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discounted EARLY registration ends Dec 31, 2014
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discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
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for maintenance.
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discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
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discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
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MetaCyc Pathway: 4-chlorocatechol degradation

Enzyme View:

This view shows enzymes only for those organisms listed below, in the list of taxa known to possess the pathway. If an enzyme name is shown in bold, there is experimental evidence for this enzymatic activity.

Superclasses: Degradation/Utilization/Assimilation Aromatic Compounds Degradation Chloroaromatic Compounds Degradation Chlorocatechol Degradation
Degradation/Utilization/Assimilation Chlorinated Compounds Degradation Chloroaromatic Compounds Degradation Chlorocatechol Degradation

Some taxa known to possess this pathway include ? : Pseudomonas knackmussii , Pseudomonas putida AC866 , Pseudomonas sp. P51 , Ralstonia eutropha JMP134

Expected Taxonomic Range: Bacteria

Summary:
Chloroaromatic compounds occur in the environment in large amounts due to their release as herbicides or as byproducts of industrial production. These compounds are stable chemically, and biological degradation capabilities have evolved only recently as a response to their widespread availability in soil and water.

Many of the degradation pathways merge at the level of chlorocatechols.Often organisms that can degrade non-chlorinated aromatic compounds (such as benzoate) can convert the chlorinated vatiants to the level of chlorocatechols, due to enzyme promiscuity [Spokes74]. However, the enzymes that degrade catechol have little activity with chloro-substituted compounds, and the chlorocatechols that accumulate as a result are toxic to the bacteria. Thus, in order to be able to degrade chlorobenzoates and chlorobenzenes successfully, the bacteria must possess specific enzymes for the degradation of chlorocatechols.

The first bacterium that was isolated based on its ability to grow with 3-chlorobenzoate as the sole carbon source was Pseudomonas knackmussii (then called Pseudomonas sp. strain B13) [Dorn74]. That study showed that 3-chlorobenzoate was converted by two enzymes to a mixture of 3-chlorocatechol and 4-chlorocatechol [Dorn74, Weisshaar87]. The chlorinated catechols were degraded in a modified ortho cleavage pathways via 2-maleylacetate to 3-oxoadipate, which was degraded further to TCA cycle intermediates.

This pathway for 4-chlorocatechol degradation starts with a dioxygenase attack, resulting in 3-chloro-cis,cis-muconate. The "regular" catechol 1,2 dioxygenases have little activity with chlorocatechol. Instead, chlorocatechols are substrates to specialized enzymes that evolved for this purpose, known as "type II" enzymes. The next enzyme, chloromuconate cycloisomerase, catalyzes a single reaction that converts the chloromuconate directly to cis-dienelactone [Kaulmann01]. The reaction includes the removal of the chloride residue. Two last steps, catalyzed by a hydrolase and a reductase, generate the common intermediate 3-oxoadipate.

Most of the genes encoding chlorocatechol catabolism enzymes are present on plasmids. Examples include the two tdf operons on the Ralstonia eutropha JMP134 plasmid pJP4 [Don85], the clc operon on the Pseudomonas knackmussii plasmid pB13 (pWR1) [Chatterjee81], and the tcb operon on the Pseudomonas sp. P51 plasmid pP51 [vanderMeer91].

In bacteria that lack chloromuconate cycloisomerase formation of 4-chlorocatechol leads to accute toxicity. Apparently 3-chloro-cis,cis-muconate can be converted by the regular, chromosomally-encoded muconate cycloisomerase to the toxic antibiotic protoanemonin via the following reactions:

(+)-4-chloromuconolactone ← 3-chloro-cis,cis-muconate + H+ (+)-4-chloromuconolactone → protoanemonin + chloride + CO2

Accumulation of protoanemonin leads to cell death [Blasco95].

Credits:
Created 11-Nov-2008 by Caspi R , SRI International


References

Blasco95: Blasco R, Wittich RM, Mallavarapu M, Timmis KN, Pieper DH (1995). "From xenobiotic to antibiotic, formation of protoanemonin from 4-chlorocatechol by enzymes of the 3-oxoadipate pathway." J Biol Chem 270(49);29229-35. PMID: 7493952

Chatterjee81: Chatterjee DK, Kellogg ST, Hamada S, Chakrabarty AM (1981). "Plasmid specifying total degradation of 3-chlorobenzoate by a modified ortho pathway." J Bacteriol 146(2);639-46. PMID: 7217013

Don85: Don RH, Weightman AJ, Knackmuss HJ, Timmis KN (1985). "Transposon mutagenesis and cloning analysis of the pathways for degradation of 2,4-dichlorophenoxyacetic acid and 3-chlorobenzoate in Alcaligenes eutrophus JMP134(pJP4)." J Bacteriol 161(1);85-90. PMID: 2981813

Dorn74: Dorn E, Hellwig M, Reineke W, Knackmuss HJ (1974). "Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad." Arch Microbiol 99(1);61-70. PMID: 4852581

Gaillard06: Gaillard M, Vallaeys T, Vorholter FJ, Minoia M, Werlen C, Sentchilo V, Puhler A, van der Meer JR (2006). "The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties." J Bacteriol 188(5);1999-2013. PMID: 16484212

Kaulmann01: Kaulmann U, Kaschabek SR, Schlomann M (2001). "Mechanism of chloride elimination from 3-chloro- and 2,4-dichloro-cis,cis-muconate: new insight obtained from analysis of muconate cycloisomerase variant CatB-K169A." J Bacteriol 183(15);4551-61. PMID: 11443090

Spokes74: Spokes JR, Walker N (1974). "Chlorophenol and chlorobenzoic acid co-metabolism by different genera of soil bacteria." Arch Mikrobiol 96(2);125-34. PMID: 4836257

vanderMeer91: van der Meer JR, van Neerven AR, de Vries EJ, de Vos WM, Zehnder AJ (1991). "Cloning and characterization of plasmid-encoded genes for the degradation of 1,2-dichloro-, 1,4-dichloro-, and 1,2,4-trichlorobenzene of Pseudomonas sp. strain P51." J Bacteriol 173(1);6-15. PMID: 1987135

Weisshaar87: Weisshaar MP, Franklin FC, Reineke W (1987). "Molecular cloning and expression of the 3-chlorobenzoate-degrading genes from Pseudomonas sp. strain B13." J Bacteriol 169(1);394-402. PMID: 3025183

Other References Related to Enzymes, Genes, Subpathways, and Substrates of this Pathway

Broderick91: Broderick JB, O'Halloran TV (1991). "Overproduction, purification, and characterization of chlorocatechol dioxygenase, a non-heme iron dioxygenase with broad substrate tolerance." Biochemistry 30(29);7349-58. PMID: 1649626

Cai02: Cai M, Xun L (2002). "Organization and regulation of pentachlorophenol-degrading genes in Sphingobium chlorophenolicum ATCC 39723." J Bacteriol 184(17);4672-80. PMID: 12169590

Camara07: Camara B, Bielecki P, Kaminski F, dos Santos VM, Plumeier I, Nikodem P, Pieper DH (2007). "A gene cluster involved in degradation of substituted salicylates via ortho cleavage in Pseudomonas sp. strain MT1 encodes enzymes specifically adapted for transformation of 4-methylcatechol and 3-methylmuconate." J Bacteriol 189(5);1664-74. PMID: 17172348

Chatterjee83: Chatterjee DK, Chakrabarty AM (1983). "Genetic homology between independently isolated chlorobenzoate-degradative plasmids." J Bacteriol 153(1);532-4. PMID: 6294059

Daubaras96: Daubaras DL, Saido K, Chakrabarty AM (1996). "Purification of hydroxyquinol 1,2-dioxygenase and maleylacetate reductase: the lower pathway of 2,4,5-trichlorophenoxyacetic acid metabolism by Burkholderia cepacia AC1100." Appl Environ Microbiol 62(11);4276-9. PMID: 8900023

Endo05: Endo R, Kamakura M, Miyauchi K, Fukuda M, Ohtsubo Y, Tsuda M, Nagata Y (2005). "Identification and characterization of genes involved in the downstream degradation pathway of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis UT26." J Bacteriol 187(3);847-53. PMID: 15659662

Frantz87: Frantz B, Chakrabarty AM (1987). "Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation." Proc Natl Acad Sci U S A 84(13);4460-4. PMID: 3299368

Frantz87a: Frantz B, Ngai KL, Chatterjee DK, Ornston LN, Chakrabarty AM (1987). "Nucleotide sequence and expression of clcD, a plasmid-borne dienelactone hydrolase gene from Pseudomonas sp. strain B13." J Bacteriol 169(2);704-9. PMID: 3804974

Ghosal89: Ghosal D, You IS (1989). "Operon structure and nucleotide homology of the chlorocatechol oxidation genes of plasmids pJP4 and pAC27." Gene 83(2);225-32. PMID: 2583528

Halak07: Halak S, Basta T, Burger S, Contzen M, Wray V, Pieper DH, Stolz A (2007). "4-sulfomuconolactone hydrolases from Hydrogenophaga intermedia S1 and Agrobacterium radiobacter S2." J Bacteriol 189(19);6998-7006. PMID: 17660282

Kasberg95: Kasberg T, Daubaras DL, Chakrabarty AM, Kinzelt D, Reineke W (1995). "Evidence that operons tcb, tfd, and clc encode maleylacetate reductase, the fourth enzyme of the modified ortho pathway." J Bacteriol 177(13);3885-9. PMID: 7601858

Kasberg97: Kasberg T, Seibert V, Schlomann M, Reineke W (1997). "Cloning, characterization, and sequence analysis of the clcE gene encoding the maleylacetate reductase of Pseudomonas sp. strain B13." J Bacteriol 179(11);3801-3. PMID: 9171435

Kaschabek92: Kaschabek SR, Reineke W (1992). "Maleylacetate reductase of Pseudomonas sp. strain B13: dechlorination of chloromaleylacetates, metabolites in the degradation of chloroaromatic compounds." Arch Microbiol 158(6);412-7. PMID: 1482270

Kaschabek93: Kaschabek SR, Reineke W (1993). "Degradation of chloroaromatics: purification and characterization of maleylacetate reductase from Pseudomonas sp. strain B13." J Bacteriol 175(19);6075-81. PMID: 8407778

Kuhm90: Kuhm AE, Schlomann M, Knackmuss HJ, Pieper DH (1990). "Purification and characterization of dichloromuconate cycloisomerase from Alcaligenes eutrophus JMP 134." Biochem J 266(3);877-83. PMID: 2327971

Laemmli02: Laemmli CM, Schonenberger R, Suter M, Zehnder AJ, van der Meer JR (2002). "TfdD(II), one of the two chloromuconate cycloisomerases of Ralstonia eutropha JMP134 (pJP4), cannot efficiently convert 2-chloro- cis, cis-muconate to trans-dienelactone to allow growth on 3-chlorobenzoate." Arch Microbiol 178(1);13-25. PMID: 12070765

Latendresse13: Latendresse M. (2013). "Computing Gibbs Free Energy of Compounds and Reactions in MetaCyc."

Mattozzi10: Mattozzi Mde L, Keasling JD (2010). "Rationally engineered biotransformation of p-nitrophenol." Biotechnol Prog 26(3);616-21. PMID: 20196144

Matus03: Matus V, Sanchez MA, Martinez M, Gonzalez B (2003). "Efficient degradation of 2,4,6-Trichlorophenol requires a set of catabolic genes related to tcp genes from Ralstonia eutropha JMP134(pJP4)." Appl Environ Microbiol 69(12);7108-15. PMID: 14660355

Moiseeva01: Moiseeva OV, Belova OV, Solyanikova IP, Schlomann M, Golovleva LA (2001). "Enzymes of a new modified ortho-pathway utilizing 2-chlorophenol in Rhodococcus opacus 1CP." Biochemistry (Mosc) 66(5);548-55. PMID: 11405892

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Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Sat Dec 20, 2014, BIOCYC13B.