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MetaCyc Organization: The Arabidopsis Information Resource

Abbrev Name: TAIR

Affiliates: Athikkattuvalasu S Karthikeyan, Tom Walk, Hartmut Foerster, Christophe Tissier

Note: Listed below are contributions the organization has made to MetaCyc. They are sorted, with the most recent at the top.

Stats: Pathways: 335, Proteins: 445, RNAs: 0, Reactions: 267, Compounds: 195, Misc.: 0

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fatty acid biosynthesis (plant mitochondria) on 26-Apr-2011,
scopoletin biosynthesis on 19-Apr-2011,
detoxification of reactive carbonyls in chloroplasts on 05-Apr-2011,
salicin biosynthesis on 21-Mar-2011,
salicortin biosynthesis on 20-Mar-2011,
salicylate glucosides biosynthesis IV on 18-Mar-2011,
pinitol biosynthesis II on 02-Mar-2011,
pinitol biosynthesis I on 02-Mar-2011,
sporopollenin precursors biosynthesis on 23-Feb-2011,
starch degradation I on 16-Feb-2011,
poly-hydroxy fatty acids biosynthesis on 08-Feb-2011,
L-ascorbate degradation IV on 27-Jan-2011,
glucosinolate breakdown (via thiocyanate-forming protein) on 11-Jan-2011,
(E,E)-4,8,12-trimethyltrideca-1,3,7,11-tetraene biosynthesis on 07-Dec-2010,
salicylate glucosides biosynthesis III on 27-Sep-2010,
salicylate glucosides biosynthesis II on 27-Sep-2010,
salicylate glucosides biosynthesis I on 27-Sep-2010,
dicranin biosynthesis on 17-Sep-2010,
sciadonate biosynthesis on 16-Sep-2010,
farnesylcysteine salvage pathway on 16-Aug-2010,
juvenile hormone III biosynthesis I on 12-Aug-2010,
pyrimidine ribonucleosides salvage II on 23-Jul-2010,
caffeine degradation II on 21-Jul-2010,
caffeine degradation I (main, plants) on 20-Jul-2010,
L-glutamine biosynthesis III on 16-Jul-2010,
brassinosteroids inactivation on 15-Jul-2010,
superpathway of C28 brassinosteroid biosynthesis on 14-Jul-2010,
oxidized GTP and dGTP detoxification on 26-Apr-2010,
gibberellin inactivation III (epoxidation) on 15-Apr-2010,
ceramide degradation on 09-Apr-2010,
gibberellin inactivation II (methylation) on 05-Apr-2010,
benzoyl-CoA biosynthesis on 10-Mar-2010,
trans-cinnamoyl-CoA biosynthesis on 10-Mar-2010,
serinol biosynthesis on 10-Mar-2010,
hordatine biosynthesis on 02-Mar-2010,
benzoate biosynthesis III (CoA-dependent, non-β-oxidative) on 01-Mar-2010,
benzoate biosynthesis II (CoA-independent, non-β-oxidative) on 26-Feb-2010,
benzoate biosynthesis I (CoA-dependent, β-oxidative) on 26-Feb-2010,
spermidine hydroxycinnamic acid conjugates biosynthesis on 26-Feb-2010,
spermine and spermidine degradation III on 24-Feb-2010,
spermine and spermidine degradation II on 24-Feb-2010,
phenylphenalenone biosynthesis on 23-Feb-2010,
4-hydroxybenzoate biosynthesis V on 19-Feb-2010,
curcuminoid biosynthesis on 12-Feb-2010,
4-hydroxybenzoate biosynthesis IV on 11-Feb-2010,
rot-2'-enonate biosynthesis on 09-Feb-2010,
rotenoid biosynthesis II on 08-Feb-2010,
coumestrol biosynthesis on 16-Sep-2009,
echinatin biosynthesis on 02-Sep-2009,
indole glucosinolate breakdown (active in intact plant cell) on 29-Jul-2009,
indole glucosinolate breakdown (insect chewing induced) on 29-Jul-2009,
glucosinolate biosynthesis from hexahomomethionine on 23-Jul-2009,
glucosinolate biosynthesis from pentahomomethionine on 23-Jul-2009,
glucosinolate biosynthesis from tetrahomomethionine on 23-Jul-2009,
glucosinolate biosynthesis from trihomomethionine on 23-Jul-2009,
glucosinolate biosynthesis from dihomomethionine on 23-Jul-2009,
dihydroconiferyl alcohol biosynthesis on 10-Jul-2009,
isoprene biosynthesis I on 08-Jun-2009,
superpathway of flavones and derivatives biosynthesis on 03-Jun-2009,
luteolin glycosides biosynthesis on 28-Apr-2009,
hydroxyjasmonate sulfate biosynthesis on 27-Apr-2009,
superpathway of jasmonoyl-amino acid conjugates biosynthesis on 24-Apr-2009,
jasmonoyl-amino acid conjugates biosynthesis II on 24-Apr-2009,
chrysoeriol biosynthesis on 24-Apr-2009,
jasmonoyl-amino acid conjugates biosynthesis I on 17-Apr-2009,
indole-3-acetyl-amide conjugate biosynthesis on 13-Apr-2009,
quercetin sulfate biosynthesis on 02-Apr-2009,
extended VTC2 cycle on 05-Dec-2008,
VTC2 cycle on 05-Dec-2008,
L-ascorbate biosynthesis II (L-gulose pathway) on 03-Dec-2008,
methylquercetin biosynthesis on 10-Oct-2008,
phosphatidylglycerol biosynthesis II (non-plastidic) on 29-Sep-2008,
phosphatidylglycerol biosynthesis I (plastidic) on 29-Sep-2008,
phosphatidylethanolamine biosynthesis II on 29-Sep-2008,
superpathway of phosphatidylcholine biosynthesis on 26-Sep-2008,
phosphatidylcholine biosynthesis IV on 25-Sep-2008,
phosphatidylcholine biosynthesis III on 25-Sep-2008,
phosphatidylcholine biosynthesis II on 25-Sep-2008,
2,4,6-trinitrotoluene degradation on 24-Sep-2008,
2,3-cis-flavanols biosynthesis on 12-Sep-2008,
2,3-trans-flavanols biosynthesis on 05-Sep-2008,
isovitexin glycosides biosynthesis on 03-Sep-2008,
vitexin and derivatives biosynthesis on 25-Aug-2008,
vernolate biosynthesis I on 15-Aug-2008,
crepenynate biosynthesis on 15-Aug-2008,
amygdalin and prunasin degradation on 13-Aug-2008,
apigenin glycosides biosynthesis on 13-Aug-2008,
arabidiol biosynthesis on 10-Aug-2008,
marneral biosynthesis on 08-Aug-2008,
lotaustralin degradation on 07-Aug-2008,
thalianol and derivatives biosynthesis on 01-Aug-2008,
superpathway of linamarin and lotaustralin biosynthesis on 31-Jul-2008,
lotaustralin biosynthesis on 31-Jul-2008,
sorgoleone biosynthesis on 30-Jul-2008,
xylogalacturonan biosynthesis on 24-Jul-2008,
xyloglucan biosynthesis on 15-May-2008,
afrormosin conjugates interconversion on 12-May-2008,
ephedrine biosynthesis on 11-Apr-2008,
beta-carboline biosynthesis on 04-Apr-2008,
magnoflorine biosynthesis on 03-Apr-2008,
cocaine biosynthesis on 10-Mar-2008,
lacinilene C biosynthesis on 03-Mar-2008,
heliocides biosynthesis on 03-Mar-2008,
hypoglycin biosynthesis on 29-Feb-2008,
trichloroethylene degradation on 27-Feb-2008,
rubber biosynthesis on 20-Feb-2008,
indole-3-acetate degradation VII on 14-Feb-2008,
alizarin biosynthesis on 13-Feb-2008,
lawsone biosynthesis on 13-Feb-2008,
xylan biosynthesis on 13-Feb-2008,
indole-3-acetate degradation VI on 12-Feb-2008,
juglone biosynthesis on 12-Feb-2008,
maysin biosynthesis on 11-Feb-2008,
indole-3-acetate degradation V on 07-Feb-2008,
indole-3-acetate conjugate biosynthesis II on 05-Feb-2008,
rotenoid biosynthesis I on 18-Jan-2008,
saponin biosynthesis IV on 15-Jan-2008,
gossypol biosynthesis on 15-Jan-2008,
saponin biosynthesis II on 04-Jan-2008,
piperine biosynthesis on 21-Dec-2007,
vestitol and sativan biosynthesis on 28-Nov-2007,
Rubisco shunt on 20-Nov-2007,
superpathway of formononetin derivative biosynthesis on 19-Nov-2007,
shikonin biosynthesis on 07-Nov-2007,
aliphatic glucosinolate biosynthesis, side chain elongation cycle on 07-May-2007,
podophyllotoxin and 6-methoxypodophyllotoxin biosynthesis on 16-Feb-2007,
superpathway of hydrolyzable tannin biosynthesis on 16-Feb-2007,
gallotannin biosynthesis on 12-Feb-2007,
cornusiin E biosynthesis on 09-Feb-2007,
pentagalloylglucose biosynthesis on 07-Feb-2007,
hydroxycinnamic acid tyramine amides biosynthesis on 06-Feb-2007,
hydroxycinnamic acid serotonin amides biosynthesis on 05-Feb-2007,
bisbenzylisoquinoline alkaloid biosynthesis on 01-Feb-2007,
palmatine biosynthesis on 01-Feb-2007,
sesamin biosynthesis on 31-Jan-2007,
lupanine biosynthesis on 31-Jan-2007,
gramine biosynthesis on 31-Jan-2007,
matairesinol biosynthesis on 31-Jan-2007,
superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle on 23-Jan-2007,
betanidin degradation on 19-Jan-2007,
S-methyl-L-methionine cycle on 08-Jan-2007,
betacyanin biosynthesis (via dopamine) on 04-Jan-2007,
(3E)-4,8-dimethylnona-1,3,7-triene biosynthesis on 03-Jan-2007,
superpathway of lipoxygenase on 21-Dec-2006,
betaxanthin biosynthesis on 06-Dec-2006,
oleoresin sesquiterpene volatiles biosynthesis on 06-Dec-2006,
superpathway of oleoresin turpentine biosynthesis on 06-Dec-2006,
oleoresin monoterpene volatiles biosynthesis on 06-Dec-2006,
isopimaric acid biosynthesis on 05-Dec-2006,
dehydroabietic acid biosynthesis on 04-Dec-2006,
superpathway of diterpene resin acids biosynthesis on 04-Dec-2006,
palustric acid biosynthesis on 04-Dec-2006,
neoabietic acid biosynthesis on 04-Dec-2006,
levopimaric acid biosynthesis on 04-Dec-2006,
abietic acid biosynthesis on 30-Nov-2006,
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis on 29-Nov-2006,
divinyl ether biosynthesis II on 29-Nov-2006,
9-lipoxygenase and 9-hydroperoxide lyase pathway on 28-Nov-2006,
9-lipoxygenase and 9-allene oxide synthase pathway on 28-Nov-2006,
divinyl ether biosynthesis I on 28-Nov-2006,
superpathway of betalain biosynthesis on 27-Nov-2006,
betaxanthin biosynthesis (via dopaxanthin) on 27-Nov-2006,
betaxanthin biosynthesis (via dopamine) on 27-Nov-2006,
amaranthin biosynthesis on 27-Nov-2006,
betacyanin biosynthesis on 27-Nov-2006,
crocetin esters biosynthesis on 22-Nov-2006,
crocetin biosynthesis on 21-Nov-2006,
betalamic acid biosynthesis on 20-Nov-2006,
raspberry ketone biosynthesis on 09-Nov-2006,
syringetin biosynthesis on 03-Nov-2006,
rutin biosynthesis on 02-Nov-2006,
3-methylthiopropanoate biosynthesis on 27-Oct-2006,
N-glucosylnicotinate metabolism on 25-Oct-2006,
pyridine nucleotide cycling (plants) on 16-Oct-2006,
A series fagopyritols biosynthesis on 16-Oct-2006,
B series fagopyritols biosynthesis on 16-Oct-2006,
α-amyrin biosynthesis on 12-Oct-2006,
α-eleostearate biosynthesis on 10-Oct-2006,
punicate biosynthesis on 10-Oct-2006,
calendate biosynthesis on 10-Oct-2006,
chrysophanol biosynthesis on 09-Oct-2006,
dimorphecolate biosynthesis on 05-Oct-2006,
petroselinate biosynthesis on 05-Oct-2006,
palmitoleate biosynthesis II (plants and bacteria) on 05-Oct-2006,
linear furanocoumarin biosynthesis on 04-Oct-2006,
chrysin biosynthesis on 03-Oct-2006,
sapienate biosynthesis on 03-Oct-2006,
(5Z)-icosenoate biosynthesis on 02-Oct-2006,
arachidonate biosynthesis I (6-desaturase, lower eukaryotes) on 27-Sep-2006,
esculetin biosynthesis on 26-Sep-2006,
kaempferol triglucoside biosynthesis on 20-Sep-2006,
ajugose biosynthesis II (galactinol-independent) on 20-Sep-2006,
ajugose biosynthesis I (galactinol-dependent) on 20-Sep-2006,
chalcone 2'-O-glucoside biosynthesis on 19-Sep-2006,
galactosylcyclitol biosynthesis on 19-Sep-2006,
stachyose biosynthesis on 18-Sep-2006,
quercetin glycoside biosynthesis (Arabidopsis) on 08-Sep-2006,
kaempferol glycoside biosynthesis (Arabidopsis) on 08-Sep-2006,
coumarin metabolism (to melilotic acid) on 07-Sep-2006,
calystegine biosynthesis on 07-Sep-2006,
hyoscyamine and scopolamine biosynthesis on 07-Sep-2006,
nicotine biosynthesis on 07-Sep-2006,
superpathway of tetrahydroxyxanthone biosynthesis on 07-Sep-2006,
superpathway of rosmarinic acid biosynthesis on 07-Sep-2006,
N-methyl-Δ1-pyrrolinium cation biosynthesis on 07-Sep-2006,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside) on 07-Sep-2006,
superpathway of anthocyanin biosynthesis (from pelargonidin 3-O-glucoside) on 06-Sep-2006,
superpathway of anthocyanin biosynthesis (from delphinidin 3-O-glucoside) on 06-Sep-2006,
gentiodelphin biosynthesis on 30-Aug-2006,
bixin biosynthesis on 30-Aug-2006,
ajmaline and sarpagine biosynthesis on 28-Aug-2006,
ternatin C5 biosynthesis on 25-Aug-2006,
vindoline and vinblastine biosynthesis on 23-Aug-2006,
canthaxanthin biosynthesis on 23-Aug-2006,
astaxanthin biosynthesis (bacteria, fungi, algae) on 22-Aug-2006,
anthocyanidin sophoroside metabolism on 21-Aug-2006,
shisonin biosynthesis on 17-Aug-2006,
abscisic acid glucose ester metabolism on 28-Jul-2006,
phaseic acid biosynthesis on 28-Jul-2006,
morphine biosynthesis on 14-Jul-2006,
cardiolipin biosynthesis II on 12-Jul-2006,
salvianin biosynthesis on 12-Jul-2006,
soybean saponin I biosynthesis on 22-May-2006,
artemisinin biosynthesis on 15-May-2006,
coumarin biosynthesis (via 2-coumarate) on 11-May-2006,
ferulate and sinapate biosynthesis on 05-May-2006,
6'-deoxychalcone metabolism on 27-Apr-2006,
rose anthocyanin biosynthesis I (via cyanidin 5-O-β-D-glucoside) on 26-Apr-2006,
anthocyanin biosynthesis (delphinidin 3-O-glucoside) on 12-Apr-2006,
leucodelphinidin biosynthesis on 12-Apr-2006,
long-chain fatty acid activation on 27-Mar-2006,
pelargonidin conjugates biosynthesis on 10-Mar-2006,
unsaturated, even numbered fatty acid β-oxidation on 10-Mar-2006,
fatty acid β-oxidation III (unsaturated, odd number) on 10-Mar-2006,
fatty acid β-oxidation II (peroxisome) on 10-Mar-2006,
anthocyanin biosynthesis (cyanidin 3-O-glucoside) on 01-Mar-2006,
trans, trans-farnesyl diphosphate biosynthesis on 27-Feb-2006,
superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) on 24-Feb-2006,
geranylgeranyl diphosphate biosynthesis on 24-Feb-2006,
acacetin biosynthesis on 21-Feb-2006,
ponciretin biosynthesis on 21-Feb-2006,
sakuranetin biosynthesis on 21-Feb-2006,
trigonelline biosynthesis on 14-Feb-2006,
hesperitin glycoside biosynthesis on 08-Feb-2006,
naringenin glycoside biosynthesis on 01-Feb-2006,
NAD/NADH phosphorylation and dephosphorylation on 11-Jan-2006,
very long chain fatty acid biosynthesis I on 10-Jan-2006,
chlorophyll cycle on 15-Dec-2005,
6,7,4'-trihydroxyisoflavone biosynthesis on 05-Dec-2005,
luteolin biosynthesis on 05-Dec-2005,
pinobanksin biosynthesis on 05-Dec-2005,
rosmarinic acid biosynthesis II on 30-Nov-2005,
rosmarinic acid biosynthesis I on 30-Nov-2005,
pinosylvin metabolism on 22-Nov-2005,
phylloquinol biosynthesis on 03-Nov-2005,
resveratrol biosynthesis on 19-Oct-2005,
pentaketide chromone biosynthesis on 19-Oct-2005,
coniferin metabolism on 14-Oct-2005,
monolignol glucosides biosynthesis on 14-Oct-2005,
superpathway of isoflavonoids (via naringenin) on 13-Oct-2005,
superpathway of pterocarpan biosynthesis (via formononetin) on 13-Oct-2005,
superpathway of pterocarpan biosynthesis (via daidzein) on 13-Oct-2005,
tetrahydroxyxanthone biosynthesis (from 3-hydroxybenzoate) on 29-Sep-2005,
tetrahydroxyxanthone biosynthesis (from benzoate) on 29-Sep-2005,
6-methoxymellein biosynthesis on 21-Sep-2005,
aloesone biosynthesis I on 13-Sep-2005,
superpathway of choline biosynthesis on 09-Sep-2005,
kievitone biosynthesis on 07-Sep-2005,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) on 07-Sep-2005,
wighteone and luteone biosynthesis on 31-Aug-2005,
curcumin glucoside biosynthesis on 29-Aug-2005,
fatty acid biosynthesis initiation I on 19-Aug-2005,
L-glutamate biosynthesis V on 17-Aug-2005,
volatile benzenoid biosynthesis I (ester formation) on 09-Aug-2005,
volatile cinnamoic ester biosynthesis on 09-Aug-2005,
uracil degradation I (reductive) on 30-Jun-2005,
folate transformations II on 14-Jun-2005,
choline biosynthesis III on 05-May-2005,
choline biosynthesis II on 05-May-2005,
choline biosynthesis I on 18-Apr-2005,
sinapate ester biosynthesis on 06-Apr-2005,
flavonol biosynthesis on 15-Mar-2005,
phaseollin biosynthesis on 08-Mar-2005,
formononetin conjugates interconversion on 15-Feb-2005,
biochanin A conjugates interconversion on 14-Feb-2005,
glyceollin biosynthesis II on 04-Feb-2005,
glyceollin biosynthesis I on 04-Feb-2005,
maackiain conjugates interconversion on 28-Jan-2005,
medicarpin conjugates interconversion on 24-Jan-2005,
pisatin biosynthesis on 18-Jan-2005,
maackiain biosynthesis on 18-Jan-2005,
medicarpin biosynthesis on 18-Jan-2005,
daidzein conjugates interconversion on 18-Nov-2004,
formononetin biosynthesis on 17-Nov-2004,
free phenylpropanoid acid biosynthesis on 05-Nov-2004,
isoflavonoid biosynthesis II on 06-Oct-2004,
indole-3-acetate degradation IV on 29-Sep-2004,
isoflavonoid biosynthesis I on 29-Sep-2004,
aurone biosynthesis on 20-Sep-2004,
plastoquinol-9 biosynthesis I on 19-Jul-2004,
vitamin E biosynthesis (tocopherols) on 15-Apr-2004,
L-methionine biosynthesis II on 05-Feb-2003,
chlorophyllide a biosynthesis I (aerobic, light-dependent) on 10-Sep-2002,
superpathway of carotenoid biosynthesis on 10-Sep-2002,
phenylpropanoid biosynthesis, initial reactions on 01-Jul-2002,
leucopelargonidin and leucocyanidin biosynthesis on 01-Jul-2002,
photosynthesis light reactions on 26-Apr-2002

sucrose biosynthesis I (from photosynthesis) on 15-Feb-2011,
plant sterol biosynthesis on 20-Jan-2011,
vindoline and vinblastine biosynthesis on 07-Jan-2011,
(3E)-4,8-dimethylnona-1,3,7-triene biosynthesis on 07-Dec-2010,
sorgoleone biosynthesis on 12-Apr-2010,
superpathway of thiamine diphosphate biosynthesis III (eukaryotes) on 18-Dec-2008,
cutin biosynthesis on 17-Oct-2008,
proanthocyanidin biosynthesis from flavanols on 05-Sep-2008,
betaxanthin biosynthesis (via dopamine) on 11-Apr-2008,
isoflavonoid biosynthesis II on 11-Feb-2008,
indole-3-acetate degradation IV on 08-Feb-2008,
glycolysis IV (plant cytosol) on 26-Jan-2007,
superpathway of phospholipid biosynthesis II (plants) on 09-Jan-2007,
jasmonic acid biosynthesis on 19-Dec-2006,
leucopelargonidin and leucocyanidin biosynthesis on 02-Oct-2006,
UDP-L-rhamnose biosynthesis on 30-Aug-2006,
superpathway of carotenoid biosynthesis on 28-Jul-2006,
abscisic acid biosynthesis on 28-Jul-2006

CO2 fixation into oxaloacetate (anaplerotic) on 24-Oct-2007,
UMP biosynthesis on 24-Oct-2007,
superpathway of thiamine diphosphate biosynthesis III (eukaryotes) on 26-Jul-2007,
reactive oxygen species degradation on 30-Nov-2006,
superoxide radicals degradation on 30-Nov-2006,
L-citrulline degradation on 10-Nov-2006,
glutathione biosynthesis on 08-Nov-2006,
coenzyme A biosynthesis II (mammalian) on 24-Oct-2006,
coenzyme A biosynthesis I on 24-Oct-2006,
NAD biosynthesis I (from aspartate) on 14-Oct-2006

Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by Pathway Tools version 19.5 (software by SRI International) on Sun May 1, 2016, biocyc14.