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MetaCyc Pathway: superpathway of alliin degradation

If an enzyme name is shown in bold, there is experimental evidence for this enzymatic activity.

Superclasses: Degradation/Utilization/Assimilation Secondary Metabolites Degradation Nitrogen Containing Secondary Compounds Degradation
Superpathways

Some taxa known to possess this pathway include ? : Allioideae

Expected Taxonomic Range: cellular organisms

Summary:
Plants belonging to Allioideae, have been valued both for flavor and medicinal purposes through out the world. Uncrushed whole garlic bulbs contain cysteine sulfoxides and γ-glutamylcysteines as the major organosulfur compounds, in equal amounts. The odorless non protein alliin is the substrate which is acted upon by the allinase enzyme [Van92]. In garlic, the enzyme and substrate are compartmentalized in the bundle sheaths of the clove and cell cytoplasm respectively [Ellmore94][Shimon07]. The characteristic pungent odor is emitted only when the tissue is crushed and the enzyme binds to the substrate.

The degradation of allium organosulphur compounds occurs mainly in bulbs and the allinase enzyme has been purified from bulbs as well as leaves and also from a number of other plants including Acacia and Brassicaceae members [Van92]. Allinases are now reported from a wide variety of organisms including bacteria and fungi [Rössner02]. The variety and composition of organosulfur compounds in Allium is explained by the kinetics of cysteine sulfoxide hydrolysis and the reactivity of the initial sulfenic acids [Rose05]. The allinase of Allium sativum accumulates S-alkyl and S-2-propenyl (allyl) derivatives but not S-1-propenyl derivative [Manabe98].

Allinases require pyridoxal 5'-phosphate as a cofactor, after binding alliin it is converted to allylsulfenate [Shimon07], which reacts spontaneously to form allicin, a parent compound of a number of other sulfur-containing compounds such as thiosulfinates, allyl sulfides, dithiines and ajoenes [Shimon07]. The biosynthesis of the flavor precursor alliin is still not completely understood [Jones04] although, there are proposed pathways with partial experimental proof . Hence, currently only the degradation of the alliin [Hughes05] is shown here.

This superpathway includes all the different alliin degradtion.

Subpathways: alliin degradation , ethiin degradation , isoalliin degradation

Credits:
Created 24-Mar-2009 by Pujar A , Boyce Thompson Institute


References

Ellmore94: Ellmore, G.S, Feldberg, R.S (1994). "Alliin lyase localization in bundle sheaths of the garlic clove (Allium sativum)." American Journal of Botany, 81, 89-94.

Hughes05: Hughes J, Tregova A, Tomsett AB, Jones MG, Cosstick R, Collin HA (2005). "Synthesis of the flavour precursor, alliin, in garlic tissue cultures." Phytochemistry 66(2);187-94. PMID: 15652575

Jones04: Jones MG, Hughes J, Tregova A, Milne J, Tomsett AB, Collin HA (2004). "Biosynthesis of the flavour precursors of onion and garlic." J Exp Bot 55(404);1903-18. PMID: 15234988

Manabe98: Manabe T, Hasumi A, Sugiyama M, Yamazaki M, Saito K (1998). "Alliinase [S-alk(en)yl-L-cysteine sulfoxide lyase] from Allium tuberosum (Chinese chive)--purification, localization, cDNA cloning and heterologous functional expression." Eur J Biochem 257(1);21-30. PMID: 9799098

Rose05: Rose P, Whiteman M, Moore PK, Zhu YZ (2005). "Bioactive S-alk(en)yl cysteine sulfoxide metabolites in the genus Allium: the chemistry of potential therapeutic agents." Nat Prod Rep 22(3);351-68. PMID: 16010345

Rössner02: Rössner, Jan, Kubec, R, Velísˇek. J, Davídek, J (2002). "Formation of aldehydes from S-alk(en)ylcysteines and their sulfoxides." Eur Food Res Technol 215:124-130.

Shimon07: Shimon LJ, Rabinkov A, Shin I, Miron T, Mirelman D, Wilchek M, Frolow F (2007). "Two structures of alliinase from Alliium sativum L.: apo form and ternary complex with aminoacrylate reaction intermediate covalently bound to the PLP cofactor." J Mol Biol 366(2);611-25. PMID: 17174334

Van92: Van Damme EJ, Smeets K, Torrekens S, Van Leuven F, Peumans WJ (1992). "Isolation and characterization of alliinase cDNA clones from garlic (Allium sativum L.) and related species." Eur J Biochem 209(2);751-7. PMID: 1385120

Other References Related to Enzymes, Genes, Subpathways, and Substrates of this Pathway

Imai02: Imai S, Tsuge N, Tomotake M, Nagatome Y, Sawada H, Nagata T, Kumagai H (2002). "Plant biochemistry: an onion enzyme that makes the eyes water." Nature 419(6908);685. PMID: 12384686

Lancaster00: Lancaster JE, Shaw ML, Joyce MD, McCallum JA, McManus MT (2000). "A novel alliinase from onion roots. Biochemical characterization and cDNA cloning." Plant Physiol 122(4);1269-79. PMID: 10759524

Latendresse13: Latendresse M. (2013). "Computing Gibbs Free Energy of Compounds and Reactions in MetaCyc."

Ohsumi93: Ohsumi, C, Hayashi, T, Sano, K (1993). "Formation of alliin in the culture tissues of Allium sativum. oxidation of S-Allyl-L-Cysteine." Phytochemistry, 33,1,107-111.

Rabinkov94: Rabinkov A, Zhu XZ, Grafi G, Galili G, Mirelman D (1994). "Alliin lyase (Alliinase) from garlic (Allium sativum). Biochemical characterization and cDNA cloning." Appl Biochem Biotechnol 48(3);149-71. PMID: 7979352

Selby80: Selby, C, Turnbull, A, Collin, H. A (1980). "Comparison of the onion plant (Allium cepa) and onion tissue culture. II. Stimultaion of flavour precursor synthesis in onion tissue cultures." New Phytol. 84, 307-312.


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Wed Nov 26, 2014, biocyc13.