Metabolic Modeling Tutorial
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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MetaCyc Taxon: Rhizobiales

Synonyms: rhizobacteria, alpha-2 proteobacteria <1>, alpha-2 proteobacteria, Rhizobiaceae group, Hyphomicrobiales

Rank: order

Taxonomic lineage: cellular organisms , Bacteria , Proteobacteria , Alphaproteobacteria

Direct sub-taxa of Rhizobiales: Aurantimonadaceae , Bartonellaceae, Beijerinckiaceae , Bradyrhizobiaceae , Brucellaceae , Cohaesibacteraceae, environmental samples , Hyphomicrobiaceae , Methylobacteriaceae , Methylocystaceae , Phyllobacteriaceae , Rhizobiaceae , Rhodobiaceae , unclassified Rhizobiales , Xanthobacteraceae

Unification Links: NCBI-Taxonomy:356


Pathways present in Rhizobiales or one of its sub-taxa (142).
These pathways were observed experimentally in this taxon or one of its sub-taxa:
1,2-dichloroethane degradation ,
1,4-dichlorobenzene degradation ,
1,5-anhydrofructose degradation ,
2,4-dichlorophenoxyacetate degradation ,
2-aminoethylphosphonate degradation II ,
3,5-dichlorocatechol degradation ,
3-chlorocatechol degradation I (ortho) ,
4-chloro-2-methylphenoxyacetate degradation ,
4-coumarate degradation (anaerobic) ,
4-sulfocatechol degradation ,
5,6-dimethylbenzimidazole biosynthesis ,
5-nitroanthranilate degradation ,
acetone degradation II (to acetoacetate) ,
adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II ,
adenosylcobalamin biosynthesis II (late cobalt incorporation) ,
all-trans-decaprenyl diphosphate biosynthesis ,
anthranilate degradation I (aerobic) ,
arginine degradation I (arginase pathway) ,
arginine degradation VII (arginase 3 pathway) ,
astaxanthin biosynthesis ,
atrazine degradation I (aerobic) ,
autoinducer AI-1 biosynthesis ,
benzoate degradation II (aerobic and anaerobic) ,
benzoyl-CoA degradation III (anaerobic) ,
biotin biosynthesis from 8-amino-7-oxononanoate I ,
catechol degradation III (ortho-cleavage pathway) ,
chlorobenzene degradation ,
chlorophyllide a biosynthesis II (anaerobic) ,
choline degradation I ,
choline-O-sulfate degradation ,
cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation) ,
coenzyme M biosynthesis I ,
cyclohexane-1-carboxylate degradation (anaerobic) ,
cyclohexanol degradation ,
D-carnitine degradation I ,
demethylmenaquinol-9 biosynthesis ,
D-galactarate degradation II ,
D-galacturonate degradation II ,
D-glucarate degradation II ,
D-glucuronate degradation II ,
dimethyl sulfide degradation I ,
dimethyl sulfone degradation ,
dimethylsulfoniopropionate degradation I (cleavage) ,
dimethylsulfoniopropionate degradation II (cleavage) ,
dimethyl sulfoxide degradation ,
ethylmalonyl pathway ,
folate transformations I ,
formaldehyde assimilation I (serine pathway) ,
formaldehyde oxidation V (H4MPT pathway) ,
formate oxidation to CO2 ,
formate reduction to 5,10-methylenetetrahydrofolate ,
galactose degradation II ,
γ-butyrobetaine degradation ,
GDP-D-perosamine biosynthesis ,
glutaryl-CoA degradation ,
glycine betaine degradation I ,
heme biosynthesis I (aerobic) ,
heme biosynthesis II (anaerobic) ,
homocysteine biosynthesis ,
hopanoid biosynthesis (bacteria) ,
hydrogen oxidation I (aerobic) ,
indole-3-acetate biosynthesis III (bacteria) ,
indole-3-acetate biosynthesis IV (bacteria) ,
indole-3-acetate degradation VIII (bacterial) ,
lactose degradation II ,
lactose degradation III ,
L-arabinose degradation III ,
L-carnitine degradation II ,
L-dopachrome biosynthesis ,
L-rhamnose degradation I ,
lysine degradation VIII ,
manganese oxidation I ,
manganese oxidation II ,
mannosylfructose biosynthesis ,
menaquinol-9 biosynthesis ,
methane oxidation to methanol I ,
methane oxidation to methanol II ,
methanesulfonate degradation ,
methanol and methylamine oxidation to formaldehyde ,
methanol oxidation to formaldehyde I ,
methylamine degradation I ,
methylamine degradation II ,
methylerythritol phosphate pathway I ,
myo-inositol degradation I ,
N-acetylglutaminylglutamine amide biosynthesis ,
nicotine degradation V ,
nitrilotriacetate degradation ,
nitrite oxidation ,
nitrogen fixation ,
nitroglycerin degradation ,
nonaprenyl diphosphate biosynthesis I ,
nopaline degradation ,
octopine degradation ,
ornithine degradation I (proline biosynthesis) ,
ornithine lipid biosynthesis ,
oxalate degradation III ,
petrobactin biosynthesis ,
phosphatidylcholine biosynthesis V ,
phosphatidylcholine biosynthesis VI ,
phosphonoacetate degradation ,
proline degradation ,
propylene degradation ,
pseudouridine degradation ,
rhizobactin 1021 biosynthesis ,
stachydrine degradation ,
sucrose degradation VII (sucrose 3-dehydrogenase) ,
sulfate reduction III (assimilatory) ,
sulfide oxidation III (sulfur dioxygenase) ,
sulfite oxidation I (sulfite oxidoreductase) ,
sulfoacetaldehyde degradation II ,
sulfur oxidation I (aerobic) ,
superpathway of C1 compounds oxidation to CO2 ,
superpathway of demethylmenaquinol-9 biosynthesis ,
superpathway of dimethylsulfone degradation ,
superpathway of heme biosynthesis from glycine ,
superpathway of lysine degradation ,
superpathway of menaquinol-9 biosynthesis ,
superpathway of microbial D-galacturonate and D-glucuronate degradation ,
superpathway of pentose and pentitol degradation ,
superpathway of sulfide oxidation (Starkeya novella) ,
superpathway of trimethylamine degradation ,
tetrahydromethanopterin biosynthesis ,
tetrathionate oxidation ,
tetrathionate reduction I (to thiosulfate) ,
thiamin salvage II ,
thiosulfate disproportionation III (rhodanese) ,
thiosulfate oxidation III (multienzyme complex) ,
thiosulfate oxidation I (to tetrathionate) ,
trehalose biosynthesis I ,
trehalose biosynthesis V ,
trehalose degradation IV ,
trimethylamine degradation ,
tryptophan degradation I (via anthranilate) ,
tryptophan degradation VII (via indole-3-pyruvate) ,
tryptophan degradation VI (via tryptamine) ,
tryptophan degradation V (side chain pathway) ,
ubiquinol-10 biosynthesis (prokaryotic) ,
UDP-D-xylose biosynthesis ,
UDP-L-arabinose biosynthesis I (from UDP-xylose) ,
UDP-N-acetyl-α-D-quinovosamine biosynthesis ,
urea degradation II ,
vitamin B6 degradation

Additional pathways which may be present in Rhizobiales and all its sub-taxa (1144)
These pathways were inferred using their expected taxonomic range:
(+)-camphor degradation ,
1,2,4,5-tetrachlorobenzene degradation ,
1,2,4-trichlorobenzene degradation ,
1,2-dichlorobenzene degradation ,
1,2-propanediol biosynthesis from lactate (engineered) ,
(1,3)-β-D-xylan degradation ,
1,3-dichlorobenzene degradation ,
1,3-propanediol biosynthesis (engineered) ,
(1,4)-β-xylan degradation ,
1,4-dihydroxy-2-naphthoate biosynthesis I ,
1,4-dihydroxy-6-naphthoate biosynthesis I ,
1,4-dihydroxy-6-naphthoate biosynthesis II ,
1,8-cineole degradation ,
2,2'-dihydroxybiphenyl degradation ,
2,3-dihydroxybenzoate biosynthesis ,
2,3-dihydroxybenzoate degradation ,
2,3-dihydroxypropane-1-sulfonate degradation ,
2,4,5-trichlorophenoxyacetate degradation ,
2,4,6-trichlorophenol degradation ,
2,4-dichlorotoluene degradation ,
2,4-dinitrotoluene degradation ,
2,5-dichlorotoluene degradation ,
2,6-dinitrotoluene degradation ,
2-amino-3-carboxymuconate semialdehyde degradation to 2-oxopentenoate ,
2-aminoethylphosphonate degradation I ,
2-aminoethylphosphonate degradation III ,
2-aminophenol degradation ,
2-chloroacrylate degradation I ,
2-chloroacrylate degradation II ,
2-chlorobenzoate degradation ,
2'-deoxy-α-D-ribose 1-phosphate degradation ,
[2Fe-2S] iron-sulfur cluster biosynthesis ,
2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis ,
2-hydroxybiphenyl degradation ,
2-hydroxyphenazine biosynthesis ,
2-isopropylphenol degradation ,
2-keto-L-gulonate biosynthesis ,
2-methylcitrate cycle I ,
2-methylcitrate cycle II ,
2-nitrobenzoate degradation I ,
2-nitrobenzoate degradation II ,
2-nitrophenol degradation ,
2-nitrotoluene degradation ,
2-O-α-mannosyl-D-glycerate degradation ,
2-oxobutanoate degradation I ,
2-oxoglutarate decarboxylation to succinyl-CoA ,
2-oxoisovalerate decarboxylation to isobutanoyl-CoA ,
2-oxopentenoate degradation ,
2-propylphenol degradation ,
3,3'-dithiodipropionate degradation ,
3,3'-thiodipropionate degradation ,
3,4,6-trichlorocatechol degradation ,
3,4-dichlorobenzoate degradation ,
3,4-dichlorotoluene degradation ,
3-(4-sulfophenyl)butyrate degradation ,
3,5,6-trichloro-2-pyridinol degradation ,
3-chlorobenzoate degradation III (via gentisate) ,
3-chlorobenzoate degradation II (via protocatechuate) ,
3-chlorobenzoate degradation I (via chlorocatechol) ,
3-chlorocatechol degradation III (meta pathway) ,
3-chlorocatechol degradation II (ortho) ,
3-chlorotoluene degradation I ,
3-chlorotoluene degradation II ,
3-dehydroquinate biosynthesis I ,
3-methylarginine biosynthesis ,
3-methylbutanol biosynthesis ,
3-methylquinoline degradation ,
3-methylthiopropanoate biosynthesis ,
3-oxoadipate degradation ,
3-phenylpropanoate and 3-(3-hydroxyphenyl)propanoate degradation to 2-oxopent-4-enoate ,
3-phenylpropionate and 3-(3-hydroxyphenyl)propionate degradation ,
3-phenylpropionate degradation ,
4,4'-diapolycopenedioate biosynthesis ,
4,5-dichlorocatechol degradation ,
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis ,
4-amino-3-hydroxybenzoate degradation ,
4-aminobenzoate biosynthesis ,
4-aminobutyrate degradation ,
4-aminobutyrate degradation II ,
4-aminobutyrate degradation III ,
4-aminophenol degradation ,
4-chlorobenzoate degradation ,
4-chlorocatechol degradation ,
4-chloronitrobenzene degradation ,
4-ethylphenol degradation (anaerobic) ,
4-hydroxy-2(1H)-quinolone biosynthesis ,
4-hydroxyacetophenone degradation ,
4-hydroxybenzoate biosynthesis II (microbes) ,
4-hydroxymandelate degradation ,
4-hydroxyphenylacetate degradation ,
4-hydroxyphenylpyruvate biosynthesis ,
4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) ,
4-methylcatechol degradation (ortho cleavage) ,
4-nitrobenzoate degradation ,
4-nitrophenol degradation I ,
4-nitrophenol degradation II ,
4-nitrotoluene degradation I ,
4-nitrotoluene degradation II ,
(4R)-carveol and (4R)-dihydrocarveol degradation ,
(4S)-carveol and (4S)-dihydrocarveol degradation ,
4-toluenecarboxylate degradation ,
4-toluenesulfonate degradation I ,
4-toluenesulfonate degradation II ,
5,5'-dehydrodivanillate degradation ,
5-aminoimidazole ribonucleotide biosynthesis I ,
5-aminoimidazole ribonucleotide biosynthesis II ,
5-(carboxymethoxy)uridine biosynthesis ,
5-chloro-3-methyl-catechol degradation ,
5-dehydro-4-deoxy-D-glucuronate degradation ,
5-hydroxymethylfurfural degradation ,
(5R)-carbapenem carboxylate biosynthesis ,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I ,
8-amino-7-oxononanoate biosynthesis I ,
8-amino-7-oxononanoate biosynthesis II ,
8-amino-7-oxononanoate biosynthesis III ,
acetan biosynthesis ,
acetate conversion to acetyl-CoA ,
acetate formation from acetyl-CoA I ,
acetate formation from acetyl-CoA II ,
acetoacetate degradation (to acetyl CoA) ,
acetoin biosynthesis III ,
acetoin degradation ,
acetylene degradation ,
achromobactin biosynthesis ,
acrylate degradation ,
acrylonitrile degradation I ,
acrylonitrile degradation II ,
acyl-ACP thioesterase pathway ,
acyl carrier protein metabolism I ,
acyl-CoA hydrolysis ,
adamantanone degradation ,
adenine and adenosine salvage I ,
adenine and adenosine salvage II ,
adenine and adenosine salvage II ,
adenine and adenosine salvage III ,
adenine and adenosine salvage IV ,
adenine and adenosine salvage V ,
adenosine 5'-phosphoramidate biosynthesis ,
adenosine deoxyribonucleotides de novo biosynthesis ,
adenosine deoxyribonucleotides de novo biosynthesis II ,
adenosine nucleotides degradation II ,
adenosine nucleotides degradation III ,
adenosine ribonucleotides de novo biosynthesis ,
adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I ,
adenosylcobalamin biosynthesis I (early cobalt insertion) ,
adenosylcobalamin salvage from cobalamin ,
adenosylcobalamin salvage from cobinamide I ,
adenosylcobalamin salvage from cobinamide II ,
ADP-L-glycero-β-D-manno-heptose biosynthesis ,
aerobactin biosynthesis ,
aerobic respiration I (cytochrome c) ,
aerobic respiration III (alternative oxidase pathway) ,
agarose degradation ,
alanine biosynthesis I ,
alanine biosynthesis II ,
alanine biosynthesis III ,
alanine degradation I ,
alanine degradation IV ,
aldoxime degradation ,
alginate biosynthesis I ,
alginate biosynthesis II ,
alginate degradation ,
allantoin degradation IV (anaerobic) ,
allantoin degradation to glyoxylate I ,
allantoin degradation to glyoxylate III ,
allantoin degradation to ureidoglycolate II (ammonia producing) ,
allantoin degradation to ureidoglycolate I (urea producing) ,
all trans undecaprenyl diphosphate biosynthesis ,
aminopropanol phosphate biosynthesis I ,
aminopropanol phosphate biosynthesis II ,
aminopropylcadaverine biosynthesis ,
ammonia assimilation cycle III ,
ammonia oxidation I (aerobic) ,
ammonia oxidation III ,
anaerobic aromatic compound degradation (Thauera aromatica) ,
androstenedione degradation ,
anhydromuropeptides recycling ,
aniline degradation ,
anthranilate degradation II (aerobic) ,
anthranilate degradation III (anaerobic) ,
anthranilate degradation IV (aerobic) ,
arginine biosynthesis II (acetyl cycle) ,
arginine biosynthesis III (via N-acetyl-L-citrulline) ,
arginine biosynthesis IV (archaebacteria) ,
arginine biosynthesis I (via L-ornithine) ,
arginine degradation II (AST pathway) ,
arginine degradation III (arginine decarboxylase/agmatinase pathway) ,
arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway) ,
arginine degradation IX (arginine:pyruvate transaminase pathway) ,
arginine degradation V (arginine deiminase pathway) ,
arginine degradation VIII (arginine oxidase pathway) ,
arginine dependent acid resistance ,
aromatic biogenic amine degradation (bacteria) ,
aromatic compounds degradation via β-ketoadipate ,
arsenate detoxification II (glutaredoxin) ,
arsenate detoxification III (mycothiol) ,
arsenate reduction (respiratory) ,
arsenite oxidation II (respiratory) ,
arsenite oxidation I (respiratory) ,
arsonoacetate degradation ,
asparagine biosynthesis I ,
asparagine biosynthesis II ,
asparagine biosynthesis III (tRNA-dependent) ,
asparagine degradation I ,
aspartate biosynthesis ,
aspartate degradation I ,
aspartate superpathway ,
atrazine degradation II ,
aurachin A, B, C and D biosynthesis ,
aurachin RE biosynthesis ,
autoinducer AI-2 biosynthesis I ,
bacillithiol biosynthesis ,
bacteriochlorophyll a biosynthesis ,
base-degraded thiamin salvage ,
benzene degradation ,
benzenesulfonate degradation ,
benzoate degradation I (aerobic) ,
benzoate fermentation (to acetate and cyclohexane carboxylate) ,
benzoyl-CoA biosynthesis ,
benzoyl-CoA degradation I (aerobic) ,
benzoyl-CoA degradation II (anaerobic) ,
β-alanine biosynthesis II ,
β-alanine biosynthesis III ,
β-alanine degradation II ,
β-carotene biosynthesis ,
β-carotene biosynthesis (engineered) ,
β-D-glucuronide and D-glucuronate degradation ,
β myrcene degradation ,
biotin biosynthesis I ,
biotin biosynthesis II ,
biotin-carboxyl carrier protein assembly ,
biphenyl degradation ,
bisabolene biosynthesis ,
bisucaberin biosynthesis ,
butanol and isobutanol biosynthesis (engineered) ,
butirosin biosynthesis ,
caffeine degradation III (bacteria, via demethylation) ,
caffeine degradation IV (bacteria, via demethylation and oxidation) ,
caffeine degradation V (bacteria, via trimethylurate) ,
Calvin-Benson-Bassham cycle ,
(-)-camphor degradation ,
carbazole degradation ,
carbon disulfide oxidation I (anaerobic) ,
carbon disulfide oxidation II (aerobic) ,
carbon tetrachloride degradation I ,
carbon tetrachloride degradation II ,
cardiolipin and phosphatidylethanolamine biosynthesis (Xanthomonas) ,
cardiolipin biosynthesis I ,
catechol degradation II (meta-cleavage pathway) ,
catechol degradation I (meta-cleavage pathway) ,
catechol degradation to 2-oxopent-4-enoate I ,
catechol degradation to 2-oxopent-4-enoate II ,
catechol degradation to β-ketoadipate ,
CDP-2-glycerol biosynthesis ,
CDP-D-arabitol biosynthesis ,
CDP-diacylglycerol biosynthesis I ,
CDP-diacylglycerol biosynthesis II ,
CDP-diacylglycerol biosynthesis III ,
CDP-D-mannitol biosynthesis ,
cellulose and hemicellulose degradation (cellulolosome) ,
cellulose biosynthesis ,
cellulose degradation I (cellulosome) ,
cephamycin C biosynthesis ,
chitin degradation II ,
chitobiose degradation ,
chlorate reduction ,
chlorinated phenols degradation ,
chlorogenic acid degradation ,
chlorophyllide a biosynthesis I (aerobic, light-dependent) ,
chlorophyllide a biosynthesis III (aerobic, light independent) ,
chlorosalicylate degradation ,
cholate degradation (bacteria, anaerobic) ,
cholesterol degradation to androstenedione I (cholesterol oxidase) ,
cholesterol degradation to androstenedione II (cholesterol dehydrogenase) ,
choline degradation III ,
chondroitin sulfate and dermatan sulfate degradation I (bacterial) ,
chorismate biosynthesis from 3-dehydroquinate ,
chorismate biosynthesis I ,
cinnamate and 3-hydroxycinnamate degradation to 2-oxopent-4-enoate ,
cis-calamenene related sesquiterpenoids biosynthesis ,
cis-dodecenoyl biosynthesis ,
cis-genanyl-CoA degradation ,
cis-vaccenate biosynthesis ,
citrate degradation ,
citrate lyase activation ,
citronellol degradation ,
citrulline degradation ,
CMP-2-keto-3-deoxy-D-glycero-D-galacto-nononate biosynthesis ,
CMP-KDO biosynthesis I ,
CMP-KDO biosynthesis II (from D-arabinose 5-phosphate) ,
CMP-legionaminate biosynthesis I ,
CMP-legionaminate biosynthesis II ,
CMP-N-acetyl-7-O-acetylneuraminate biosynthesis ,
CMP-N-acetylneuraminate biosynthesis II (bacteria) ,
CMP phosphorylation ,
CMP-pseudaminate biosynthesis ,
cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) ,
coenzyme A biosynthesis I ,
colanic acid building blocks biosynthesis ,
coniferin metabolism ,
conversion of succinate to propionate ,
costunolide biosynthesis ,
coumarins biosynthesis (engineered) ,
creatinine degradation I ,
creatinine degradation II ,
creatinine degradation III ,
crotonate fermentation (to acetate and cyclohexane carboxylate) ,
curcumin degradation ,
cyanate degradation ,
cyanide degradation ,
cyanophycin metabolism ,
cyanurate degradation ,
cyclopropane fatty acid (CFA) biosynthesis ,
cysteine biosynthesis/homocysteine degradation ,
cysteine biosynthesis I ,
cysteine biosynthesis III (mammalian) ,
cytidylyl molybdenum cofactor biosynthesis ,
daidzin and daidzein degradation ,
D-allose degradation ,
dammara-20,24-diene biosynthesis ,
D-arabinose degradation I ,
D-arabinose degradation II ,
D-arabitol degradation ,
D-arginine degradation ,
D-carnitine degradation II ,
deacetylcephalosporin C biosynthesis ,
deethylsimazine degradation ,
dehydrodiconiferyl alcohol degradation ,
demethylmenaquinol-6 biosynthesis I ,
demethylmenaquinol-6 biosynthesis II ,
demethylmenaquinol-8 biosynthesis I ,
demethylmenaquinol-8 biosynthesis II ,
demethylmenaquinol-8 biosynthesis III ,
D-fructuronate degradation ,
D-galactarate degradation I ,
D-galactonate degradation ,
D-galactosamine and N-acetyl-D-galactosamine degradation ,
D-galacturonate degradation I ,
D-glucarate degradation I ,
D-gluconate degradation ,
D-glucosaminate degradation ,
diacylglyceryl-N,N,N-trimethylhomoserine biosynthesis ,
dibenzofuran degradation ,
dibenzo-p-dioxin degradation ,
diethylphosphate degradation ,
dimethyl sulfide degradation III (oxidation) ,
dimethyl sulfide degradation II (oxidation) ,
dimethylsulfoniopropionate degradation III (demethylation) ,
di-myo-inositol phosphate biosynthesis ,
diphenylamine degradation ,
di-trans,poly-cis-undecaprenyl phosphate biosynthesis ,
D-mannose degradation ,
D-serine degradation ,
D-sorbitol degradation I ,
D-sorbitol degradation II ,
dTDP-3-acetamido-3,6-dideoxy-α-D-galactose biosynthesis ,
dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis ,
dTDP-6-deoxy-α-D-allose biosynthesis ,
dTDP-D-desosamine biosynthesis ,
dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis ,
dTDP-L-megosamine biosynthesis ,
dTDP-L-mycarose biosynthesis ,
dTDP-L-olivose biosynthesis ,
dTDP-L-rhamnose biosynthesis I ,
dTDP-N-acetylthomosamine biosynthesis ,
dTDP-N-acetylviosamine biosynthesis ,
ectoine biosynthesis ,
eicosapentaenoate biosynthesis IV (bacteria) ,
enterobacterial common antigen biosynthesis ,
enterobactin biosynthesis ,
Entner-Doudoroff pathway I ,
epoxysqualene biosynthesis ,
ergothioneine biosynthesis I (bacteria) ,
erythromycin A biosynthesis ,
erythromycin D biosynthesis ,
ethanedisulfonate degradation ,
ethanol degradation I ,
ethanol degradation II ,
ethylbenzene degradation (anaerobic) ,
ethylene biosynthesis III (microbes) ,
ethylene biosynthesis II (microbes) ,
ethylene biosynthesis IV ,
ethylene biosynthesis V (engineered) ,
ethylene glycol biosynthesis ,
ethylene glycol degradation ,
eumelanin biosynthesis ,
fatty acid activation ,
fatty acid β-oxidation I ,
fatty acid β-oxidation III (unsaturated, odd number) ,
fatty acid biosynthesis initiation I ,
fatty acid biosynthesis initiation II ,
fatty acid biosynthesis initiation III ,
fatty acid elongation -- saturated ,
fatty acid salvage ,
Fe(II) oxidation ,
ferulate degradation ,
flavin biosynthesis I (bacteria and plants) ,
flaviolin dimer and mompain biosynthesis ,
fluorene degradation II ,
fluoroacetate and fluorothreonine biosynthesis ,
fluoroacetate degradation ,
folate polyglutamylation ,
formaldehyde assimilation II (RuMP Cycle) ,
formaldehyde oxidation I ,
formaldehyde oxidation II (glutathione-dependent) ,
formaldehyde oxidation IV (thiol-independent) ,
formate to dimethyl sulfoxide electron transfer ,
formate to trimethylamine N-oxide electron transfer ,
fosfomycin biosynthesis ,
FR-900098 and FR-33289 antibiotics biosynthesis ,
fructan biosynthesis ,
fructose degradation ,
fructoselysine and psicoselysine degradation ,
fucose degradation ,
furfural degradation ,
galactitol degradation ,
galactose degradation I (Leloir pathway) ,
galena oxidation ,
gallate biosynthesis ,
gallate degradation I ,
gallate degradation II ,
γ-hexachlorocyclohexane degradation ,
GDP-6-deoxy-D-talose biosynthesis ,
GDP-D-glycero-α-D-manno-heptose biosynthesis ,
GDP-D-rhamnose biosynthesis ,
GDP-glucose biosynthesis ,
GDP-L-colitose biosynthesis ,
GDP-L-fucose biosynthesis I (from GDP-D-mannose) ,
GDP-mannose biosynthesis ,
gellan degradation ,
gentisate degradation I ,
gentisate degradation II ,
geranyl diphosphate biosynthesis ,
geranylgeranyl diphosphate biosynthesis ,
gibberellin inactivation I (2β-hydroxylation) ,
ginsenoside degradation II ,
gluconeogenesis I ,
glucose and glucose-1-phosphate degradation ,
glucose degradation (oxidative) ,
glucosylglycerate biosynthesis I ,
glucosylglycerate biosynthesis II ,
glucuronoarabinoxylan degradation ,
glutamate and glutamine biosynthesis ,
glutamate biosynthesis I ,
glutamate biosynthesis II ,
glutamate biosynthesis III ,
glutamate degradation I ,
glutamate degradation II ,
glutamate degradation VII (to butanoate) ,
glutamate degradation VI (to pyruvate) ,
glutamate degradation X ,
glutamate dependent acid resistance ,
glutamine biosynthesis I ,
glutamine degradation I ,
glutamine degradation II ,
glutathione amide metabolism ,
glutathione biosynthesis ,
glutathione redox reactions I ,
glutathione redox reactions II ,
glutathionylspermidine biosynthesis ,
glycerol and glycerophosphodiester degradation ,
glycerol degradation I ,
glycerol degradation II ,
glycerol degradation III ,
glycerol degradation to butanol ,
glycerol degradation V ,
glycerophosphodiester degradation ,
glycine betaine biosynthesis I (Gram-negative bacteria) ,
glycine betaine biosynthesis IV (from glycine) ,
glycine biosynthesis I ,
glycine biosynthesis III ,
glycine cleavage ,
glycocholate metabolism (bacteria) ,
glycogen biosynthesis I (from ADP-D-Glucose) ,
glycogen degradation I ,
glycogen degradation III ,
glycogenolysis II ,
glycolate and glyoxylate degradation I ,
glycolate and glyoxylate degradation II ,
glycolate and glyoxylate degradation III ,
glycolysis I (from glucose 6-phosphate) ,
glycolysis II (from fructose 6-phosphate) ,
glycolysis III (from glucose) ,
glyoxylate cycle ,
guaiacylglycerol-β-guaiacyl ether degradation ,
guanine and guanosine salvage ,
guanine and guanosine salvage II ,
guanine and guanosine salvage III ,
guanosine deoxyribonucleotides de novo biosynthesis I ,
guanosine deoxyribonucleotides de novo biosynthesis II ,
guanosine nucleotides degradation III ,
guanosine ribonucleotides de novo biosynthesis ,
guanylyl molybdenum cofactor biosynthesis ,
heme biosynthesis III (from siroheme) ,
heme d1 biosynthesis ,
hentriaconta-3,6,9,12,15,19,22,25,28-nonaene biosynthesis ,
heptadecane biosynthesis ,
heptaprenyl diphosphate biosynthesis ,
hexaprenyl diphosphate biosynthesis ,
histamine biosynthesis ,
histidine biosynthesis ,
histidine degradation I ,
histidine degradation II ,
histidine degradation IV ,
homolactic fermentation ,
homoserine and methionine biosynthesis ,
homoserine biosynthesis ,
homospermidine biosynthesis ,
homotaurine degradation ,
hydrogen oxidation II (aerobic, NAD) ,
hydrogen oxidation III (anaerobic, NADP) ,
hydrogen production I ,
hydrogen production II ,
hydrogen production III ,
hydrogen production V ,
hydrogen production VI ,
hydrogen sulfide biosynthesis I ,
hydroxymethylpyrimidine salvage ,
hypotaurine degradation ,
imidazole-lactate degradation ,
indigo biosynthesis ,
indole-3-acetate biosynthesis V (bacteria and fungi) ,
inosine-5'-phosphate biosynthesis I ,
intra-aerobic nitrite reduction ,
ι-carrageenan degradation ,
isethionate degradation ,
isoleucine biosynthesis I ,
isoleucine biosynthesis I (from threonine) ,
isoleucine biosynthesis III ,
isoleucine biosynthesis IV ,
isoleucine biosynthesis V ,
isoleucine degradation I ,
isopenicillin N biosynthesis ,
isoprene biosynthesis II (engineered) ,
isopropanol biosynthesis ,
isopropylamine degradation ,
itaconate degradation ,
kanosamine biosynthesis I ,
kanosamine biosynthesis II ,
κ-carrageenan degradation ,
(KDO)2-lipid A biosynthesis I ,
KDO transfer to lipid IVA I ,
ketogluconate metabolism ,
kojibiose degradation ,
L-1,2-propanediol degradation ,
lactate biosynthesis (archaea) ,
λ-carrageenan degradation ,
laminaribiose degradation ,
lanosterol biosynthesis ,
L-arabinan degradation ,
L-arabinose degradation I ,
L-ascorbate biosynthesis III ,
L-ascorbate biosynthesis VI (engineered pathway) ,
L-ascorbate degradation I (bacterial, anaerobic) ,
L-ascorbate degradation II (bacterial, aerobic) ,
L-carnitine degradation I ,
L-carnitine degradation III ,
L-cysteine biosynthesis V ,
L-cysteine degradation II ,
leucine biosynthesis ,
leucine degradation I ,
L-galactonate degradation ,
L-glucose degradation ,
L-glutamine biosynthesis II (tRNA-dependent) ,
L-homophenylalanine biosynthesis ,
L-idonate degradation ,
limonene degradation I (D-limonene) ,
limonene degradation III (to perillate) ,
limonene degradation II (L-limonene) ,
lincomycin biosynthesis ,
linezolid resistance ,
linuron degradation ,
Lipid A-core biosynthesis ,
lipid IVA biosynthesis ,
lipoate biosynthesis and incorporation I ,
lipoate biosynthesis and incorporation II ,
lipoate biosynthesis and incorporation III (Bacillus) ,
lipoate salvage I ,
lipoate salvage II ,
L-lactaldehyde degradation (aerobic) ,
L-lactaldehyde degradation (anaerobic) ,
L-lyxonate degradation ,
L-lyxose degradation ,
long chain fatty acid ester synthesis for microdiesel production ,
L-rhamnose degradation II ,
L-rhamnose degradation III ,
L-serine degradation ,
L-sorbose degradation ,
lysine biosynthesis I ,
lysine biosynthesis III ,
lysine biosynthesis V ,
lysine degradation I ,
lysine degradation IV ,
lysine degradation V ,
lysine degradation VI ,
lysine degradation X ,
lysine fermentation to acetate and butyrate ,
malonate decarboxylase activation ,
malonate degradation I (biotin-independent) ,
malonate degradation II (biotin-dependent) ,
maltose degradation ,
mandelate degradation I ,
mandelate degradation to acetyl-CoA ,
mannan degradation ,
mannitol degradation I ,
mannosylglucosylglycerate biosynthesis I ,
mannosylglucosylglycerate biosynthesis II ,
mannosylglycerate biosynthesis I ,
mannosylglycerate biosynthesis II ,
m-cresol degradation ,
megalomicin A biosynthesis ,
melamine degradation ,
melibiose degradation ,
menaquinol-6 biosynthesis ,
menaquinol-7 biosynthesis ,
menaquinol-8 biosynthesis ,
meso-butanediol biosynthesis I ,
meso-butanediol biosynthesis II ,
meta cleavage pathway of aromatic compounds ,
methanol oxidation to formaldehyde III ,
methionine biosynthesis I ,
methionine biosynthesis III ,
methionine degradation II ,
methionine degradation I (to homocysteine) ,
methionine salvage cycle I (bacteria and plants) ,
methylgallate degradation ,
methylglyoxal degradation I ,
methylglyoxal degradation II ,
methylglyoxal degradation III ,
methylglyoxal degradation IV ,
methylglyoxal degradation VII ,
methylhalides biosynthesis (plants) ,
methyl ketone biosynthesis ,
methyl parathion degradation ,
methylphosphonate degradation I ,
methylphosphonate degradation II ,
methylsalicylate degradation ,
methylthiolincosamide biosynthesis ,
methylthiopropionate degradation I (cleavage) ,
methylthiopropionate degradation II (demethylation) ,
mevalonate degradation ,
mevalonate pathway I ,
mithramycin biosynthesis ,
mixed acid fermentation ,
molybdenum cofactor biosynthesis ,
m-xylene degradation (anaerobic) ,
m-xylene degradation to m-toluate ,
mycocyclosin biosynthesis ,
myo-, chiro- and scillo-inositol degradation ,
myo-inositol biosynthesis ,
myo-inositol degradation II ,
N10-formyl-tetrahydrofolate biosynthesis ,
N-acetyl-D-galactosamine degradation ,
N-acetylglucosamine degradation I ,
N-acetylglucosamine degradation II ,
N-acetylneuraminate and N-acetylmannosamine degradation ,
NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde ,
NAD biosynthesis I (from aspartate) ,
NAD biosynthesis II (from tryptophan) ,
NAD biosynthesis III ,
NADH repair ,
NADH to cytochrome bd oxidase electron transfer I ,
NADH to cytochrome bo oxidase electron transfer I ,
NADH to dimethyl sulfoxide electron transfer ,
NADH to fumarate electron transfer ,
NADH to trimethylamine N-oxide electron transfer ,
NAD phosphorylation and dephosphorylation I ,
NAD salvage pathway I ,
NAD salvage pathway II ,
NAD salvage pathway III ,
naphthalene degradation (aerobic) ,
naphthalene degradation to acetyl-CoA ,
N-cyclopropylmelamine degradation ,
neomycin biosynthesis ,
neurosporene biosynthesis ,
nicotinate degradation I ,
nicotine degradation II ,
nitrate reduction I (denitrification) ,
nitrate reduction III (dissimilatory) ,
nitrate reduction IV (dissimilatory) ,
nitrate reduction V (assimilatory) ,
nitrate reduction VII (denitrification) ,
nitrate reduction VIII (dissimilatory) ,
nitrifier denitrification ,
nitrobenzene degradation I ,
nitrobenzene degradation II ,
nostoxanthin biosynthesis ,
nylon-6 oligomer degradation ,
O-antigen building blocks biosynthesis (E. coli) ,
octane oxidation ,
octaprenyl diphosphate biosynthesis ,
oleandomycin activation/inactivation ,
oleandomycin biosynthesis ,
oleate β-oxidation ,
orcinol degradation ,
ornithine biosynthesis ,
orthanilate degradation ,
oxalate degradation I ,
oxalate degradation II ,
oxalate degradation IV ,
oxalate degradation V ,
oxidized GTP and dGTP detoxification ,
palmitate biosynthesis II (bacteria and plants) ,
palmitoleate biosynthesis I ,
palmitoleate biosynthesis II ,
pantothenate and coenzyme A biosynthesis I ,
paraoxon degradation ,
parathion degradation ,
paromamine biosynthesis II ,
paromomycin biosynthesis ,
p-cumate degradation ,
p-cumate degradation to 2-oxopent-4-enoate ,
p-cymene degradation ,
p-cymene degradation to p-cumate ,
pectin degradation I ,
pectin degradation II ,
pectin degradation III ,
pentachlorophenol degradation ,
pentose phosphate pathway ,
pentose phosphate pathway (non-oxidative branch) ,
pentose phosphate pathway (oxidative branch) I ,
peptidoglycan biosynthesis I (meso-diaminopimelate containing) ,
perchlorate reduction ,
phenol degradation I (aerobic) ,
phenol degradation II (anaerobic) ,
phenylacetate degradation I (aerobic) ,
phenylacetate degradation II (anaerobic) ,
phenylalanine biosynthesis I ,
phenylalanine biosynthesis II ,
phenylalanine degradation I (aerobic) ,
phenylalanine degradation II (anaerobic) ,
phenylethanol biosynthesis ,
phenylethylamine degradation I ,
phenylethylamine degradation II ,
phenylmercury acetate degradation ,
phosphate acquisition ,
phosphatidylcholine biosynthesis I ,
phosphatidylcholine biosynthesis VII ,
phosphatidylcholine resynthesis via glycerophosphocholine ,
phosphatidylethanolamine biosynthesis I ,
phosphatidylglycerol biosynthesis II (non-plastidic) ,
phosphatidylglycerol biosynthesis I (plastidic) ,
phospholipases ,
phospholipid biosynthesis I ,
phosphopantothenate biosynthesis I ,
photosynthesis light reactions ,
photosynthetic 3-hydroxybutyrate biosynthesis (engineered) ,
phthalate degradation ,
plumbagin biosynthesis ,
polyhydroxybutyrate biosynthesis ,
polyhydroxydecanoate biosynthesis ,
polyisoprenoid biosynthesis (E. coli) ,
polymyxin resistance ,
polyvinyl alcohol degradation ,
porphyran degradation ,
ppGpp biosynthesis ,
preQ0 biosynthesis ,
prodigiosin biosynthesis ,
proline biosynthesis I ,
proline to cytochrome bo oxidase electron transfer ,
propionyl CoA degradation ,
protocatechuate degradation III (para-cleavage pathway) ,
protocatechuate degradation II (ortho-cleavage pathway) ,
protocatechuate degradation I (meta-cleavage pathway) ,
PRPP biosynthesis I ,
PRPP biosynthesis II ,
pulcherrimin biosynthesis ,
purine deoxyribonucleosides degradation I ,
purine deoxyribonucleosides salvage ,
purine nucleotides degradation II (aerobic) ,
purine ribonucleosides degradation ,
putrescine biosynthesis I ,
putrescine biosynthesis II ,
putrescine biosynthesis III ,
putrescine degradation I ,
putrescine degradation II ,
putrescine degradation V ,
p-xylene degradation to p-toluate ,
pyochelin biosynthesis ,
pyocyanin biosynthesis ,
pyridoxal 5'-phosphate biosynthesis I ,
pyridoxal 5'-phosphate biosynthesis II ,
pyridoxal 5'-phosphate salvage I ,
pyrimidine deoxyribonucleosides degradation ,
pyrimidine deoxyribonucleosides salvage ,
pyrimidine deoxyribonucleotide phosphorylation ,
pyrimidine deoxyribonucleotides de novo biosynthesis I ,
pyrimidine deoxyribonucleotides de novo biosynthesis II ,
pyrimidine deoxyribonucleotides de novo biosynthesis III ,
pyrimidine deoxyribonucleotides dephosphorylation ,
pyrimidine nucleobases salvage I ,
pyrimidine nucleobases salvage II ,
pyrimidine ribonucleosides degradation ,
pyrimidine ribonucleosides salvage I ,
pyrimidine ribonucleosides salvage II ,
pyrimidine ribonucleosides salvage III ,
pyrrolnitrin biosynthesis ,
pyrroloquinoline quinone biosynthesis ,
pyruvate decarboxylation to acetyl CoA ,
pyruvate fermentation to acetate and lactate I ,
pyruvate fermentation to acetate and lactate II ,
pyruvate fermentation to acetate I ,
pyruvate fermentation to acetate II ,
pyruvate fermentation to acetate IV ,
pyruvate fermentation to acetone ,
pyruvate fermentation to butanoate ,
pyruvate fermentation to butanol II ,
pyruvate fermentation to ethanol I ,
pyruvate fermentation to ethanol II ,
pyruvate fermentation to ethanol III ,
pyruvate fermentation to hexanol ,
pyruvate fermentation to isobutanol (engineered) ,
pyruvate fermentation to lactate ,
pyruvate fermentation to propionate I ,
pyruvate fermentation to propionate II (acrylate pathway) ,
pyruvate oxidation pathway ,
queuosine biosynthesis ,
quinate degradation I ,
(R)-acetoin biosynthesis I ,
(R)-acetoin biosynthesis II ,
(R)- and (S)-3-hydroxybutyrate biosynthesis ,
(R)-cysteate degradation ,
reductive acetyl coenzyme A pathway ,
reductive monocarboxylic acid cycle ,
reductive TCA cycle I ,
resorcinol degradation ,
rhamnogalacturonan type I degradation II (bacteria) ,
rhamnolipid biosynthesis ,
rhizocticin A and B biosynthesis ,
ribitol degradation ,
ribose degradation ,
ribostamycin biosynthesis ,
ricinine degradation ,
(R,R)-butanediol biosynthesis ,
(R,R)-butanediol degradation ,
(S)-acetoin biosynthesis ,
S-adenosyl-L-methionine biosynthesis ,
S-adenosyl-L-methionine cycle I ,
S-adenosyl-L-methionine cycle II ,
salicylate biosynthesis I ,
salicylate biosynthesis II ,
salicylate degradation I ,
salicylate degradation II ,
salicylate degradation IV ,
sciadonate biosynthesis ,
sedoheptulose bisphosphate bypass ,
selenate reduction ,
selenocysteine biosynthesis I (bacteria) ,
selinene biosynthesis ,
serine biosynthesis ,
serine racemization ,
shikimate degradation I ,
siroheme amide biosynthesis ,
siroheme biosynthesis ,
sitosterol degradation to androstenedione ,
S-methyl-5'-thioadenosine degradation I ,
S-methyl-5'-thioadenosine degradation II ,
S-methyl-5'-thioadenosine degradation III ,
S-methyl-5'-thioadenosine degradation IV ,
S-methyl-5-thio-α-D-ribose 1-phosphate degradation ,
S-methyl-5-thio-α-D-ribose 1-phosphate degradation II ,
sorbitol biosynthesis II ,
spermidine biosynthesis I ,
spermidine biosynthesis II ,
spermidine biosynthesis III ,
spermine biosynthesis ,
spheroidene and spheroidenone biosynthesis ,
sphingomyelin metabolism ,
spirilloxanthin and 2,2'-diketo-spirilloxanthin biosynthesis ,
(S,S)-butanediol biosynthesis ,
(S,S)-butanediol degradation ,
stearate biosynthesis I (animals) ,
stearate biosynthesis II (bacteria and plants) ,
styrene degradation ,
succinate to cytochrome bd oxidase electron transfer ,
succinate to cytochrome bo oxidase electron transfer ,
sucrose degradation I (sucrose phosphotransferase) ,
sulfate activation for sulfonation ,
sulfate reduction I (assimilatory) ,
sulfate reduction II (assimilatory) ,
sulfate reduction IV (dissimilatory) ,
sulfate reduction V (dissimilatory) ,
sulfide oxidation II (sulfide dehydrogenase) ,
sulfide oxidation I (sulfide-quinone reductase) ,
sulfite oxidation II ,
sulfite oxidation III ,
sulfite oxidation V (SoeABC) ,
sulfoacetaldehyde degradation I ,
sulfoacetaldehyde degradation III ,
sulfoacetate degradation ,
sulfoglycolysis ,
sulfolactate degradation I ,
sulfolactate degradation II ,
sulfolactate degradation III ,
sulfur disproportionation I (anaerobic) ,
sulfur oxidation II (Fe+3-dependent) ,
sulfur oxidation IV (intracellular sulfur) ,
sulfur reduction I ,
sulfur reduction II (via polysulfide) ,
superoxide radicals degradation ,
superpathay of heme biosynthesis from glutamate ,
superpathway of 2,3-butanediol biosynthesis ,
superpathway of 4-aminobutyrate degradation ,
superpathway of 5-aminoimidazole ribonucleotide biosynthesis ,
superpathway of acetate utilization and formation ,
superpathway of acrylonitrile degradation ,
superpathway of adenosine nucleotides de novo biosynthesis I ,
superpathway of adenosine nucleotides de novo biosynthesis II ,
superpathway of aerobic toluene degradation ,
superpathway of alanine biosynthesis ,
superpathway of alliin degradation ,
superpathway of arginine and ornithine degradation ,
superpathway of arginine and polyamine biosynthesis ,
superpathway of arginine, putrescine, and 4-aminobutyrate degradation ,
superpathway of aromatic compound degradation via 2-oxopent-4-enoate ,
superpathway of aromatic compound degradation via 3-oxoadipate ,
superpathway of asparagine biosynthesis ,
superpathway of aspartate and asparagine biosynthesis; interconversion of aspartate and asparagine ,
superpathway of atrazine degradation ,
superpathway of β-D-glucuronide and D-glucuronate degradation ,
superpathway of butirocin biosynthesis ,
superpathway of cholesterol degradation I (cholesterol oxidase) ,
superpathway of cholesterol degradation II (cholesterol dehydrogenase) ,
superpathway of chorismate metabolism ,
superpathway of demethylmenaquinol-6 biosynthesis II ,
superpathway of demethylmenaquinol-8 biosynthesis ,
superpathway of D-glucarate and D-galactarate degradation ,
superpathway of dimethylsulfoniopropionate degradation ,
superpathway of dTDP-glucose-derived O-antigen building blocks biosynthesis ,
superpathway of erythromycin biosynthesis ,
superpathway of erythromycin biosynthesis (without sugar biosynthesis) ,
superpathway of fatty acid biosynthesis initiation (E. coli) ,
superpathway of fatty acids biosynthesis (E. coli) ,
superpathway of fucose and rhamnose degradation ,
superpathway of GDP-mannose-derived O-antigen building blocks biosynthesis ,
superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) ,
superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) ,
superpathway of glucose and xylose degradation ,
superpathway of glycerol degradation to 1,3-propanediol ,
superpathway of glycol metabolism and degradation ,
superpathway of glycolysis and Entner-Doudoroff ,
superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass ,
superpathway of glyoxylate bypass and TCA ,
superpathway of guanosine nucleotides de novo biosynthesis I ,
superpathway of guanosine nucleotides de novo biosynthesis II ,
superpathway of heme biosynthesis from uroporphyrinogen-III ,
superpathway of hexitol degradation (bacteria) ,
superpathway of hexuronide and hexuronate degradation ,
superpathway of histidine, purine, and pyrimidine biosynthesis ,
superpathway of hydrogen production ,
superpathway of (KDO)2-lipid A biosynthesis ,
superpathway of leucine, valine, and isoleucine biosynthesis ,
superpathway of lipopolysaccharide biosynthesis ,
superpathway of lysine, threonine and methionine biosynthesis I ,
superpathway of megalomicin A biosynthesis ,
superpathway of menaquinol-6 biosynthesis I ,
superpathway of menaquinol-7 biosynthesis ,
superpathway of menaquinol-8 biosynthesis I ,
superpathway of menaquinol-8 biosynthesis II ,
superpathway of methionine biosynthesis (by sulfhydrylation) ,
superpathway of methionine biosynthesis (transsulfuration) ,
superpathway of methylglyoxal degradation ,
superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation ,
superpathway of N-acetylneuraminate degradation ,
superpathway of neomycin biosynthesis ,
superpathway of nicotinate degradation ,
superpathway of ornithine degradation ,
superpathway of penicillin, cephalosporin and cephamycin biosynthesis ,
superpathway of phenylalanine biosynthesis ,
superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis ,
superpathway of phenylethylamine degradation ,
superpathway of polyamine biosynthesis I ,
superpathway of polyamine biosynthesis II ,
superpathway of purine deoxyribonucleosides degradation ,
superpathway of purine nucleotides de novo biosynthesis I ,
superpathway of purine nucleotides de novo biosynthesis II ,
superpathway of pyridoxal 5'-phosphate biosynthesis and salvage ,
superpathway of pyrimidine deoxyribonucleoside salvage ,
superpathway of pyrimidine deoxyribonucleosides degradation ,
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis ,
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) ,
superpathway of pyrimidine nucleobases salvage ,
superpathway of pyrimidine ribonucleosides degradation ,
superpathway of pyrimidine ribonucleosides salvage ,
superpathway of pyrimidine ribonucleotides de novo biosynthesis ,
superpathway of quinolone and alkylquinolone biosynthesis ,
superpathway of (R,R)-butanediol biosynthesis ,
superpathway of S-adenosyl-L-methionine biosynthesis ,
superpathway of salicylate degradation ,
superpathway of seleno-compound metabolism ,
superpathway of serine and glycine biosynthesis I ,
superpathway of sialic acids and CMP-sialic acids biosynthesis ,
superpathway of sulfate assimilation and cysteine biosynthesis ,
superpathway of sulfide oxidation (Acidithiobacillus ferrooxidans) ,
superpathway of sulfolactate degradation ,
superpathway of sulfur metabolism (Desulfocapsa sulfoexigens) ,
superpathway of taurine degradation ,
superpathway of testosterone and androsterone degradation ,
superpathway of tetrahydrofolate biosynthesis ,
superpathway of tetrahydrofolate biosynthesis and salvage ,
superpathway of tetrathionate reduction (Salmonella typhimurium) ,
superpathway of thiamin diphosphate biosynthesis I ,
superpathway of thiamin diphosphate biosynthesis II ,
superpathway of thiosulfate metabolism (Desulfovibrio sulfodismutans) ,
superpathway of threonine metabolism ,
superpathway of tryptophan biosynthesis ,
superpathway of tyrosine biosynthesis ,
superpathway of ubiquinol-8 biosynthesis (prokaryotic) ,
superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis ,
superpathway of UDP-N-acetylglucosamine-derived O-antigen building blocks biosynthesis ,
superpathway of unsaturated fatty acids biosynthesis (E. coli) ,
superpathway of vanillin and vanillate degradation ,
syringate degradation ,
taurine biosynthesis ,
taurine degradation I ,
taurine degradation II ,
taurine degradation III ,
taurine degradation IV ,
taxadiene biosynthesis (engineered) ,
TCA cycle I (prokaryotic) ,
TCA cycle IV (2-oxoglutarate decarboxylase) ,
TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) ,
TCA cycle VII (acetate-producers) ,
TCA cycle VIII (helicobacter) ,
TCA cycle VI (obligate autotrophs) ,
terminal olefins biosynthesis I ,
terminal olefins biosynthesis II ,
testosterone and androsterone degradation to androstendione ,
tetrachloroethene degradation ,
tetrahydrofolate biosynthesis ,
tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate ,
tetrahydromonapterin biosynthesis ,
tetramethylpyrazine degradation ,
tetrapyrrole biosynthesis I (from glutamate) ,
tetrapyrrole biosynthesis II (from glycine) ,
tetrathionate reductiuon II (to trithionate) ,
theophylline degradation ,
thiamin diphosphate biosynthesis I (E. coli) ,
thiamin diphosphate biosynthesis II (Bacillus) ,
thiamin diphosphate biosynthesis III (Staphylococcus) ,
thiamin salvage III ,
thiamin salvage IV (yeast) ,
thiamin triphosphate metabolism ,
thiazole biosynthesis I (E. coli) ,
thiazole biosynthesis II (Bacillus) ,
thiocyanate degradation I ,
thiocyanate degradation II ,
thio-molybdenum cofactor biosynthesis ,
thioredoxin pathway ,
thiosulfate disproportionation II (non thiol-dependent) ,
thiosulfate disproportionation I (thiol-dependent) ,
thiosulfate oxidation II (to tetrathionate) ,
threonine biosynthesis ,
threonine biosynthesis from homoserine ,
threonine degradation I ,
threonine degradation II ,
threonine degradation III (to methylglyoxal) ,
threonine degradation IV ,
thymine degradation ,
toluene degradation I (aerobic) (via o-cresol) ,
toluene degradation II (aerobic) (via 4-methylcatechol) ,
toluene degradation III (aerobic) (via p-cresol) ,
toluene degradation IV (aerobic) (via catechol) ,
toluene degradation to 2-oxopent-4-enoate I (via o-cresol) ,
toluene degradation to 2-oxopent-4-enoate (via 4-methylcatechol) ,
toluene degradation to 2-oxopent-4-enoate (via toluene-cis-diol) ,
toluene degradation to benzoate ,
toluene degradation to benzoyl-CoA (anaerobic) ,
toluene degradation to protocatechuate (via p-cresol) ,
toluene degradation V (aerobic) (via toluene-cis-diol) ,
toluene degradation VI (anaerobic) ,
trans-3-hydroxy-L-proline degradation ,
trans-4-hydroxy-L-proline degradation II ,
trans-cinnamoyl-CoA biosynthesis ,
trans-lycopene biosynthesis I (bacteria) ,
trans, trans-farnesyl diphosphate biosynthesis ,
trehalose biosynthesis IV ,
trehalose degradation II (trehalase) ,
trehalose degradation I (low osmolarity) ,
trehalose degradation VI (periplasmic) ,
triacylglycerol degradation ,
triclosan resistance ,
triethylamine degradation ,
tRNA charging ,
tRNA processing ,
tryptophan biosynthesis ,
tryptophan degradation II (via pyruvate) ,
tryptophan degradation IX ,
tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde ,
tryptophan degradation XII (Geobacillus) ,
two-component alkanesulfonate monooxygenase ,
tyrosine biosynthesis I ,
tyrosine biosynthesis II ,
tyrosine biosynthesis III ,
tyrosine degradation I ,
ubiquinol-7 biosynthesis (prokaryotic) ,
ubiquinol-8 biosynthesis (prokaryotic) ,
ubiquinol-9 biosynthesis (prokaryotic) ,
UDP-2,3-diacetamido-2,3-dideoxy-α-D-mannuronate biosynthesis ,
UDP-α-D-glucuronate biosynthesis (from UDP-glucose) ,
UDP-D-galactose biosynthesis ,
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) ,
UDP-D-galacturonate biosynthesis II (from D-galacturonate) ,
UDP-glucose biosynthesis ,
UDP-N-acetyl-α-D-fucosamine biosynthesis ,
UDP-N-acetyl-α-D-galactosaminuronate biosynthesis ,
UDP-N-acetyl-α-D-mannosaminouronate biosynthesis ,
UDP-N-acetyl-β-L-fucosamine biosynthesis ,
UDP-N-acetyl-β-L-quinovosamine biosynthesis ,
UDP-N-acetyl-D-galactosamine biosynthesis I ,
UDP-N-acetyl-D-glucosamine biosynthesis I ,
UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-DAP-containing) ,
UDP-N,N'-diacetylbacillosamine biosynthesis ,
UMP biosynthesis ,
uracil degradation III ,
uracil degradation II (oxidative) ,
uracil degradation I (reductive) ,
urate biosynthesis/inosine 5'-phosphate degradation ,
urate degradation to allantoin I ,
urate degradation to allantoin II ,
urea cycle ,
urea degradation I ,
UTP and CTP de novo biosynthesis ,
UTP and CTP dephosphorylation I ,
UTP and CTP dephosphorylation II ,
valencene and 7-epi-α-selinene biosynthesis ,
valine biosynthesis ,
valine degradation I ,
valine degradation II ,
vancomycin resistance I ,
vancomycin resistance II ,
vanillin and vanillate degradation I ,
vanillin and vanillate degradation II ,
very long chain fatty acid biosynthesis I ,
very long chain fatty acid biosynthesis II ,
violacein biosynthesis ,
wax esters biosynthesis II ,
xanthan biosynthesis ,
xanthine and xanthosine salvage ,
xylitol degradation ,
xylose degradation I ,
xylose degradation III ,
zeaxanthin-β-D-diglucoside biosynthesis ,
zeaxanthin biosynthesis


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Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Wed Nov 26, 2014, biocyc13.