospermidine biosynthesis ,
hydrogen oxidation III (anaerobic, NADP) ,
hydrogen production II ,
hydrogen production III ,
hydrogen production IV ,
hydrogen production V ,
hydroxymethylpyrimidine salvage ,
icosapentaenoate biosynthesis V (Δ8 desaturase) ,
incomplete reductive TCA cycle ,
isoprene biosynthesis II (engineered) ,
kojibiose degradation ,
L-alanine degradation IV ,
laminaribiose degradation ,
L-arabinose degradation IV ,
L-arginine biosynthesis II (acetyl cycle) ,
L-arginine biosynthesis IV (archaebacteria) ,
L-arginine biosynthesis I (via L-ornithine) ,
L-arginine degradation I (arginase pathway) ,
L-arginine degradation V (arginine deiminase pathway) ,
L-asparagine biosynthesis III (tRNA-dependent) ,
L-asparagine degradation I ,
L-aspartate biosynthesis ,
L-aspartate degradation I ,
L-citrulline degradation ,
L-cysteine biosynthesis I ,
L-cysteine biosynthesis III (from L-homocysteine) ,
L-glutamate and L-glutamine biosynthesis ,
L-glutamate biosynthesis I ,
L-glutamate biosynthesis II ,
L-glutamate biosynthesis III ,
L-glutamate degradation I ,
L-glutamate degradation X ,
L-glutamine biosynthesis I ,
L-glutamine degradation II ,
L-histidine biosynthesis ,
lipoate salvage I ,
L-isoleucine degradation I ,
L-lactaldehyde degradation (aerobic) ,
L-lysine biosynthesis V ,
L-methionine degradation I (to L-homocysteine) ,
L-methionine salvage cycle I (bacteria and plants) ,
L-methionine salvage cycle III ,
long-chain fatty acid activation ,
L-ornithine biosynthesis ,
L-phenylalanine biosynthesis I ,
L-proline degradation ,
L-threonine degradation II ,
L-tryptophan biosynthesis ,
L-tyrosine biosynthesis I ,
L-valine biosynthesis ,
mannosylglycerate biosynthesis I ,
melibiose degradation ,
menaquinol-7 biosynthesis ,
menaquinol-8 biosynthesis ,
Methanobacterium thermoautotrophicum biosynthetic metabolism ,
methanogenesis from acetate ,
methanogenesis from dimethylamine ,
methanogenesis from dimethylsulfide ,
methanogenesis from H2 and CO2 ,
methanogenesis from methanethiol ,
methanogenesis from methanol ,
methanogenesis from methylamine ,
methanogenesis from methylthiopropanoate ,
methanogenesis from tetramethylammonium ,
methanogenesis from trimethylamine ,
methyl-coenzyme M oxidation to CO2 ,
methyl-coenzyme M reduction to methane ,
methylhalides biosynthesis (plants) ,
methylwyosine biosynthesis ,
mevalonate pathway I ,
mevalonate pathway III (archaea) ,
molybdenum cofactor biosynthesis ,
NADH repair ,
nitrate reduction I (denitrification) ,
nitrogen fixation I (ferredoxin) ,
nitrogen fixation II (flavodoxin) ,
nonaprenyl diphosphate biosynthesis I ,
octaprenyl diphosphate biosynthesis ,
phenylethanol biosynthesis ,
phospholipases ,
phosphopantothenate biosynthesis III ,
plumbagin biosynthesis ,
polyhydroxybutanoate biosynthesis ,
polyhydroxydecanoate biosynthesis ,
polyisoprenoid biosynthesis (E. coli) ,
proline to cytochrome bo oxidase electron transfer ,
propanoyl CoA degradation I ,
protein N-glycosylation (Haloferax volcanii) ,
protein N-glycosylation (Methanococcus voltae) ,
PRPP biosynthesis I ,
purine deoxyribonucleosides degradation I ,
purine deoxyribonucleosides salvage ,
purine nucleotides degradation II (aerobic) ,
purine ribonucleosides degradation ,
pyridoxal 5'-phosphate biosynthesis II ,
pyrimidine deoxyribonucleosides degradation ,
pyrimidine deoxyribonucleosides salvage ,
pyrimidine deoxyribonucleotide phosphorylation ,
pyrimidine deoxyribonucleotides de novo biosynthesis I ,
pyrimidine deoxyribonucleotides de novo biosynthesis II ,
pyrimidine deoxyribonucleotides de novo biosynthesis III ,
pyrimidine deoxyribonucleotides dephosphorylation ,
pyrimidine nucleobases salvage I ,
pyrimidine nucleobases salvage II ,
pyrimidine ribonucleosides degradation ,
pyrimidine ribonucleosides salvage I ,
pyrimidine ribonucleosides salvage II ,
pyrimidine ribonucleosides salvage III ,
pyruvate decarboxylation to acetyl CoA ,
pyruvate fermentation to acetate and alanine ,
pyruvate fermentation to acetate III ,
pyruvate fermentation to isobutanol (engineered) ,
reactive oxygen species degradation ,
reductive acetyl coenzyme A pathway ,
reductive TCA cycle I ,
ribose degradation ,
S-adenosyl-L-methionine biosynthesis ,
S-adenosyl-L-methionine cycle I ,
sciadonate biosynthesis ,
selinene biosynthesis ,
S-methyl-5'-thioadenosine degradation I ,
S-methyl-5-thio-α-D-ribose 1-phosphate degradation ,
spermidine biosynthesis I ,
spermidine biosynthesis III ,
spermine biosynthesis ,
starch degradation III ,
starch degradation IV ,
starch degradation V ,
sulfate reduction IV (dissimilatory) ,
sulfur reduction I ,
sulfur reduction II (via polysulfide) ,
superpathay of heme biosynthesis from glutamate ,
superpathway of acetate utilization and formation ,
superpathway of adenosine nucleotides de novo biosynthesis I ,
superpathway of adenosine nucleotides de novo biosynthesis II ,
superpathway of Allium flavor precursors ,
superpathway of GDP-mannose-derived O-antigen building blocks biosynthesis ,
superpathway of glyoxylate bypass and TCA ,
superpathway of guanosine nucleotides de novo biosynthesis I ,
superpathway of hydrogen production ,
superpathway of L-cysteine biosynthesis (mammalian) ,
superpathway of L-serine and glycine biosynthesis I ,
superpathway of L-threonine biosynthesis ,
superpathway of menaquinol-7 biosynthesis ,
superpathway of methanogenesis ,
superpathway of pentose and pentitol degradation ,
superpathway of purine nucleotides de novo biosynthesis I ,
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis ,
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) ,
superpathway of pyrimidine nucleobases salvage ,
superpathway of pyrimidine ribonucleosides degradation ,
superpathway of pyrimidine ribonucleosides salvage ,
taxadiene biosynthesis (engineered) ,
TCA cycle I (prokaryotic) ,
tetrapyrrole biosynthesis I (from glutamate) ,
tetrathionate oxidation ,
thio-molybdenum cofactor biosynthesis ,
thioredoxin pathway ,
trans-lycopene biosynthesis I (bacteria) ,
trans, trans-farnesyl diphosphate biosynthesis ,
trehalose biosynthesis V ,
trehalose biosynthesis VI ,
triacylglycerol degradation ,
tRNA charging ,
tRNA splicing ,
UDP-α-D-glucuronate biosynthesis (from UDP-glucose) ,
UDP-D-galactose biosynthesis ,
UDP-glucose biosynthesis ,
UDP-N-acetyl-D-glucosamine biosynthesis I ,
UMP biosynthesis ,
uracil degradation I (reductive) ,
UTP and CTP de novo biosynthesis ,
UTP and CTP dephosphorylation I ,
valencene and 7-epi-α-selinene biosynthesis ,
xanthine and xanthosine salvage ,
xylose degradation III ,
xylose degradation IV


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 19.0 on Tue Sep 1, 2015, biocyc13.