Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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MetaCyc Taxon: Fabaceae

Synonyms: pea family, Leguminosae

Rank: family

Taxonomic lineage: cellular organisms , Eukaryota , Viridiplantae , Streptophyta , Streptophytina , Embryophyta , Tracheophyta , Euphyllophyta , Spermatophyta , Magnoliophyta , Mesangiospermae , eudicotyledons , Gunneridae , Pentapetalae , rosids , fabids , Fabales

Direct sub-taxa of Fabaceae: Caesalpinioideae , environmental samples , Mimosoideae , Papilionoideae , unclassified Fabaceae

Unification Links: NCBI-Taxonomy:3803


Pathways present in Fabaceae or one of its sub-taxa (223).
These pathways were observed experimentally in this taxon or one of its sub-taxa:
2,3-cis-flavanols biosynthesis ,
2,3-trans-flavanols biosynthesis ,
26,27-dehydrozymosterol metabolism ,
(3E)-4,8-dimethylnona-1,3,7-triene biosynthesis ,
4-aminobenzoate biosynthesis ,
5-deoxystrigol biosynthesis ,
6,7,4'-trihydroxyisoflavone biosynthesis ,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I ,
abscisic acid glucose ester biosynthesis ,
acacetin biosynthesis ,
acetaldehyde biosynthesis I ,
adenine and adenosine salvage II ,
adenosine nucleotides degradation I ,
afrormosin conjugates interconversion ,
ajugose biosynthesis I (galactinol-dependent) ,
alkane biosynthesis II ,
allantoin degradation to glyoxylate II ,
allantoin degradation to glyoxylate III ,
allantoin degradation to ureidoglycolate II (ammonia producing) ,
α-linolenate biosynthesis ,
ammonia assimilation cycle I ,
ammonia assimilation cycle II ,
anthocyanin biosynthesis (cyanidin 3-O-glucoside) ,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside) ,
apigenin glycosides biosynthesis ,
arginine biosynthesis II (acetyl cycle) ,
ascorbate glutathione cycle ,
asparagine degradation I ,
asparagine degradation II ,
β-alanine biosynthesis I ,
β-alanine biosynthesis II ,
betulinate biosynthesis ,
biochanin A conjugates interconversion ,
biotin-carboxyl carrier protein assembly ,
B series fagopyritols biosynthesis ,
canavanine biosynthesis ,
canavanine degradation ,
cardiolipin biosynthesis II ,
CDP-diacylglycerol biosynthesis I ,
chlorogenic acid biosynthesis II ,
choline biosynthesis I ,
choline biosynthesis III ,
chrysoeriol biosynthesis ,
cinnamate esters biosynthesis ,
CMP-KDO biosynthesis II (from D-arabinose 5-phosphate) ,
coniferin metabolism ,
coumarin biosynthesis (via 2-coumarate) ,
coumarin metabolism (to melilotic acid) ,
coumestrol biosynthesis ,
cutin biosynthesis ,
cyanide detoxification I ,
cytokinin-O-glucosides biosynthesis ,
daidzein conjugates interconversion ,
dalcochinin biosynthesis ,
dalpatein and dalnigrein biosynthesis ,
echinatin biosynthesis ,
(E,E)-4,8,12-trimethyltrideca-1,3,7,11-tetraene biosynthesis ,
ethylene biosynthesis I (plants) ,
fatty acid α-oxidation I ,
fatty acid biosynthesis initiation I ,
fatty acid biosynthesis (plant mitochondria) ,
flavonoid biosynthesis ,
flavonol biosynthesis ,
folate transformations II ,
formononetin biosynthesis ,
formononetin conjugates interconversion ,
GA12 biosynthesis ,
galactose degradation III ,
galactose degradation I (Leloir pathway) ,
galactosylcyclitol biosynthesis ,
genistein conjugates interconversion ,
gibberellin biosynthesis III (early C-13 hydroxylation) ,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation) ,
gibberellin inactivation I (2β-hydroxylation) ,
gluconeogenesis I ,
glutamate and glutamine biosynthesis ,
glutamate biosynthesis IV ,
glutamate removal from folates ,
glutathione redox reactions I ,
glutathione redox reactions II ,
glyceollin biosynthesis I ,
glyceollin biosynthesis II ,
glycine cleavage ,
glycolysis IV (plant cytosol) ,
glycyrrhetinate biosynthesis ,
gossypetin metabolism ,
guanine and guanosine salvage II ,
guanosine nucleotides degradation I ,
guanosine nucleotides degradation II ,
hispidol biosynthesis ,
homogalacturonan biosynthesis ,
homogalacturonan degradation ,
homoglutathione biosynthesis ,
homophytochelatin biosynthesis ,
indole-3-acetate degradation III ,
isoflavonoid biosynthesis I ,
isoflavonoid biosynthesis II ,
isoprene biosynthesis I ,
kaempferol triglucoside biosynthesis ,
kievitone biosynthesis ,
lathyrine biosynthesis ,
linamarin biosynthesis ,
linoleate biosynthesis I (plants) ,
lotaustralin biosynthesis ,
lotaustralin degradation ,
lupanine biosynthesis ,
lupinate biosynthesis ,
lysine biosynthesis VI ,
maackiain biosynthesis ,
maackiain conjugates interconversion ,
mannitol degradation II ,
medicarpin biosynthesis ,
medicarpin conjugates interconversion ,
methionine salvage cycle I (bacteria and plants) ,
methionine salvage cycle II (plants) ,
methylquercetin biosynthesis ,
mimosine biosynthesis ,
naringenin biosynthesis (engineered) ,
oleanolate biosynthesis ,
ω- hydroxylation of laurate ,
pantothenate and coenzyme A biosynthesis II (plants) ,
pentacyclic triterpene biosynthesis ,
phaselate biosynthesis ,
phaseollin biosynthesis ,
phenolic malonylglucosides biosynthesis ,
phosphate acquisition ,
phosphatidylcholine biosynthesis III ,
phosphatidylethanolamine biosynthesis II ,
phosphatidylethanolamine biosynthesis III ,
phosphatidylglycerol biosynthesis II (non-plastidic) ,
phosphatidylglycerol biosynthesis I (plastidic) ,
phospholipases ,
phospholipid biosynthesis II ,
phosphopantothenate biosynthesis I ,
phytate degradation I ,
phytate degradation II ,
phytochelatins biosynthesis ,
pinitol biosynthesis II ,
pisatin biosynthesis ,
plant sterol biosynthesis ,
ponciretin biosynthesis ,
proanthocyanidin biosynthesis from flavanols ,
proline biosynthesis III ,
proline biosynthesis IV ,
purine nucleotides degradation I (plants) ,
putrescine biosynthesis IV ,
putrescine degradation IV ,
pyrimidine deoxyribonucleosides salvage ,
pyrimidine deoxyribonucleotides de novo biosynthesis I ,
pyruvate decarboxylation to acetyl CoA ,
pyruvate fermentation to ethanol II ,
quercetin triglucoside biosynthesis ,
resveratrol biosynthesis ,
rot-2'-enonate biosynthesis ,
rotenoid biosynthesis I ,
rotenoid biosynthesis II ,
rutin biosynthesis ,
S-adenosyl-L-methionine cycle II ,
saponin biosynthesis IV ,
selenate reduction ,
seleno-amino acid biosynthesis ,
seleno-amino acid detoxification and volatilization III ,
S-methyl-5'-thioadenosine degradation I ,
S-methyl-5-thio-α-D-ribose 1-phosphate degradation ,
sophoraflavanone G biosynthesis ,
soybean saponin I biosynthesis ,
sphingolipid biosynthesis (plants) ,
stachyose biosynthesis ,
starch biosynthesis ,
sucrose biosynthesis I (from photosynthesis) ,
sucrose biosynthesis II ,
sucrose degradation II (sucrose synthase) ,
sulfate activation for sulfonation ,
sulfate reduction II (assimilatory) ,
superpathway of acetyl-CoA biosynthesis ,
superpathway of allantoin degradation in plants ,
superpathway of ammonia assimilation (plants) ,
superpathway of anaerobic sucrose degradation ,
superpathway of anthocyanin biosynthesis (from delphinidin 3-O-glucoside) ,
superpathway of choline biosynthesis ,
superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle ,
superpathway of fatty acid biosynthesis II (plant) ,
superpathway of flavones and derivatives biosynthesis ,
superpathway of formononetin derivative biosynthesis ,
superpathway of gibberellin biosynthesis ,
superpathway of gibberellin GA12 biosynthesis ,
superpathway of guanosine nucleotides degradation (plants) ,
superpathway of isoflavonoids (via naringenin) ,
superpathway of linamarin and lotaustralin biosynthesis ,
superpathway of phosphatidylcholine biosynthesis ,
superpathway of pterocarpan biosynthesis (via daidzein) ,
superpathway of pterocarpan biosynthesis (via formononetin) ,
superpathway of purines degradation in plants ,
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis ,
superpathway of seleno-compound metabolism ,
superpathway of serine and glycine biosynthesis I ,
superpathway of tetrahydrofolate biosynthesis ,
TCA cycle II (plants and fungi) ,
ternatin C3 biosynthesis ,
ternatin C5 biosynthesis ,
tetrahydrofolate biosynthesis ,
triacylglycerol biosynthesis ,
trigonelline biosynthesis ,
ubiquinol-10 biosynthesis (eukaryotic) ,
UDP-α-D-glucuronate biosynthesis (from myo-inositol) ,
UDP-D-galacturonate biosynthesis II (from D-galacturonate) ,
UDP-D-xylose biosynthesis ,
UDP-L-arabinose biosynthesis I (from UDP-xylose) ,
UDP-L-arabinose biosynthesis II (from L-arabinose) ,
UDP-sugars interconversion ,
urate biosynthesis/inosine 5'-phosphate degradation ,
urate degradation to allantoin I ,
urea degradation II ,
ureide biosynthesis ,
ursolate biosynthesis ,
UTP and CTP dephosphorylation I ,
UTP and CTP dephosphorylation II ,
vestitol and sativan biosynthesis ,
vicianin bioactivation ,
wighteone and luteone biosynthesis ,
willardiine and isowillardiine biosynthesis ,
xylan biosynthesis ,
xyloglucan biosynthesis

Additional pathways which may be present in Fabaceae and all its sub-taxa (695)
These pathways were inferred using their expected taxonomic range:
(+)-camphor biosynthesis ,
(+)-secoisolariciresinol diglucoside biosynthesis ,
(1,4)-β-xylan degradation ,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants) ,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) ,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3) ,
2,4,6-trinitrotoluene degradation ,
[2Fe-2S] iron-sulfur cluster biosynthesis ,
2-O-acetyl-3-O-trans-coutarate biosynthesis ,
2-oxobutanoate degradation I ,
2-oxoglutarate decarboxylation to succinyl-CoA ,
2-oxoisovalerate decarboxylation to isobutanoyl-CoA ,
3,4-dihydroxymandelonitrile β-D-glucose biosynthesis ,
3,5-dimethoxytoluene biosynthesis ,
3β-hydroxysesquiterpene lactone biosynthesis ,
3-carene biosynthesis ,
3-dehydroquinate biosynthesis I ,
3-methylthiopropanoate biosynthesis ,
3-phosphoinositide biosynthesis ,
3-phosphoinositide degradation ,
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis ,
4-aminobutyrate degradation ,
4-aminobutyrate degradation IV ,
4-hydroxybenzoate biosynthesis I (eukaryotes) ,
4-hydroxybenzoate biosynthesis IV ,
4-hydroxybenzoate biosynthesis V ,
4-hydroxycoumarin and dicoumarol biosynthesis ,
4-hydroxyphenylpyruvate biosynthesis ,
5-aminoimidazole ribonucleotide biosynthesis I ,
6'-deoxychalcone metabolism ,
9-lipoxygenase and 9-allene oxide synthase pathway ,
9-lipoxygenase and 9-hydroperoxide lyase pathway ,
abscisic acid biosynthesis ,
abscisic acid biosynthesis shunt ,
acetaldehyde biosynthesis II ,
acetoin biosynthesis III ,
acetyl-CoA biosynthesis III (from citrate) ,
acyl-ACP thioesterase pathway ,
acylated cyanidin galactoside biosynthesis ,
acyl carrier protein metabolism II (mammalian) ,
acyl-CoA hydrolysis ,
adenine and adenosine salvage II ,
adenine and adenosine salvage III ,
adenosine 5'-phosphoramidate biosynthesis ,
adenosine deoxyribonucleotides de novo biosynthesis ,
adenosine nucleotides degradation II ,
adenosine ribonucleotides de novo biosynthesis ,
aerobic respiration I (cytochrome c) ,
aerobic respiration III (alternative oxidase pathway) ,
ajugose biosynthesis II (galactinol-independent) ,
alanine biosynthesis II ,
alanine biosynthesis III ,
alanine degradation III ,
alanine degradation II (to D-lactate) ,
alkane oxidation ,
allantoin degradation to ureidoglycolate I (urea producing) ,
all-trans-decaprenyl diphosphate biosynthesis ,
all-trans-farnesol biosynthesis ,
all trans undecaprenyl diphosphate biosynthesis ,
aloesone biosynthesis I ,
α-amyrin biosynthesis ,
α-eleostearic acid biosynthesis ,
anthocyanidin 3-malylglucoside biosynthesis (acyl-glucose dependent) ,
anthocyanidin modification (Arabidopsis) ,
anthocyanidin sophoroside metabolism ,
anthocyanin biosynthesis (delphinidin 3-O-glucoside) ,
anthranilate degradation IV (aerobic) ,
apigeninidin 5-O-glucoside biosynthesis ,
arabidiol biosynthesis ,
arginine biosynthesis I (via L-ornithine) ,
arginine degradation I (arginase pathway) ,
arginine degradation V (arginine deiminase pathway) ,
arginine degradation VI (arginase 2 pathway) ,
arginine degradation X (arginine monooxygenase pathway) ,
asparagine biosynthesis I ,
asparagine biosynthesis II ,
aspartate biosynthesis ,
aspartate degradation I ,
astaxanthin biosynthesis ,
baicalein degradation (hydrogen peroxide detoxification) ,
baicalein metabolism ,
barbaloin biosynthesis ,
baruol biosynthesis ,
benzoate biosynthesis I (CoA-dependent, β-oxidative) ,
benzoate biosynthesis II (CoA-independent, non-β-oxidative) ,
benzoate biosynthesis III (CoA-dependent, non-β-oxidative) ,
benzoyl-β-D-glucopyranose biosynthesis ,
benzoyl-CoA biosynthesis ,
bergamotene biosynthesis I ,
bergamotene biosynthesis II ,
beta-carboline biosynthesis ,
β-carotene biosynthesis ,
β-carotene biosynthesis (engineered) ,
β-caryophyllene biosynthesis ,
β-cubebene biosynthesis ,
biotin biosynthesis from 8-amino-7-oxononanoate I ,
bisabolene biosynthesis ,
bisbenzylisoquinoline alkaloid biosynthesis ,
bixin biosynthesis ,
brassinosteroid biosynthesis I ,
brassinosteroid biosynthesis II ,
C4 photosynthetic carbon assimilation cycle, NAD-ME type ,
C4 photosynthetic carbon assimilation cycle, NADP-ME type ,
caffeoylglucarate biosynthesis ,
calendate biosynthesis ,
callose biosynthesis ,
Calvin-Benson-Bassham cycle ,
(-)-camphor biosynthesis ,
canthaxanthin biosynthesis ,
capsanthin and capsorubin biosynthesis ,
carotenoid cleavage ,
CDP-diacylglycerol biosynthesis II ,
cellulose biosynthesis ,
ceramide degradation ,
ceramide de novo biosynthesis ,
C-glycosylflavone biosynthesis I ,
C-glycosylflavone biosynthesis II ,
C-glycosylflavone biosynthesis III ,
chitin degradation II ,
chlorogenic acid biosynthesis I ,
chlorogenic acid degradation ,
chlorophyll a biosynthesis I ,
chlorophyll a biosynthesis II ,
chlorophyll a degradation I ,
chlorophyll a degradation II ,
chlorophyll cycle ,
chlorophyllide a biosynthesis I (aerobic, light-dependent) ,
choline biosynthesis II ,
choline degradation I ,
chorismate biosynthesis from 3-dehydroquinate ,
chorismate biosynthesis I ,
chrysophanol biosynthesis ,
cichoriin interconversion ,
cis-calamenene related sesquiterpenoids biosynthesis ,
cis-vaccenate biosynthesis ,
cis-zeatin biosynthesis ,
citrulline degradation ,
CMP-2-keto-3-deoxy-D-glycero-D-galacto-nononate biosynthesis ,
CMP-N-acetylneuraminate biosynthesis I (eukaryotes) ,
CMP-N-glycoloylneuraminate biosynthesis ,
CMP phosphorylation ,
CO2 fixation into oxaloacetate (anapleurotic) ,
coenzyme A biosynthesis I ,
cornusiin E biosynthesis ,
costunolide biosynthesis ,
coumarins biosynthesis (engineered) ,
crepenynate biosynthesis ,
curcumene biosynthesis ,
curcumin glucoside biosynthesis ,
cuticular wax biosynthesis ,
cyanate degradation ,
cyanide degradation ,
cyanidin 3,7-diglucoside polyacylation biosynthesis ,
cyanidin diglucoside biosynthesis (acyl-glucose dependent) ,
cyclopropane and cyclopropene fatty acid biosynthesis ,
cysteine biosynthesis I ,
cytokinins 7-N-glucoside biosynthesis ,
cytokinins 9-N-glucoside biosynthesis ,
cytokinins degradation ,
dammara-20,24-diene biosynthesis ,
daphnetin modification ,
daphnin interconversion ,
dehydroscoulerine biosynthesis ,
delphinidin diglucoside biosynthesis (acyl-glucose dependent) ,
Δ5-eicosenoate biosynthesis ,
Δ6-hexadecenoate biosynthesis ,
δ-carotene biosynthesis ,
δ-guaiene biosynthesis ,
detoxification of reactive carbonyls in chloroplasts ,
dhurrin biosynthesis ,
dhurrin degradation ,
diacylglycerol biosynthesis (PUFA enrichment in oilseed) ,
diacylglyceryl-N,N,N-trimethylhomoserine biosynthesis ,
DIBOA-glucoside biosynthesis ,
dihydroconiferyl alcohol biosynthesis ,
DIMBOA-glucoside biosynthesis ,
dimethylsulfoniopropionate biosynthesis II (Spartina) ,
dimethylsulfoniopropionate biosynthesis I (Wollastonia) ,
dimethylsulfoniopropionate degradation I (cleavage) ,
dimethyl sulfoxide degradation ,
dimorphecolate biosynthesis ,
diphthamide biosynthesis (eukaryotes) ,
diphyllin biosynthesis ,
divinyl ether biosynthesis I ,
divinyl ether biosynthesis II ,
D-mannose degradation ,
D-myo-inositol (1,3,4)-trisphosphate biosynthesis ,
D-myo-inositol (1,4,5,6)-tetrakisphosphate biosynthesis ,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis ,
D-myo-inositol (1,4,5)-trisphosphate degradation ,
D-myo-inositol (3,4,5,6)-tetrakisphosphate biosynthesis ,
D-myo-inositol-5-phosphate metabolism ,
docosahexanoate biosynthesis I ,
docosahexanoate biosynthesis II ,
dolichyl-diphosphooligosaccharide biosynthesis ,
D-serine degradation ,
D-sorbitol degradation I ,
D-sorbitol degradation II ,
dTDP-L-rhamnose biosynthesis II ,
ent-kaurene biosynthesis I ,
Entner-Doudoroff pathway I ,
epoxy fatty acid biosynthesis ,
epoxysqualene biosynthesis ,
esculetin biosynthesis ,
esculetin modification ,
esterified suberin biosynthesis ,
ethanol degradation II ,
eudesmol biosynthesis ,
eugenol and isoeugenol biosynthesis ,
eumelanin biosynthesis ,
eupatolitin 3-O-glucoside biosynthesis ,
extended VTC2 cycle ,
farnesene biosynthesis ,
farnesylcysteine salvage pathway ,
fatty acid activation ,
fatty acid β-oxidation III (unsaturated, odd number) ,
fatty acid β-oxidation II (peroxisome) ,
fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) ,
fatty acid elongation -- saturated ,
fenchol biosynthesis I ,
fenchone biosynthesis ,
ferulate and sinapate biosynthesis ,
flavin biosynthesis I (bacteria and plants) ,
flavonoid biosynthesis (in equisetum) ,
flavonol acylglucoside biosynthesis III - quercetin derivatives ,
flavonol acylglucoside biosynthesis II - isorhamnetin derivatives ,
flavonol acylglucoside biosynthesis I - kaempferol derivatives ,
fluoroacetate and fluorothreonine biosynthesis ,
folate polyglutamylation ,
folate transformations I ,
formaldehyde oxidation II (glutathione-dependent) ,
free phenylpropanoid acid biosynthesis ,
fructan biosynthesis ,
fructan degradation ,
furaneol biosynthesis ,
furcatin degradation ,
gallate biosynthesis ,
gallotannin biosynthesis ,
galloylated catechin biosynthesis ,
γ-coniciene and coniine biosynthesis ,
γ-linolenate biosynthesis I (plants) ,
GDP-glucose biosynthesis ,
GDP-L-fucose biosynthesis I (from GDP-D-mannose) ,
GDP-L-fucose biosynthesis II (from L-fucose) ,
GDP-L-galactose biosynthesis ,
GDP-mannose biosynthesis ,
genistin gentiobioside biosynthesis ,
gentiodelphin biosynthesis ,
geodin biosynthesis ,
geraniol and geranial biosynthesis ,
geranyl acetate biosynthesis ,
geranyl diphosphate biosynthesis ,
geranylgeranyl diphosphate biosynthesis ,
germacrene biosynthesis ,
gibberellin biosynthesis II (early C-3 hydroxylation) ,
gibberellin biosynthesis V ,
gibberellin inactivation III (epoxidation) ,
gibberellin inactivation II (methylation) ,
glucose and glucose-1-phosphate degradation ,
glutamate biosynthesis I ,
glutamate biosynthesis V ,
glutamate degradation I ,
glutamate degradation IV ,
glutamine biosynthesis I ,
glutamine biosynthesis III ,
glutamine degradation I ,
glutathione biosynthesis ,
glutathione-mediated detoxification II ,
glutathionylspermidine biosynthesis ,
glycerol-3-phosphate shuttle ,
glycerol degradation I ,
glycerol degradation V ,
glycine betaine biosynthesis III (plants) ,
glycine betaine degradation I ,
glycine biosynthesis I ,
glycine biosynthesis III ,
glycogen degradation I ,
glycogen degradation III ,
glycolipid biosynthesis ,
glycolipid desaturation ,
glycolysis I (from glucose 6-phosphate) ,
glycolysis II (from fructose 6-phosphate) ,
glyoxylate cycle ,
guanine and guanosine salvage III ,
guanosine deoxyribonucleotides de novo biosynthesis I ,
heme biosynthesis I (aerobic) ,
heme degradation ,
heptadecane biosynthesis ,
heptaprenyl diphosphate biosynthesis ,
hesperitin glycoside biosynthesis ,
hexaprenyl diphosphate biosynthesis ,
histidine biosynthesis ,
homocysteine and cysteine interconversion ,
homolactic fermentation ,
homoserine biosynthesis ,
homospermidine biosynthesis ,
hydroxycinnamate sugar acid ester biosynthesis ,
hydroxycinnamic acid serotonin amides biosynthesis ,
hydroxycinnamic acid tyramine amides biosynthesis ,
hydroxyjasmonate sulfate biosynthesis ,
hydroxylated fatty acid biosynthesis (plants) ,
hydroxymethylpyrimidine salvage ,
hyperxanthone E biosynthesis ,
hypoglycin biosynthesis ,
hypusine biosynthesis ,
indican biosynthesis ,
indigo biosynthesis ,
indole-3-acetate activation I ,
indole-3-acetate activation II ,
indole-3-acetate biosynthesis I ,
indole-3-acetate biosynthesis II ,
indole-3-acetate conjugate biosynthesis II ,
indole-3-acetate degradation I ,
indole-3-acetate degradation II ,
indole-3-acetate degradation IV ,
indole-3-acetate degradation V ,
indole-3-acetate degradation VI ,
indole-3-acetate degradation VII ,
indole-3-acetyl-ester conjugate biosynthesis ,
indole degradation to anthranil and anthranilate ,
inosine-5'-phosphate biosynthesis II ,
inositol pyrophosphates biosynthesis ,
iron reduction and absorption ,
isoleucine biosynthesis I ,
isoleucine biosynthesis I (from threonine) ,
isoleucine degradation I ,
isoprene biosynthesis II (engineered) ,
isovitexin and isovitexin glycosides biosynthesis ,
jasmonic acid biosynthesis ,
jasmonoyl-amino acid conjugates biosynthesis I ,
jasmonoyl-amino acid conjugates biosynthesis II ,
justicidin B biosynthesis ,
kaempferide triglycoside biosynthesis ,
kaempferol diglycoside biosynthesis (pollen-specific) ,
kaempferol gentiobioside biosynthesis ,
kauralexin biosynthesis ,
(KDO)2-lipid A biosynthesis I ,
KDO transfer to lipid IVA I ,
lactucaxanthin biosynthesis ,
laminaribiose degradation ,
L-ascorbate biosynthesis II (L-gulose pathway) ,
L-ascorbate biosynthesis I (L-galactose pathway) ,
L-ascorbate degradation III ,
L-ascorbate degradation IV ,
L-ascorbate degradation V ,
lawsone biosynthesis ,
L-carnitine biosynthesis ,
L-cysteine degradation II ,
L-dopachrome biosynthesis ,
leucine biosynthesis ,
leucine degradation I ,
leucodelphinidin biosynthesis ,
leucopelargonidin and leucocyanidin biosynthesis ,
L-glutamine biosynthesis II (tRNA-dependent) ,
linalool biosynthesis I ,
linalool biosynthesis II ,
linamarin degradation ,
linear furanocoumarin biosynthesis ,
linustatin bioactivation ,
lipid IVA biosynthesis ,
lipoate biosynthesis and incorporation I ,
L-Nδ-acetylornithine biosynthesis ,
L-sorbose degradation ,
lupeol biosynthesis ,
lutein biosynthesis ,
luteolin biosynthesis ,
luteolin glycosides biosynthesis ,
luteolinidin 5-O-glucoside biosynthesis ,
luteolin triglucuronide biosynthesis ,
luteolin triglucuronide degradation ,
lysine degradation II (mammalian) ,
magnoflorine biosynthesis ,
mannitol biosynthesis ,
mannosyl-glycoprotein N-acetylglucosaminyltransferases ,
marneral biosynthesis ,
matairesinol biosynthesis ,
melibiose degradation ,
methionine biosynthesis II ,
methionine degradation II ,
methionine degradation I (to homocysteine) ,
methylerythritol phosphate pathway II ,
methylglyoxal degradation II ,
methylglyoxal degradation III ,
methylglyoxal degradation VII ,
methylhalides biosynthesis (plants) ,
methyl indole-3-acetate interconversion ,
methyl ketone biosynthesis ,
mevalonate pathway I ,
mitochondrial L-carnitine shuttle ,
molybdenum cofactor biosynthesis ,
momilactone A biosynthesis ,
monoacylglycerol metabolism (yeast) ,
monolignol glucosides biosynthesis ,
monoterpene biosynthesis ,
myo-inositol biosynthesis ,
myricetin gentiobioside biosynthesis ,
NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde ,
NAD biosynthesis I (from aspartate) ,
NAD biosynthesis II (from tryptophan) ,
NADH repair ,
NAD/NADH phosphorylation and dephosphorylation ,
naringenin glycoside biosynthesis ,
neolinustatin bioactivation ,
neoxanthin biosynthesis ,
nevadensin biosynthesis ,
N-glucosylnicotinate metabolism ,
nicotianamine biosynthesis ,
nitrate reduction II (assimilatory) ,
nitric oxide biosynthesis (plants) ,
nonaprenyl diphosphate biosynthesis I ,
nonaprenyl diphosphate biosynthesis II ,
noscapine biosynthesis ,
octanoyl-ACP biosynthesis (mitochondria, yeast) ,
octaprenyl diphosphate biosynthesis ,
o-diquinones biosynthesis ,
oleate biosynthesis I (plants) ,
oligomeric urushiol biosynthesis ,
ω-hydroxylation of caprate and laurate ,
oryzalexin D and E biosynthesis ,
oryzalide A biosynthesis ,
oxalate biosynthesis ,
oxalate degradation IV ,
oxidized GTP and dGTP detoxification ,
oxygenic photosynthesis ,
palmatine biosynthesis ,
palmitate biosynthesis II (bacteria and plants) ,
palmitoleate biosynthesis II ,
pantothenate and coenzyme A biosynthesis III ,
papaverine biosynthesis ,
patchoulol biosynthesis ,
pelargonidin conjugates biosynthesis ,
pelargonidin diglucoside biosynthesis (acyl-glucose dependent) ,
pentagalloylglucose biosynthesis ,
pentaketide chromone biosynthesis ,
pentose phosphate pathway ,
pentose phosphate pathway (non-oxidative branch) ,
pentose phosphate pathway (oxidative branch) I ,
petroselinate biosynthesis ,
phaseic acid biosynthesis ,
phenylalanine biosynthesis (cytosolic, plants) ,
phenylalanine biosynthesis II ,
phenylalanine degradation V ,
phenylethanol biosynthesis ,
phenylethanol glycoconjugate biosynthesis ,
phenylethyl acetate biosynthesis ,
phenylpropanoid biosynthesis ,
phenylpropanoid biosynthesis, initial reactions ,
phenylpropanoids methylation (ice plant) ,
phloridzin biosynthesis ,
phosphate utilization in cell wall regeneration ,
phosphatidate metabolism, as a signaling molecule ,
phosphatidylcholine acyl editing ,
phosphatidylcholine biosynthesis I ,
phosphatidylcholine biosynthesis II ,
phosphatidylcholine biosynthesis IV ,
phosphatidylcholine resynthesis via glycerophosphocholine ,
phosphatidylethanolamine biosynthesis I ,
phospholipid desaturation ,
phospholipid remodeling (phosphatidate, yeast) ,
phospholipid remodeling (phosphatidylcholine, yeast) ,
phospholipid remodeling (phosphatidylethanolamine, yeast) ,
phosphopantothenate biosynthesis II ,
photorespiration ,
photosynthesis light reactions ,
phylloquinol biosynthesis ,
phytocassanes biosynthesis, shared reactions ,
phytochromobilin biosynthesis ,
phytol salvage pathway ,
phytyl diphosphate biosynthesis ,
pinitol biosynthesis I ,
pinobanksin biosynthesis ,
pinolenic acid and coniferonic acid biosynthesis ,
pinosylvin metabolism ,
plastoquinol-9 biosynthesis I ,
plaunotol biosynthesis ,
plumbagin biosynthesis ,
podophyllotoxin and 6-methoxypodophyllotoxin biosynthesis ,
podophyllotoxin glucosides metabolism ,
poly-hydroxy fatty acids biosynthesis ,
polyisoprenoid biosynthesis (E. coli) ,
polymethylated kaempferol biosynthesis ,
polymethylated myricetin biosynthesis (tomato) ,
polymethylated quercetin biosynthesis ,
polymethylated quercetin glucoside biosynthesis II - quercetagetin series (Chrysosplenium) ,
polymethylated quercetin glucoside biosynthesis I - quercetin series (Chrysosplenium) ,
polyvinyl alcohol degradation ,
proline biosynthesis II (from arginine) ,
proline degradation ,
propionyl CoA degradation ,
protein O-[N-acetyl]-glucosylation ,
protein ubiquitination ,
PRPP biosynthesis I ,
pseudouridine degradation ,
pterostilbene biosynthesis ,
punicic acid biosynthesis ,
purine deoxyribonucleosides salvage ,
putrescine biosynthesis II ,
putrescine biosynthesis III ,
pyridine nucleotide cycling (plants) ,
pyridoxal 5'-phosphate biosynthesis II ,
pyridoxal 5'-phosphate salvage I ,
pyridoxal 5'-phosphate salvage II (plants) ,
pyrimidine deoxyribonucleotide phosphorylation ,
pyrimidine deoxyribonucleotides dephosphorylation ,
pyrimidine nucleobases salvage I ,
pyrimidine ribonucleosides salvage I ,
pyrimidine ribonucleosides salvage II ,
pyruvate fermentation to acetate VII ,
pyruvate fermentation to butanol II ,
pyruvate fermentation to hexanol ,
pyruvate fermentation to isobutanol (engineered) ,
pyruvate fermentation to lactate ,
quercetin diglycoside biosynthesis (pollen-specific) ,
quercetin gentiotetraside biosynthesis ,
quercetin glucoside biosynthesis (Allium) ,
quercetin glucoside degradation (Allium) ,
quercetin sulfate biosynthesis ,
raspberry ketone biosynthesis ,
(R)-canadine biosynthesis ,
ricinine degradation ,
ricinoleate biosynthesis ,
rosmarinic acid biosynthesis I ,
rosmarinic acid biosynthesis II ,
rubber biosynthesis ,
Rubisco shunt ,
rutin degradation (plants) ,
S-adenosyl-L-methionine biosynthesis ,
sakuranetin biosynthesis ,
salicylate biosynthesis I ,
salicylate biosynthesis II ,
salicylate glucosides biosynthesis IV ,
salidroside biosynthesis ,
salvianin biosynthesis ,
salvigenin biosynthesis ,
sanguinarine and macarpine biosynthesis ,
santalene biosynthesis I ,
saponin biosynthesis II ,
saponin biosynthesis III ,
sciadonate biosynthesis ,
scopoletin biosynthesis ,
sedoheptulose bisphosphate bypass ,
seed germination protein turnover ,
seleno-amino acid detoxification and volatilization I ,
seleno-amino acid detoxification and volatilization II ,
selenocysteine biosynthesis II (archaea and eukaryotes) ,
selinene biosynthesis ,
serine biosynthesis ,
serine racemization ,
serinol biosynthesis ,
serotonin and melatonin biosynthesis ,
sesamin biosynthesis ,
sesquiterpenoid phytoalexins biosynthesis ,
shisonin biosynthesis ,
siroheme biosynthesis ,
S-methylmethionine cycle ,
spermidine biosynthesis I ,
spermidine hydroxycinnamic acid conjugates biosynthesis ,
spermine and spermidine degradation II ,
spermine and spermidine degradation III ,
spermine biosynthesis ,
sphingomyelin metabolism ,
sporopollenin precursor biosynthesis ,
stachyose degradation ,
starch degradation II ,
stearate biosynthesis II (bacteria and plants) ,
sterol:steryl ester interconversion (yeast) ,
steviol biosynthesis ,
steviol glucoside biosynthesis (rebaudioside A biosynthesis) ,
suberin monomers biosynthesis ,
sucrose degradation III (sucrose invertase) ,
sulfite oxidation IV ,
sulfolipid biosynthesis ,
superoxide radicals degradation ,
superpathay of heme biosynthesis from glutamate ,
superpathway of 1D-myo-inositol hexakisphosphate biosynthesis (plants) ,
superpathway of adenosine nucleotides de novo biosynthesis I ,
superpathway of adenosine nucleotides de novo biosynthesis II ,
superpathway of alliin degradation ,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside) ,
superpathway of anthocyanin biosynthesis (from pelargonidin 3-O-glucoside) ,
superpathway of asparagine biosynthesis ,
superpathway of benzoxazinoid glucosides biosynthesis ,
superpathway of betalain biosynthesis ,
superpathway of C28 brassinosteroid biosynthesis ,
superpathway of carotenoid biosynthesis ,
superpathway of citrulline metabolism ,
superpathway of dimethylsulfoniopropionate degradation ,
superpathway of D-myo-inositol (1,4,5)-trisphosphate metabolism ,
superpathway of fermentation (Chlamydomonas reinhardtii) ,
superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) ,
superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) ,
superpathway of glycolysis and Entner-Doudoroff ,
superpathway of glyoxylate cycle and fatty acid degradation ,
superpathway of guanosine nucleotides de novo biosynthesis I ,
superpathway of hydrolyzable tannin biosynthesis ,
superpathway of indole-3-acetate conjugate biosynthesis ,
superpathway of inositol phosphate compounds ,
superpathway of jasmonoyl-amino acid conjugates biosynthesis ,
superpathway of leucine, valine, and isoleucine biosynthesis ,
superpathway of linalool biosynthesis ,
superpathway of lipoxygenase ,
superpathway of lysine degradation ,
superpathway of lysine, threonine and methionine biosynthesis II ,
superpathway of NAD biosynthesis in eukaryotes ,
superpathway of phenylalanine and tyrosine biosynthesis ,
superpathway of phylloquinol biosynthesis ,
superpathway of plastoquinol biosynthesis ,
superpathway of polyamine biosynthesis II ,
superpathway of purine nucleotide salvage ,
superpathway of purine nucleotides de novo biosynthesis I ,
superpathway of pyrimidine deoxyribonucleoside salvage ,
superpathway of pyrimidine nucleobases salvage ,
superpathway of pyrimidine ribonucleosides salvage ,
superpathway of pyrimidine ribonucleotides de novo biosynthesis ,
superpathway of rosmarinic acid biosynthesis ,
superpathway of scopolin and esculin biosynthesis ,
superpathway of sialic acids and CMP-sialic acids biosynthesis ,
superpathway of tetrahydroxyxanthone biosynthesis ,
superpathway of thiamin diphosphate biosynthesis III (eukaryotes) ,
superpathway phosphatidate biosynthesis (yeast) ,
superpathway polymethylated quercetin/quercetagetin glucoside biosynthesis (Chrysosplenium) ,
syringetin biosynthesis ,
t-anethole biosynthesis ,
taxadiene biosynthesis (engineered) ,
taxiphyllin bioactivation ,
taxiphyllin biosynthesis ,
terminal O-glycans residues modification ,
terminal olefins biosynthesis I ,
terminal olefins biosynthesis II ,
tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate ,
tetrahydroxyxanthone biosynthesis (from 3-hydroxybenzoate) ,
tetrahydroxyxanthone biosynthesis (from benzoate) ,
tetrapyrrole biosynthesis I (from glutamate) ,
thiamin diphosphate biosynthesis IV (eukaryotes) ,
thiamin triphosphate metabolism ,
thiazole biosynthesis III (eukaryotes) ,
thio-molybdenum cofactor biosynthesis ,
thioredoxin pathway ,
thiosulfate disproportionation III (rhodanese) ,
threonine biosynthesis ,
threonine biosynthesis from homoserine ,
thymine degradation ,
trans-cinnamoyl-CoA biosynthesis ,
trans-lycopene biosynthesis II (plants) ,
trans, trans-farnesyl diphosphate biosynthesis ,
trans-zeatin biosynthesis ,
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis ,
triacylglycerol degradation ,
trichloroethylene degradation ,
tRNA charging ,
tRNA methylation (yeast) ,
tRNA splicing ,
tryptophan biosynthesis ,
tryptophan degradation VI (via tryptamine) ,
tuberonate glucoside biosynthesis ,
tyrosine biosynthesis I ,
tyrosine biosynthesis II ,
tyrosine biosynthesis III ,
ubiquinol-9 biosynthesis (eukaryotic) ,
UDP-α-D-glucuronate biosynthesis (from UDP-glucose) ,
UDP-D-apiose biosynthesis (from UDP-D-glucuronate) ,
UDP-D-galactose biosynthesis ,
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) ,
UDP-glucose biosynthesis ,
UDP-L-rhamnose biosynthesis ,
UDP-N-acetyl-D-glucosamine biosynthesis II ,
umbelliferone biosynthesis ,
UMP biosynthesis ,
unsaturated, even numbered fatty acid β-oxidation ,
uracil degradation I (reductive) ,
urea cycle ,
UTP and CTP de novo biosynthesis ,
valencene and 7-epi-α-selinene biosynthesis ,
valine biosynthesis ,
valine degradation I ,
vernolate biosynthesis ,
very long chain fatty acid biosynthesis I ,
very long chain fatty acid biosynthesis II ,
violdelphin biosynthesis ,
vitamin E biosynthesis (tocopherols) ,
vitamin E biosynthesis (tocotrienols) ,
vitexin and derivatives biosynthesis ,
volatile benzenoid biosynthesis I (ester formation) ,
volatile cinnamoic ester biosynthesis ,
volatile esters biosynthesis (during fruit ripening) ,
VTC2 cycle ,
wax esters biosynthesis II ,
wogonin metabolism ,
wound-induced proteolysis I ,
wybutosine biosynthesis ,
xanthine and xanthosine salvage ,
xylogalacturonan biosynthesis ,
zealexin biosynthesis ,
zeaxanthin, antheraxanthin and violaxanthin interconversion ,
zeaxanthin biosynthesis


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Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Tue Nov 25, 2014, BIOCYC14B.