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discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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MetaCyc Pathway: valine biosynthesis

Enzyme View:

This view shows enzymes only for those organisms listed below, in the list of taxa known to possess the pathway. If an enzyme name is shown in bold, there is experimental evidence for this enzymatic activity.

Superclasses: Biosynthesis Amino Acids Biosynthesis Individual Amino Acids Biosynthesis Valine Biosynthesis

Some taxa known to possess this pathway include ? : Escherichia coli K-12 substr. MG1655 , Methanococci , Methanococcus , Methanococcus aeolicus , Methanococcus maripaludis , Methanococcus voltae , Ralstonia eutropha H16

Expected Taxonomic Range: Archaea , Bacteria , Eukaryota

Summary:
The pathway of valine biosynthesis is a four-step pathway that shares all of its steps with the parallel pathway of isoleucine biosynthesis. These entwined pathways are part of the superpathway of leucine, valine, and isoleucine biosynthesis, that generates not only isoleucine and valine, but also leucine.

As a consequence of having several of its component enzymes involved in the synthesis of three different amino acids, the pathway of isoleucine biosynthesis is subject to regulation by all three amino acids. The first step in the pathway is primarily inhibited by valine, along with inhibition by isoleucine and leucine. The potential disruption this might cause to the parallel isoleucine biosynthesis pathway step using the same enzymes is resolved by upregulation of an earlier step that is unique to isoleucine biosynthesis, as explained in the isoleucine biosynthesis I (from threonine) summary. In this way, valine biosynthesis can be regulated independently of isoleucine biosynthesis, despite all four valine biosynthesis enzymes also participating in isoleucine biosynthesis.

Citations: [Neidhardt96]

Superpathways: superpathway of leucine, valine, and isoleucine biosynthesis

Unification Links: EcoCyc:VALSYN-PWY

Credits:
Created 02-Feb-1994 by Riley M , Marine Biological Laboratory
Last-Curated ? 08-Nov-2007 by Shearer A , SRI International


References

Chunduru89: Chunduru SK, Mrachko GT, Calvo KC (1989). "Mechanism of ketol acid reductoisomerase--steady-state analysis and metal ion requirement." Biochemistry 28(2);486-93. PMID: 2653423

Flint93b: Flint DH, Emptage MH, Finnegan MG, Fu W, Johnson MK (1993). "The role and properties of the iron-sulfur cluster in Escherichia coli dihydroxy-acid dehydratase." J Biol Chem 1993;268(20);14732-42. PMID: 8325851

Gollop89: Gollop N, Damri B, Barak Z, Chipman DM (1989). "Kinetics and mechanism of acetohydroxy acid synthase isozyme III from Escherichia coli." Biochemistry 28(15);6310-7. PMID: 2675968

LeePeng79: Lee-Peng FC, Hermodson MA, Kohlhaw GB (1979). "Transaminase B from Escherichia coli: quaternary structure, amino-terminal sequence, substrate specificity, and absence of a separate valine-alpha-ketoglutarate activity." J Bacteriol 1979;139(2);339-45. PMID: 378964

Neidhardt96: Neidhardt FC, Curtiss III R, Ingraham JL, Lin ECC, Low Jr KB, Magasanik B, Reznikoff WS, Riley M, Schaechter M, Umbarger HE "Escherichia coli and Salmonella, Cellular and Molecular Biology, Second Edition." American Society for Microbiology, Washington, D.C., 1996.

Vinogradov06: Vinogradov V, Vyazmensky M, Engel S, Belenky I, Kaplun A, Kryukov O, Barak Z, Chipman DM (2006). "Acetohydroxyacid synthase isozyme I from Escherichia coli has unique catalytic and regulatory properties." Biochim Biophys Acta 1760(3);356-63. PMID: 16326011

Other References Related to Enzymes, Genes, Subpathways, and Substrates of this Pathway

Aarnes81: Aarnes H. "Branched chain amino acid aminotransferase in barley seedlings." Z. Pflanzenphysiol. (1981) 102 : 81-89.

Adelberg53: Adelberg EA, Umbarger HE (1953). "Isoleucine and valine metabolism in Escherichia coli. V. alpha-Ketoisovaleric acid accumulation." J Biol Chem 205(1);475-82. PMID: 13117924

Altmiller70: Altmiller DH, Wagner RP (1970). "Purification and properties of dihydroxy acid dehydratase from soluble and mitochondrial fractions of Neurospora crassa." Arch Biochem Biophys 138(1);160-70. PMID: 4986563

Andersen01: Andersen DC, Swartz J, Ryll T, Lin N, Snedecor B (2001). "Metabolic oscillations in an E. coli fermentation." Biotechnol Bioeng 75(2);212-8. PMID: 11536144

Aulabaugh90: Aulabaugh A, Schloss JV (1990). "Oxalyl hydroxamates as reaction-intermediate analogues for ketol-acid reductoisomerase." Biochemistry 29(11);2824-30. PMID: 2189496

Barak87: Barak Z, Chipman DM, Gollop N (1987). "Physiological implications of the specificity of acetohydroxy acid synthase isozymes of enteric bacteria." J Bacteriol 169(8);3750-6. PMID: 3301814

Barak88: Barak Z, Calvo JM, Schloss JV (1988). "Acetolactate synthase isozyme III from Escherichia coli." Methods Enzymol 1988;166;455-8. PMID: 3071721

Bowen97: Bowen TL, Union J, Tumbula DL, Whitman WB (1997). "Cloning and phylogenetic analysis of the genes encoding acetohydroxyacid synthase from the archaeon Methanococcus aeolicus." Gene 188(1);77-84. PMID: 9099862

Brown78: Brown OR, Yein F (1978). "Dihydroxyacid dehydratase: the site of hyperbaric oxygen poisoning in branch-chain amino acid biosynthesis." Biochem Biophys Res Commun 85(3);1219-24. PMID: 367373

Burns95: Burns DM, Burger MJ, Beacham IR (1995). "Silent genes in bacteria: the previously designated 'cryptic' ilvHI locus of 'Salmonella typhimurium LT2' is active in natural isolates." FEMS Microbiol Lett 131(2);167-72. PMID: 7557326

Dailey86: Dailey FE, Cronan JE (1986). "Acetohydroxy acid synthase I, a required enzyme for isoleucine and valine biosynthesis in Escherichia coli K-12 during growth on acetate as the sole carbon source." J Bacteriol 1986;165(2);453-60. PMID: 3511034

Daniels92: Daniels DL, Plunkett G, Burland V, Blattner FR (1992). "Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes." Science 1992;257(5071);771-8. PMID: 1379743

De74: De Felice M, Guardiola J, Esposito B, Iaccarino M (1974). "Structural genes for a newly recognized acetolactate synthase in Escherichia coli K-12." J Bacteriol 120(3);1068-77. PMID: 4612003

De78: De Felice M, Squires C, Levinthal M (1978). "A comparative study of the acetohydroxy acid synthase isoenzymes of Escherichia coli K-12." Biochim. Biophys. Acta 541;9-17.

deFelice78: de Felice M, Squires C, Levinthal M "A comparative study of the acetohydroxy acid synthase isoenzymes of Escherichia coli K-12." BBA 1978;541:9-17.

DiazMejia09: Diaz-Mejia JJ, Babu M, Emili A (2009). "Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome." FEMS Microbiol Rev 33(1);66-97. PMID: 19054114

Duan09: Duan X, Yang J, Ren B, Tan G, Ding H (2009). "Reactivity of nitric oxide with the [4Fe-4S] cluster of dihydroxyacid dehydratase from Escherichia coli." Biochem J 417(3);783-9. PMID: 18945212

Dumas01: Dumas R, Biou V, Halgand F, Douce R, Duggleby RG (2001). "Enzymology, structure, and dynamics of acetohydroxy acid isomeroreductase." Acc Chem Res 34(5);399-408. PMID: 11352718

Eden96: Eden A, Simchen G, Benvenisty N (1996). "Two yeast homologs of ECA39, a target for c-Myc regulation, code for cytosolic and mitochondrial branched-chain amino acid aminotransferases." J Biol Chem 271(34);20242-5. PMID: 8702755

Engel04: Engel S, Vyazmensky M, Berkovich D, Barak Z, Chipman DM (2004). "Substrate range of acetohydroxy acid synthase I from Escherichia coli in the stereoselective synthesis of alpha-hydroxy ketones." Biotechnol Bioeng 88(7);825-31. PMID: 15558598

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Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Thu Dec 18, 2014, BIOCYC14B.