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discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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MetaCyc Organism: Methanococcus aeolicus

Synonyms: strain Nankai-3, OCM 812, DSM 17508

Rank: species

Taxonomic lineage: cellular organisms , Archaea , Euryarchaeota , Methanococci , Methanococcales , Methanococcaceae , Methanococcus

Direct sub-taxa of Methanococcus aeolicus: Methanococcus aeolicus

Unification Links: NCBI-Taxonomy:42879


Pathways present in Methanococcus aeolicus or one of its sub-taxa (2).
These pathways were observed experimentally in this taxon or one of its sub-taxa:
isoleucine biosynthesis II ,
valine biosynthesis

Additional pathways which may be present in Methanococcus aeolicus and all its sub-taxa (290)
These pathways were inferred using their expected taxonomic range:
[2Fe-2S] iron-sulfur cluster biosynthesis ,
2-oxobutanoate degradation II ,
2-oxoglutarate decarboxylation to succinyl-CoA ,
2-oxoisovalerate decarboxylation to isobutanoyl-CoA ,
3-dehydroquinate biosynthesis II (archaea) ,
3-phenylpropionate degradation ,
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis ,
4-aminobenzoate biosynthesis ,
4-hydroxybenzoate biosynthesis II (microbes) ,
4-hydroxyphenylpyruvate biosynthesis ,
5-aminoimidazole ribonucleotide biosynthesis II ,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea) ,
7-(3-amino-3-carboxypropyl)-wyosine biosynthesis ,
acetate conversion to acetyl-CoA ,
acetate formation from acetyl-CoA I ,
acetate formation from acetyl-CoA II ,
acetate formation from acetyl-CoA III (succinate) ,
acyl-ACP thioesterase pathway ,
acyl carrier protein metabolism I ,
acyl-CoA hydrolysis ,
adenine and adenosine salvage I ,
adenine and adenosine salvage II ,
adenine and adenosine salvage III ,
adenine and adenosine salvage IV ,
adenosine 5'-phosphoramidate biosynthesis ,
adenosine deoxyribonucleotides de novo biosynthesis ,
adenosine nucleotides degradation II ,
adenosine nucleotides degradation IV ,
adenosine ribonucleotides de novo biosynthesis ,
adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I ,
adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II ,
adenosylcobalamin biosynthesis I (early cobalt insertion) ,
adenosylcobalamin biosynthesis II (late cobalt incorporation) ,
adenosylcobalamin salvage from cobalamin ,
adenosylcobalamin salvage from cobinamide II ,
alanine degradation IV ,
ammonia oxidation I (aerobic) ,
archaeosine biosynthesis ,
archaetidylinositol biosynthesis ,
archaetidylserine and archaetidylethanolamine biosynthesis ,
arginine biosynthesis II (acetyl cycle) ,
arginine biosynthesis IV (archaebacteria) ,
arginine biosynthesis I (via L-ornithine) ,
arginine degradation I (arginase pathway) ,
arginine degradation V (arginine deiminase pathway) ,
arsenate detoxification II (glutaredoxin) ,
arsenite oxidation II (respiratory) ,
asparagine biosynthesis III (tRNA-dependent) ,
asparagine degradation I ,
aspartate biosynthesis ,
aspartate degradation I ,
base-degraded thiamin salvage ,
β-alanine biosynthesis III ,
carbon disulfide oxidation I (anaerobic) ,
carbon tetrachloride degradation I ,
CDP-archaeol biosynthesis ,
chitin degradation I (archaea) ,
chlorate reduction ,
chlorogenic acid degradation ,
chorismate biosynthesis from 3-dehydroquinate ,
chorismate biosynthesis II (archaea) ,
cis-calamenene related sesquiterpenoids biosynthesis ,
citrulline degradation ,
CMP phosphorylation ,
CO2 fixation into oxaloacetate (anapleurotic) ,
cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) ,
cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation) ,
coenzyme A biosynthesis I ,
coenzyme B biosynthesis ,
coenzyme B/coenzyme M regeneration ,
coenzyme M biosynthesis I ,
costunolide biosynthesis ,
cysteine biosynthesis/homocysteine degradation ,
cysteine biosynthesis I ,
cysteine biosynthesis III (mammalian) ,
cysteine biosynthesis II (RNA-dependent) ,
dammara-20,24-diene biosynthesis ,
demethylmenaquinol-8 biosynthesis II ,
D-galactonate degradation ,
dimethyl sulfoxide degradation ,
di-myo-inositol phosphate biosynthesis ,
diphthamide biosynthesis (archaea) ,
D-mannose degradation ,
dTDP-L-rhamnose biosynthesis I ,
epoxysqualene biosynthesis ,
ethanol degradation I ,
ethanol degradation II ,
factor 420 biosynthesis ,
factor 420 polyglutamylation ,
factor 430 biosynthesis ,
fatty acid activation ,
fatty acid β-oxidation III (unsaturated, odd number) ,
flavin biosynthesis II (archaea) ,
folate polyglutamylation ,
folate transformations I ,
fructose degradation ,
GDP-glucose biosynthesis ,
GDP-mannose biosynthesis ,
gentisate degradation I ,
geranyl diphosphate biosynthesis ,
geranylgeranyl diphosphate biosynthesis ,
gluconeogenesis I ,
gluconeogenesis II (Methanobacterium thermoautotrophicum) ,
glucose and glucose-1-phosphate degradation ,
glucosylglycerate biosynthesis I ,
glutamate and glutamine biosynthesis ,
glutamate biosynthesis I ,
glutamate biosynthesis II ,
glutamate biosynthesis III ,
glutamate degradation I ,
glutamate degradation X ,
glutamine biosynthesis I ,
glutamine degradation II ,
glycerol degradation I ,
glycine betaine biosynthesis IV (from glycine) ,
glycine betaine biosynthesis V (from glycine) ,
glycine betaine degradation I ,
glycine biosynthesis III ,
glycine cleavage ,
glycogen degradation I ,
glycolysis I (from glucose 6-phosphate) ,
glycolysis II (from fructose 6-phosphate) ,
glycolysis V (Pyrococcus) ,
glyoxylate cycle ,
guanine and guanosine salvage III ,
guanosine deoxyribonucleotides de novo biosynthesis I ,
heme biosynthesis III (from siroheme) ,
heptaprenyl diphosphate biosynthesis ,
histidine biosynthesis ,
homolactic fermentation ,
homospermidine biosynthesis ,
hydrogen oxidation III (anaerobic, NADP) ,
hydrogen production II ,
hydrogen production III ,
hydrogen production IV ,
hydrogen production V ,
hydroxymethylpyrimidine salvage ,
incomplete reductive TCA cycle ,
inosine-5'-phosphate biosynthesis III ,
isoleucine degradation I ,
isoprene biosynthesis II (engineered) ,
kojibiose degradation ,
lactate biosynthesis (archaea) ,
laminaribiose degradation ,
L-arabinose degradation IV ,
leucine biosynthesis ,
L-glutamine biosynthesis II (tRNA-dependent) ,
lipoate salvage I ,
L-lactaldehyde degradation (aerobic) ,
lysine biosynthesis V ,
lysine biosynthesis VI ,
mannosylglycerate biosynthesis I ,
melibiose degradation ,
menaquinol-7 biosynthesis ,
menaquinol-8 biosynthesis ,
Methanobacterium thermoautotrophicum biosynthetic metabolism ,
methanofuran biosynthesis ,
methanogenesis from acetate ,
methanogenesis from CO2 ,
methanogenesis from dimethylamine ,
methanogenesis from dimethylsulfide ,
methanogenesis from methanethiol ,
methanogenesis from methanol ,
methanogenesis from methylamine ,
methanogenesis from methylthiopropionate ,
methanogenesis from tetramethylammonium ,
methanogenesis from trimethylamine ,
methionine degradation I (to homocysteine) ,
methionine salvage cycle I (bacteria and plants) ,
methyl-coenzyme M oxidation to CO2 ,
methyl-coenzyme M reduction to methane ,
methylhalides biosynthesis (plants) ,
methylwyosine biosynthesis ,
mevalonate pathway I ,
mevalonate pathway II (archaea) ,
mevalonate pathway III (archaea) ,
molybdenum cofactor biosynthesis ,
myo-inositol biosynthesis ,
NADH repair ,
nitrate reduction I (denitrification) ,
nitrogen fixation ,
nonaprenyl diphosphate biosynthesis I ,
octaprenyl diphosphate biosynthesis ,
ornithine biosynthesis ,
phenylalanine biosynthesis I ,
phenylethanol biosynthesis ,
phospholipases ,
phosphopantothenate biosynthesis III ,
plumbagin biosynthesis ,
polyhydroxybutyrate biosynthesis ,
polyhydroxydecanoate biosynthesis ,
polyisoprenoid biosynthesis (E. coli) ,
proline degradation ,
proline to cytochrome bo oxidase electron transfer ,
propionyl CoA degradation ,
PRPP biosynthesis I ,
purine deoxyribonucleosides degradation I ,
purine deoxyribonucleosides salvage ,
purine nucleotides degradation II (aerobic) ,
purine ribonucleosides degradation ,
pyridoxal 5'-phosphate biosynthesis II ,
pyrimidine deoxyribonucleosides degradation ,
pyrimidine deoxyribonucleosides salvage ,
pyrimidine deoxyribonucleotide phosphorylation ,
pyrimidine deoxyribonucleotides de novo biosynthesis I ,
pyrimidine deoxyribonucleotides de novo biosynthesis II ,
pyrimidine deoxyribonucleotides de novo biosynthesis III ,
pyrimidine deoxyribonucleotides de novo biosynthesis IV ,
pyrimidine deoxyribonucleotides dephosphorylation ,
pyrimidine nucleobases salvage I ,
pyrimidine nucleobases salvage II ,
pyrimidine ribonucleosides degradation ,
pyrimidine ribonucleosides salvage I ,
pyrimidine ribonucleosides salvage II ,
pyrimidine ribonucleosides salvage III ,
pyruvate decarboxylation to acetyl CoA ,
pyruvate fermentation to acetate and alanine ,
pyruvate fermentation to acetate III ,
pyruvate fermentation to isobutanol (engineered) ,
reductive acetyl coenzyme A pathway ,
reductive TCA cycle I ,
ribose degradation ,
S-adenosyl-L-methionine biosynthesis ,
S-adenosyl-L-methionine cycle I ,
sciadonate biosynthesis ,
selenocysteine biosynthesis II (archaea and eukaryotes) ,
selinene biosynthesis ,
serine biosynthesis ,
serine racemization ,
S-methyl-5'-thioadenosine degradation I ,
S-methyl-5-thio-α-D-ribose 1-phosphate degradation ,
spermidine biosynthesis I ,
spermidine biosynthesis III ,
spermine biosynthesis ,
starch degradation III ,
starch degradation IV ,
starch degradation V ,
sulfate reduction IV (dissimilatory) ,
sulfur reduction I ,
sulfur reduction II (via polysulfide) ,
superpathay of heme biosynthesis from glutamate ,
superpathway of acetate utilization and formation ,
superpathway of adenosine nucleotides de novo biosynthesis I ,
superpathway of adenosine nucleotides de novo biosynthesis II ,
superpathway of alliin degradation ,
superpathway of GDP-mannose-derived O-antigen building blocks biosynthesis ,
superpathway of glyoxylate bypass and TCA ,
superpathway of guanosine nucleotides de novo biosynthesis I ,
superpathway of hydrogen production ,
superpathway of menaquinol-7 biosynthesis ,
superpathway of methanogenesis ,
superpathway of pentose and pentitol degradation ,
superpathway of purine nucleotides de novo biosynthesis I ,
superpathway of pyrimidine deoxyribonucleoside salvage ,
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis ,
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) ,
superpathway of pyrimidine nucleobases salvage ,
superpathway of pyrimidine ribonucleosides degradation ,
superpathway of pyrimidine ribonucleosides salvage ,
superpathway of serine and glycine biosynthesis I ,
taxadiene biosynthesis (engineered) ,
TCA cycle I (prokaryotic) ,
tetrahydromethanopterin biosynthesis ,
tetrapyrrole biosynthesis I (from glutamate) ,
tetrathionate oxidation ,
thio-molybdenum cofactor biosynthesis ,
thioredoxin pathway ,
threonine biosynthesis ,
threonine biosynthesis from homoserine ,
threonine degradation II ,
trans-lycopene biosynthesis I (bacteria) ,
trans, trans-farnesyl diphosphate biosynthesis ,
trehalose biosynthesis V ,
trehalose biosynthesis VI ,
triacylglycerol degradation ,
tRNA charging ,
tRNA splicing ,
tryptophan biosynthesis ,
tyrosine biosynthesis I ,
UDP-D-galactose biosynthesis ,
UDP-glucose biosynthesis ,
UDP-N-acetyl-D-glucosamine biosynthesis I ,
UMP biosynthesis ,
uracil degradation I (reductive) ,
UTP and CTP de novo biosynthesis ,
UTP and CTP dephosphorylation I ,
valencene and 7-epi-α-selinene biosynthesis ,
xanthine and xanthosine salvage ,
xylose degradation III ,
xylose degradation IV


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Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Mon Nov 24, 2014, BIOCYC13B.