Metabolic Modeling Tutorial
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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MetaCyc Organism: Ceratodon purpureus

Rank: species

Taxonomic lineage: cellular organisms , Eukaryota , Viridiplantae , Streptophyta , Streptophytina , Embryophyta , Bryophyta , Bryophytina , Bryopsida , Dicranidae , Dicranales , Ditrichaceae , Ceratodon

Unification Links: NCBI-Taxonomy:3225


Pathways present in Ceratodon purpureus or one of its sub-taxa (1).
These pathways were observed experimentally in this taxon or one of its sub-taxa:
dicranin biosynthesis

Additional pathways which may be present in Ceratodon purpureus and all its sub-taxa (683)
These pathways were inferred using their expected taxonomic range:
(+)-camphor biosynthesis ,
(1,4)-β-xylan degradation ,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants) ,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) ,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3) ,
2,3-cis-flavanols biosynthesis ,
2,3-trans-flavanols biosynthesis ,
2,4,6-trinitrotoluene degradation ,
26,27-dehydrozymosterol metabolism ,
[2Fe-2S] iron-sulfur cluster biosynthesis ,
2-oxobutanoate degradation I ,
2-oxoglutarate decarboxylation to succinyl-CoA ,
2-oxoisovalerate decarboxylation to isobutanoyl-CoA ,
3β-hydroxysesquiterpene lactone biosynthesis ,
3-carene biosynthesis ,
3-dehydroquinate biosynthesis I ,
(3E)-4,8-dimethylnona-1,3,7-triene biosynthesis ,
3-methylthiopropanoate biosynthesis ,
3-phosphoinositide biosynthesis ,
3-phosphoinositide degradation ,
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis ,
4-aminobenzoate biosynthesis ,
4-aminobutyrate degradation ,
4-aminobutyrate degradation IV ,
4-hydroxybenzoate biosynthesis I (eukaryotes) ,
4-hydroxybenzoate biosynthesis IV ,
4-hydroxybenzoate biosynthesis V ,
4-hydroxycoumarin and dicoumarol biosynthesis ,
4-hydroxyphenylpyruvate biosynthesis ,
5-aminoimidazole ribonucleotide biosynthesis I ,
5-deoxystrigol biosynthesis ,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I ,
9-lipoxygenase and 9-allene oxide synthase pathway ,
9-lipoxygenase and 9-hydroperoxide lyase pathway ,
abscisic acid biosynthesis ,
abscisic acid biosynthesis shunt ,
abscisic acid glucose ester biosynthesis ,
acetaldehyde biosynthesis I ,
acetaldehyde biosynthesis II ,
acetyl-CoA biosynthesis III (from citrate) ,
acyl-ACP thioesterase pathway ,
acyl carrier protein metabolism II (mammalian) ,
acyl-CoA hydrolysis ,
adenine and adenosine salvage II ,
adenine and adenosine salvage II ,
adenine and adenosine salvage III ,
adenosine 5'-phosphoramidate biosynthesis ,
adenosine deoxyribonucleotides de novo biosynthesis ,
adenosine nucleotides degradation I ,
adenosine nucleotides degradation II ,
adenosine ribonucleotides de novo biosynthesis ,
aerobic respiration I (cytochrome c) ,
aerobic respiration III (alternative oxidase pathway) ,
afrormosin conjugates interconversion ,
alanine biosynthesis II ,
alanine biosynthesis III ,
alanine degradation III ,
alanine degradation II (to D-lactate) ,
alkane biosynthesis II ,
alkane oxidation ,
allantoin degradation to glyoxylate II ,
allantoin degradation to glyoxylate III ,
allantoin degradation to ureidoglycolate II (ammonia producing) ,
allantoin degradation to ureidoglycolate I (urea producing) ,
all-trans-decaprenyl diphosphate biosynthesis ,
all-trans-farnesol biosynthesis ,
all trans undecaprenyl diphosphate biosynthesis ,
α-amyrin biosynthesis ,
α-linolenate biosynthesis ,
ammonia assimilation cycle I ,
ammonia assimilation cycle II ,
anthranilate degradation IV (aerobic) ,
apigenin glycosides biosynthesis ,
apigeninidin 5-O-glucoside biosynthesis ,
arabidiol biosynthesis ,
arachidonate biosynthesis ,
arginine biosynthesis II (acetyl cycle) ,
arginine biosynthesis I (via L-ornithine) ,
arginine degradation I (arginase pathway) ,
arginine degradation V (arginine deiminase pathway) ,
arginine degradation VI (arginase 2 pathway) ,
arginine degradation X (arginine monooxygenase pathway) ,
ascorbate glutathione cycle ,
asparagine biosynthesis I ,
asparagine biosynthesis II ,
asparagine degradation I ,
asparagine degradation II ,
aspartate biosynthesis ,
aspartate degradation I ,
baicalein degradation (hydrogen peroxide detoxification) ,
baicalein metabolism ,
baruol biosynthesis ,
benzoate biosynthesis I (CoA-dependent, β-oxidative) ,
benzoate biosynthesis II (CoA-independent, non-β-oxidative) ,
benzoate biosynthesis III (CoA-dependent, non-β-oxidative) ,
benzoyl-CoA biosynthesis ,
bergamotene biosynthesis I ,
bergamotene biosynthesis II ,
β-alanine biosynthesis I ,
β-alanine biosynthesis II ,
beta-carboline biosynthesis ,
β-carotene biosynthesis ,
β-carotene biosynthesis (engineered) ,
β-caryophyllene biosynthesis ,
β-cubebene biosynthesis ,
biotin biosynthesis from 8-amino-7-oxononanoate I ,
biotin-carboxyl carrier protein assembly ,
bisabolene biosynthesis ,
brassinosteroid biosynthesis I ,
brassinosteroid biosynthesis II ,
C4 photosynthetic carbon assimilation cycle, NAD-ME type ,
C4 photosynthetic carbon assimilation cycle, NADP-ME type ,
caffeoylglucarate biosynthesis ,
callose biosynthesis ,
Calvin-Benson-Bassham cycle ,
(-)-camphor biosynthesis ,
cardiolipin biosynthesis II ,
carotenoid cleavage ,
CDP-diacylglycerol biosynthesis I ,
CDP-diacylglycerol biosynthesis II ,
cellulose biosynthesis ,
ceramide degradation ,
ceramide de novo biosynthesis ,
C-glycosylflavone biosynthesis I ,
C-glycosylflavone biosynthesis II ,
C-glycosylflavone biosynthesis III ,
chitin degradation II ,
chlorogenic acid biosynthesis I ,
chlorogenic acid biosynthesis II ,
chlorogenic acid degradation ,
chlorophyll a biosynthesis I ,
chlorophyll a biosynthesis II ,
chlorophyll a degradation I ,
chlorophyll a degradation II ,
chlorophyll cycle ,
chlorophyllide a biosynthesis I (aerobic, light-dependent) ,
chlorophyllide a biosynthesis III (aerobic, light independent) ,
choline biosynthesis I ,
choline biosynthesis III ,
choline degradation I ,
chorismate biosynthesis from 3-dehydroquinate ,
chorismate biosynthesis I ,
chrysoeriol biosynthesis ,
chrysophanol biosynthesis ,
cinnamate esters biosynthesis ,
cis-calamenene related sesquiterpenoids biosynthesis ,
cis-zeatin biosynthesis ,
citrulline degradation ,
CMP-2-keto-3-deoxy-D-glycero-D-galacto-nononate biosynthesis ,
CMP-KDO biosynthesis II (from D-arabinose 5-phosphate) ,
CMP-N-acetylneuraminate biosynthesis I (eukaryotes) ,
CMP-N-glycoloylneuraminate biosynthesis ,
CMP phosphorylation ,
CO2 fixation into oxaloacetate (anapleurotic) ,
coenzyme A biosynthesis I ,
costunolide biosynthesis ,
coumarins biosynthesis (engineered) ,
crepenynate biosynthesis ,
curcumene biosynthesis ,
cuticular wax biosynthesis ,
cutin biosynthesis ,
cyanate degradation ,
cyanide degradation ,
cyanide detoxification I ,
cyclopropane and cyclopropene fatty acid biosynthesis ,
cysteine biosynthesis I ,
cytokinin-O-glucosides biosynthesis ,
cytokinins 7-N-glucoside biosynthesis ,
cytokinins 9-N-glucoside biosynthesis ,
cytokinins degradation ,
dammara-20,24-diene biosynthesis ,
dehydroscoulerine biosynthesis ,
δ-carotene biosynthesis ,
δ-guaiene biosynthesis ,
detoxification of reactive carbonyls in chloroplasts ,
dhurrin degradation ,
diacylglyceryl-N,N,N-trimethylhomoserine biosynthesis ,
dimethylsulfoniopropionate biosynthesis II (Spartina) ,
dimethylsulfoniopropionate biosynthesis I (Wollastonia) ,
dimethylsulfoniopropionate degradation I (cleavage) ,
dimethyl sulfoxide degradation ,
diphthamide biosynthesis (eukaryotes) ,
diphyllin biosynthesis ,
divinyl ether biosynthesis I ,
divinyl ether biosynthesis II ,
D-mannose degradation ,
D-myo-inositol (1,3,4)-trisphosphate biosynthesis ,
D-myo-inositol (1,4,5,6)-tetrakisphosphate biosynthesis ,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis ,
D-myo-inositol (1,4,5)-trisphosphate degradation ,
D-myo-inositol (3,4,5,6)-tetrakisphosphate biosynthesis ,
D-myo-inositol-5-phosphate metabolism ,
docosahexanoate biosynthesis I ,
docosahexanoate biosynthesis II ,
dolichyl-diphosphooligosaccharide biosynthesis ,
D-serine degradation ,
D-sorbitol degradation II ,
(E,E)-4,8,12-trimethyltrideca-1,3,7,11-tetraene biosynthesis ,
eicosapentaenoate biosynthesis I (algae and lower plants) ,
ent-kaurene biosynthesis I ,
ent -kaurene biosynthesis II ,
Entner-Doudoroff pathway I ,
epoxy fatty acid biosynthesis ,
epoxysqualene biosynthesis ,
ethanol degradation II ,
ethylene biosynthesis I (plants) ,
eudesmol biosynthesis ,
eugenol and isoeugenol biosynthesis ,
eumelanin biosynthesis ,
extended VTC2 cycle ,
farnesylcysteine salvage pathway ,
fatty acid activation ,
fatty acid α-oxidation I ,
fatty acid β-oxidation III (unsaturated, odd number) ,
fatty acid β-oxidation II (peroxisome) ,
fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) ,
fatty acid biosynthesis initiation I ,
fatty acid biosynthesis (plant mitochondria) ,
fatty acid elongation -- saturated ,
fenchol biosynthesis I ,
fenchone biosynthesis ,
flavin biosynthesis I (bacteria and plants) ,
flavonoid biosynthesis (in equisetum) ,
fluoroacetate and fluorothreonine biosynthesis ,
folate polyglutamylation ,
folate transformations I ,
folate transformations II ,
formaldehyde oxidation II (glutathione-dependent) ,
fructan biosynthesis ,
fructan degradation ,
GA12 biosynthesis ,
galactose degradation III ,
galactose degradation I (Leloir pathway) ,
gallate biosynthesis ,
γ-linolenate biosynthesis I (plants) ,
GDP-glucose biosynthesis ,
GDP-L-fucose biosynthesis I (from GDP-D-mannose) ,
GDP-L-fucose biosynthesis II (from L-fucose) ,
GDP-L-galactose biosynthesis ,
GDP-mannose biosynthesis ,
geodin biosynthesis ,
geraniol and geranial biosynthesis ,
geranyl acetate biosynthesis ,
geranyl diphosphate biosynthesis ,
geranylgeranyl diphosphate biosynthesis ,
gibberellin biosynthesis II (early C-3 hydroxylation) ,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation) ,
gibberellin inactivation III (epoxidation) ,
gibberellin inactivation II (methylation) ,
gluconeogenesis I ,
glucose and glucose-1-phosphate degradation ,
glutamate and glutamine biosynthesis ,
glutamate biosynthesis I ,
glutamate biosynthesis IV ,
glutamate biosynthesis V ,
glutamate degradation I ,
glutamate degradation IV ,
glutamate removal from folates ,
glutamine biosynthesis I ,
glutamine biosynthesis III ,
glutamine degradation I ,
glutathione biosynthesis ,
glutathione-mediated detoxification II ,
glutathione redox reactions I ,
glutathione redox reactions II ,
glutathionylspermidine biosynthesis ,
glycerol-3-phosphate shuttle ,
glycerol degradation I ,
glycerol degradation V ,
glycine betaine biosynthesis III (plants) ,
glycine betaine degradation I ,
glycine biosynthesis I ,
glycine biosynthesis III ,
glycine cleavage ,
glycogen degradation I ,
glycogen degradation III ,
glycolipid biosynthesis ,
glycolipid desaturation ,
glycolysis I (from glucose 6-phosphate) ,
glycolysis II (from fructose 6-phosphate) ,
glycolysis IV (plant cytosol) ,
glyoxylate cycle ,
guanine and guanosine salvage II ,
guanine and guanosine salvage III ,
guanosine deoxyribonucleotides de novo biosynthesis I ,
guanosine nucleotides degradation I ,
guanosine nucleotides degradation II ,
heme biosynthesis I (aerobic) ,
heme degradation ,
heptadecane biosynthesis ,
heptaprenyl diphosphate biosynthesis ,
hexaprenyl diphosphate biosynthesis ,
histidine biosynthesis ,
homocysteine and cysteine interconversion ,
homogalacturonan biosynthesis ,
homogalacturonan degradation ,
homolactic fermentation ,
homoserine biosynthesis ,
homospermidine biosynthesis ,
hydroxycinnamic acid tyramine amides biosynthesis ,
hydroxyjasmonate sulfate biosynthesis ,
hydroxylated fatty acid biosynthesis (plants) ,
hydroxymethylpyrimidine salvage ,
hypoglycin biosynthesis ,
hypusine biosynthesis ,
indican biosynthesis ,
indigo biosynthesis ,
indole-3-acetate activation I ,
indole-3-acetate activation II ,
indole-3-acetate biosynthesis I ,
indole-3-acetate biosynthesis II ,
indole-3-acetate conjugate biosynthesis II ,
indole-3-acetate degradation V ,
indole-3-acetate degradation VI ,
indole-3-acetate degradation VII ,
indole-3-acetyl-ester conjugate biosynthesis ,
indole degradation to anthranil and anthranilate ,
inosine-5'-phosphate biosynthesis II ,
inositol pyrophosphates biosynthesis ,
isoleucine biosynthesis I ,
isoleucine biosynthesis I (from threonine) ,
isoleucine degradation I ,
isoprene biosynthesis I ,
isoprene biosynthesis II (engineered) ,
isovitexin and isovitexin glycosides biosynthesis ,
jasmonic acid biosynthesis ,
jasmonoyl-amino acid conjugates biosynthesis I ,
jasmonoyl-amino acid conjugates biosynthesis II ,
justicidin B biosynthesis ,
kauralexin biosynthesis ,
(KDO)2-lipid A biosynthesis I ,
KDO transfer to lipid IVA I ,
laminaribiose degradation ,
L-ascorbate biosynthesis II (L-gulose pathway) ,
L-ascorbate biosynthesis I (L-galactose pathway) ,
L-ascorbate degradation III ,
L-ascorbate degradation IV ,
L-ascorbate degradation V ,
L-carnitine biosynthesis ,
L-cysteine degradation II ,
L-dopachrome biosynthesis ,
leucine biosynthesis ,
leucine degradation I ,
L-glutamine biosynthesis II (tRNA-dependent) ,
linalool biosynthesis I ,
linalool biosynthesis II ,
linoleate biosynthesis I (plants) ,
lipid IVA biosynthesis ,
lipoate biosynthesis and incorporation I ,
L-Nδ-acetylornithine biosynthesis ,
L-sorbose degradation ,
lupeol biosynthesis ,
lutein biosynthesis ,
luteolin glycosides biosynthesis ,
luteolinidin 5-O-glucoside biosynthesis ,
lysine degradation II (mammalian) ,
mannosyl-glycoprotein N-acetylglucosaminyltransferases ,
marneral biosynthesis ,
matairesinol biosynthesis ,
melibiose degradation ,
methionine biosynthesis II ,
methionine degradation II ,
methionine degradation I (to homocysteine) ,
methionine salvage cycle I (bacteria and plants) ,
methionine salvage cycle II (plants) ,
methylerythritol phosphate pathway II ,
methylglyoxal degradation II ,
methylglyoxal degradation III ,
methylglyoxal degradation VII ,
methylhalides biosynthesis (plants) ,
methyl indole-3-acetate interconversion ,
methyl ketone biosynthesis ,
methylquercetin biosynthesis ,
mevalonate pathway I ,
mitochondrial L-carnitine shuttle ,
molybdenum cofactor biosynthesis ,
momilactone A biosynthesis ,
monoacylglycerol metabolism (yeast) ,
myo-inositol biosynthesis ,
NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde ,
NAD biosynthesis I (from aspartate) ,
NAD biosynthesis II (from tryptophan) ,
NADH repair ,
NAD/NADH phosphorylation and dephosphorylation ,
naringenin biosynthesis (engineered) ,
neoxanthin biosynthesis ,
nevadensin biosynthesis ,
nicotianamine biosynthesis ,
nitrate reduction II (assimilatory) ,
nitric oxide biosynthesis (plants) ,
nonaprenyl diphosphate biosynthesis I ,
nonaprenyl diphosphate biosynthesis II ,
noscapine biosynthesis ,
octanoyl-ACP biosynthesis (mitochondria, yeast) ,
octaprenyl diphosphate biosynthesis ,
o-diquinones biosynthesis ,
oleate biosynthesis I (plants) ,
oligomeric urushiol biosynthesis ,
ω-hydroxylation of caprate and laurate ,
ω- hydroxylation of laurate ,
oxalate biosynthesis ,
oxalate degradation IV ,
oxidized GTP and dGTP detoxification ,
oxygenic photosynthesis ,
palmitate biosynthesis II (bacteria and plants) ,
palmitoleate biosynthesis II ,
pantothenate and coenzyme A biosynthesis III ,
pantothenate and coenzyme A biosynthesis II (plants) ,
papaverine biosynthesis ,
patchoulol biosynthesis ,
pentacyclic triterpene biosynthesis ,
pentose phosphate pathway ,
pentose phosphate pathway (non-oxidative branch) ,
pentose phosphate pathway (oxidative branch) I ,
phenolic malonylglucosides biosynthesis ,
phenylalanine biosynthesis (cytosolic, plants) ,
phenylalanine biosynthesis II ,
phenylalanine degradation V ,
phenylethanol biosynthesis ,
phenylpropanoids methylation (ice plant) ,
phloridzin biosynthesis ,
phosphate acquisition ,
phosphate utilization in cell wall regeneration ,
phosphatidate metabolism, as a signaling molecule ,
phosphatidylcholine biosynthesis I ,
phosphatidylcholine biosynthesis II ,
phosphatidylcholine biosynthesis III ,
phosphatidylcholine biosynthesis IV ,
phosphatidylcholine resynthesis via glycerophosphocholine ,
phosphatidylethanolamine biosynthesis I ,
phosphatidylethanolamine biosynthesis III ,
phosphatidylglycerol biosynthesis II (non-plastidic) ,
phosphatidylglycerol biosynthesis I (plastidic) ,
phospholipases ,
phospholipid biosynthesis II ,
phospholipid desaturation ,
phospholipid remodeling (phosphatidate, yeast) ,
phospholipid remodeling (phosphatidylcholine, yeast) ,
phospholipid remodeling (phosphatidylethanolamine, yeast) ,
phosphopantothenate biosynthesis I ,
photorespiration ,
photosynthesis light reactions ,
phylloquinol biosynthesis ,
phytate degradation I ,
phytate degradation II ,
phytochelatins biosynthesis ,
phytochromobilin biosynthesis ,
phytyl diphosphate biosynthesis ,
pinitol biosynthesis I ,
pinitol biosynthesis II ,
pinolenic acid and coniferonic acid biosynthesis ,
plastoquinol-9 biosynthesis I ,
plaunotol biosynthesis ,
plumbagin biosynthesis ,
poly-hydroxy fatty acids biosynthesis ,
polyisoprenoid biosynthesis (E. coli) ,
polyvinyl alcohol degradation ,
proline biosynthesis II (from arginine) ,
proline biosynthesis III ,
proline biosynthesis IV ,
proline degradation ,
propionyl CoA degradation ,
protein O-[N-acetyl]-glucosylation ,
protein ubiquitination ,
pseudouridine degradation ,
pterostilbene biosynthesis ,
purine deoxyribonucleosides salvage ,
purine nucleotides degradation I (plants) ,
putrescine biosynthesis II ,
putrescine biosynthesis III ,
putrescine biosynthesis IV ,
putrescine degradation IV ,
pyridine nucleotide cycling (plants) ,
pyridoxal 5'-phosphate biosynthesis II ,
pyridoxal 5'-phosphate salvage I ,
pyridoxal 5'-phosphate salvage II (plants) ,
pyrimidine deoxyribonucleosides salvage ,
pyrimidine deoxyribonucleotide phosphorylation ,
pyrimidine deoxyribonucleotides de novo biosynthesis I ,
pyrimidine deoxyribonucleotides dephosphorylation ,
pyrimidine nucleobases salvage I ,
pyrimidine ribonucleosides salvage I ,
pyrimidine ribonucleosides salvage II ,
pyruvate decarboxylation to acetyl CoA ,
pyruvate fermentation to acetate VII ,
pyruvate fermentation to butanol II ,
pyruvate fermentation to ethanol II ,
pyruvate fermentation to hexanol ,
pyruvate fermentation to isobutanol (engineered) ,
pyruvate fermentation to lactate ,
quercetin sulfate biosynthesis ,
raspberry ketone biosynthesis ,
ricinine degradation ,
ricinoleate biosynthesis ,
rubber biosynthesis ,
S-adenosyl-L-methionine biosynthesis ,
S-adenosyl-L-methionine cycle II ,
salicylate biosynthesis I ,
salicylate biosynthesis II ,
salicylate glucosides biosynthesis IV ,
salidroside biosynthesis ,
salvigenin biosynthesis ,
santalene biosynthesis I ,
saponin biosynthesis II ,
saponin biosynthesis III ,
saponin biosynthesis IV ,
sciadonate biosynthesis ,
scopoletin biosynthesis ,
sedoheptulose bisphosphate bypass ,
seed germination protein turnover ,
selenate reduction ,
seleno-amino acid biosynthesis ,
seleno-amino acid detoxification and volatilization I ,
seleno-amino acid detoxification and volatilization II ,
seleno-amino acid detoxification and volatilization III ,
selenocysteine biosynthesis II (archaea and eukaryotes) ,
selinene biosynthesis ,
serine biosynthesis ,
serine racemization ,
serinol biosynthesis ,
serotonin and melatonin biosynthesis ,
sesamin biosynthesis ,
siroheme biosynthesis ,
S-methyl-5'-thioadenosine degradation I ,
S-methyl-5-thio-α-D-ribose 1-phosphate degradation ,
S-methylmethionine cycle ,
spermidine biosynthesis I ,
spermidine hydroxycinnamic acid conjugates biosynthesis ,
spermine and spermidine degradation II ,
spermine and spermidine degradation III ,
spermine biosynthesis ,
sphingolipid biosynthesis (plants) ,
sphingomyelin metabolism ,
sporopollenin precursor biosynthesis ,
stachyose degradation ,
starch biosynthesis ,
starch degradation II ,
stearate biosynthesis II (bacteria and plants) ,
sterol:steryl ester interconversion (yeast) ,
sucrose biosynthesis I (from photosynthesis) ,
sucrose biosynthesis II ,
sucrose degradation III (sucrose invertase) ,
sucrose degradation II (sucrose synthase) ,
sulfate activation for sulfonation ,
sulfate reduction II (assimilatory) ,
sulfite oxidation IV ,
sulfolipid biosynthesis ,
superoxide radicals degradation ,
superpathway of 1D-myo-inositol hexakisphosphate biosynthesis (plants) ,
superpathway of adenosine nucleotides de novo biosynthesis I ,
superpathway of adenosine nucleotides de novo biosynthesis II ,
superpathway of allantoin degradation in plants ,
superpathway of alliin degradation ,
superpathway of ammonia assimilation (plants) ,
superpathway of anaerobic sucrose degradation ,
superpathway of asparagine biosynthesis ,
superpathway of C28 brassinosteroid biosynthesis ,
superpathway of carotenoid biosynthesis ,
superpathway of choline biosynthesis ,
superpathway of citrulline metabolism ,
superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle ,
superpathway of dimethylsulfoniopropionate degradation ,
superpathway of D-myo-inositol (1,4,5)-trisphosphate metabolism ,
superpathway of fatty acid biosynthesis II (plant) ,
superpathway of fermentation (Chlamydomonas reinhardtii) ,
superpathway of flavones and derivatives biosynthesis ,
superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) ,
superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) ,
superpathway of gibberellin biosynthesis ,
superpathway of gibberellin GA12 biosynthesis ,
superpathway of glycolysis and Entner-Doudoroff ,
superpathway of glyoxylate cycle and fatty acid degradation ,
superpathway of guanosine nucleotides degradation (plants) ,
superpathway of guanosine nucleotides de novo biosynthesis I ,
superpathway of hydrolyzable tannin biosynthesis ,
superpathway of indole-3-acetate conjugate biosynthesis ,
superpathway of inositol phosphate compounds ,
superpathway of jasmonoyl-amino acid conjugates biosynthesis ,
superpathway of leucine, valine, and isoleucine biosynthesis ,
superpathway of lipoxygenase ,
superpathway of lysine degradation ,
superpathway of lysine, threonine and methionine biosynthesis II ,
superpathway of NAD biosynthesis in eukaryotes ,
superpathway of phenylalanine and tyrosine biosynthesis ,
superpathway of phosphatidylcholine biosynthesis ,
superpathway of phylloquinol biosynthesis ,
superpathway of plastoquinol biosynthesis ,
superpathway of polyamine biosynthesis II ,
superpathway of purine nucleotide salvage ,
superpathway of purine nucleotides de novo biosynthesis I ,
superpathway of purines degradation in plants ,
superpathway of pyrimidine deoxyribonucleoside salvage ,
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis ,
superpathway of pyrimidine nucleobases salvage ,
superpathway of pyrimidine ribonucleosides salvage ,
superpathway of pyrimidine ribonucleotides de novo biosynthesis ,
superpathway of seleno-compound metabolism ,
superpathway of serine and glycine biosynthesis I ,
superpathway of sialic acids and CMP-sialic acids biosynthesis ,
superpathway of tetrahydrofolate biosynthesis ,
superpathway of thiamin diphosphate biosynthesis III (eukaryotes) ,
superpathway phosphatidate biosynthesis (yeast) ,
t-anethole biosynthesis ,
taxadiene biosynthesis (engineered) ,
TCA cycle II (plants and fungi) ,
terminal O-glycans residues modification ,
terminal olefins biosynthesis I ,
terminal olefins biosynthesis II ,
tetrahydrofolate biosynthesis ,
tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate ,
thiamin diphosphate biosynthesis IV (eukaryotes) ,
thiamin triphosphate metabolism ,
thiazole biosynthesis III (eukaryotes) ,
thio-molybdenum cofactor biosynthesis ,
thioredoxin pathway ,
thiosulfate disproportionation III (rhodanese) ,
threonine biosynthesis ,
threonine biosynthesis from homoserine ,
thymine degradation ,
trans-cinnamoyl-CoA biosynthesis ,
trans-lycopene biosynthesis II (plants) ,
trans, trans-farnesyl diphosphate biosynthesis ,
trans-zeatin biosynthesis ,
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis ,
triacylglycerol biosynthesis ,
triacylglycerol degradation ,
trichloroethylene degradation ,
tRNA charging ,
tRNA methylation (yeast) ,
tRNA splicing ,
tryptophan biosynthesis ,
tryptophan degradation VI (via tryptamine) ,
tuberonate glucoside biosynthesis ,
tyrosine biosynthesis I ,
tyrosine biosynthesis II ,
tyrosine biosynthesis III ,
ubiquinol-10 biosynthesis (eukaryotic) ,
ubiquinol-9 biosynthesis (eukaryotic) ,
UDP-α-D-glucuronate biosynthesis (from myo-inositol) ,
UDP-α-D-glucuronate biosynthesis (from UDP-glucose) ,
UDP-D-apiose biosynthesis (from UDP-D-glucuronate) ,
UDP-D-galactose biosynthesis ,
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) ,
UDP-D-galacturonate biosynthesis II (from D-galacturonate) ,
UDP-D-xylose biosynthesis ,
UDP-glucose biosynthesis ,
UDP-L-arabinose biosynthesis I (from UDP-xylose) ,
UDP-L-arabinose biosynthesis II (from L-arabinose) ,
UDP-L-rhamnose biosynthesis ,
UDP-N-acetyl-D-glucosamine biosynthesis II ,
UDP-sugars interconversion ,
umbelliferone biosynthesis ,
UMP biosynthesis ,
unsaturated, even numbered fatty acid β-oxidation ,
uracil degradation I (reductive) ,
urate degradation to allantoin I ,
urea cycle ,
urea degradation II ,
UTP and CTP de novo biosynthesis ,
UTP and CTP dephosphorylation I ,
UTP and CTP dephosphorylation II ,
valencene and 7-epi-α-selinene biosynthesis ,
valine biosynthesis ,
valine degradation I ,
vernolate biosynthesis ,
very long chain fatty acid biosynthesis I ,
very long chain fatty acid biosynthesis II ,
vestitol and sativan biosynthesis ,
vitamin E biosynthesis (tocopherols) ,
vitexin and derivatives biosynthesis ,
volatile esters biosynthesis (during fruit ripening) ,
VTC2 cycle ,
wax esters biosynthesis II ,
wogonin metabolism ,
wound-induced proteolysis I ,
wybutosine biosynthesis ,
xanthine and xanthosine salvage ,
xylan biosynthesis ,
xylogalacturonan biosynthesis ,
xyloglucan biosynthesis ,
zealexin biosynthesis ,
zeaxanthin, antheraxanthin and violaxanthin interconversion ,
zeaxanthin biosynthesis


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Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Fri Nov 21, 2014, BIOCYC14A.