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MetaCyc Polypeptide: hydrogenase b-type cytochrome subunit

Gene: hoxZ Accession Number: G-9708 (MetaCyc)

Species: Cupriavidus necator

Component of: [NiFe]-hydrogenase (membrane bound) (extended summary available)

Summary:
This subunit is a dual function b-type cytochrome. It works as a membrane anchor and as a redox center [Bernhard97].

Gene Citations: [Kortluke92]

Molecular Weight of Polypeptide: 27.581 kD (from nucleotide sequence)

Unification Links: Protein Model Portal:P31898 , String:381666.PHG003 , UniProt:P31898

Relationship Links: Entrez-Nucleotide:PART-OF:M96433 , InterPro:IN-FAMILY:IPR000516 , InterPro:IN-FAMILY:IPR016174 , Pfam:IN-FAMILY:PF00033 , Prints:IN-FAMILY:PR00161 , Prosite:IN-FAMILY:PS00882 , Prosite:IN-FAMILY:PS00883

Gene-Reaction Schematic: ?


Subunit of: [NiFe]-hydrogenase (membrane bound)

Species: Cupriavidus necator

Subunit composition of [NiFe]-hydrogenase (membrane bound) = [HoxZ][HoxK][HoxG]
         hydrogenase b-type cytochrome subunit = HoxZ (summary available)
         hydrogenase small subunit = HoxK (summary available)
         hydrogenase large subunit = HoxG (summary available)

Summary:
General Background

Hydrogenases are responsible for the reversible oxidation of H2 to two protons (in the reverse direction, the enzyme catalyzes the reduction of protons resulting in molecular hydrogen production).

Most hydrogenases are metalloenzymes that contain iron-sulfur clusters. They have been subdivided into two main classes based on the composition of two metal atoms at their active center: [NiFe]-hydrogenases and [FeFe]-hydrogenases. These two classes are phylogenetically distinct. It should be noted that in some of the [NiFe]-hydrogenases one of the Ni-bound cysteine residues is replaced by selenocysteine. Those enzymes are known as [NiFeSe]-hydrogenases.

In addition, a third class of hydrogenases is found in some methanogenic archaea. These enzymes contain only a mononuclear Fe active site and no iron-sulfur clusters, and are known as [Fe]-hydrogenases.

The catalytic core of [NiFe]-hydrogenases is a heterodimeric protein, which is often associated with additional subunits. The catalytic core of [FeFe]-hydrogenases is a single domain of about 350 residues that accommodates the active site, known as the H cluster. Many [FeFe]-hydrogenases are monomeric but possess additional domains that contain redox centers, mostly Fe-S clusters.

About This Enzyme

Cupriavidus necator is capable of growth on hydrogen as the sole energy source. This organism is unique, since it contains three different kinds of NiFe-type hydrogenases, two of which produce energy, while the third one regulates the production of the other two [Kleihues00]. One of the energy-producing hydrogenases (this enzyme) is membrane-bound (MBH) and couples H2 oxidation to electron transport-dependent phosphorylation via an integral membrane-bound subunit, which is a b-type cytochrome. The other catalytic hydrogenase is cytoplasmic and transfers electrons directly to NAD, generating reducing equivalents (see [NiFe]-hydrogenase (soluble)).

The membrane-bound enzyme is a heterotrimer, composed of a catalytic heterodimer and a membrane-integral cytochrome b third unit, which is involved in both anchoring the complex to the membrane and the transfer of electrons from the complex to a quinone [Bernhard97]. The enzyme contains Ni2+ and iron-sulfur, the precise nature of which has not been determined [Schink79].

The MBH operon comprises 10 MBH-specific genes in addition to a set of accessory genes whose products are involved in the complex posttranslational maturation of the hydrogenases and the regulation of both catalytic hydrogenases [Bernhard96].

Locations: inner membrane

GO Terms:

Cellular Component: GO:0005886 - plasma membrane

Credits:
Created 09-Aug-1999 by Pellegrini-Toole A , Marine Biological Laboratory
Revised 19-Oct-2006 by Caspi R , SRI International


Enzymatic reaction of: hydrogenase

Synonyms: uptake hydrogenase, membrane-bound hydrogenase, MBH, hydrogenlyase, ferredoxin:H+ oxidoreductase, hydrogenase

EC Number: 1.12.99.6

an oxidized electron acceptor + H2 <=> a reduced electron acceptor

The reaction direction shown, that is, A + B ↔ C + D versus C + D ↔ A + B, is in accordance with the direction in which it was curated.

This reaction is reversible.

Alternative Substrates [Comment 1]:

In Pathways: hydrogen oxidation I (aerobic)

Cofactors or Prosthetic Groups: an iron-sulfur cluster [Comment 2], Ni2+ [Friedrich93, Bernhard96, Vignais94]

Inhibitors (Unknown Mechanism): Cu2+ [Schink79] , Ni2+ [Schink79] , Hg2+ [Schink79] , Mg2+ [Schink79] , sodium citrate [Schink79] , ferric chloride [Schink79] , p-chloromercuribenzoate [Schink79]


References

Bernhard96: Bernhard M, Schwartz E, Rietdorf J, Friedrich B (1996). "The Alcaligenes eutrophus membrane-bound hydrogenase gene locus encodes functions involved in maturation and electron transport coupling." J Bacteriol 1996;178(15);4522-9. PMID: 8755880

Bernhard97: Bernhard M, Benelli B, Hochkoeppler A, Zannoni D, Friedrich B (1997). "Functional and structural role of the cytochrome b subunit of the membrane-bound hydrogenase complex of Alcaligenes eutrophus H16." Eur J Biochem 1997;248(1);179-86. PMID: 9310376

Friedrich93: Friedrich B, Schwartz E (1993). "Molecular biology of hydrogen utilization in aerobic chemolithotrophs." Annu Rev Microbiol 1993;47;351-83. PMID: 8257102

Kleihues00: Kleihues L, Lenz O, Bernhard M, Buhrke T, Friedrich B (2000). "The H(2) sensor of Ralstonia eutropha is a member of the subclass of regulatory [NiFe] hydrogenases." J Bacteriol 182(10);2716-24. PMID: 10781538

Kortluke92: Kortluke C, Horstmann K, Schwartz E, Rohde M, Binsack R, Friedrich B (1992). "A gene complex coding for the membrane-bound hydrogenase of Alcaligenes eutrophus H16." J Bacteriol 1992;174(19);6277-89. PMID: 1383192

Lorenz89: Lorenz B, Schneider K, Kratzin H, Schlegel HG (1989). "Immunological comparison of subunits isolated from various hydrogenases of aerobic hydrogen bacteria." Biochim Biophys Acta 1989;995(1);1-9. PMID: 2493816

Schink79: Schink B, Schlegel HG (1979). "The membrane-bound hydrogenase of Alcaligenes eutrophus. I. Solubilization, purification, and biochemical properties." Biochim Biophys Acta 1979;567(2);315-24. PMID: 36155

Vignais94: Vignais PM, Toussaint B (1994). "Molecular biology of membrane-bound H2 uptake hydrogenases." Arch Microbiol 1994;161(1);1-10. PMID: 8304820


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Fri Nov 28, 2014, biocyc12.