Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
twitter

MetaCyc Reaction: 4.2.99.18

Superclasses: Reactions Classified By Conversion Type Simple Reactions Chemical Reactions
Reactions Classified By Substrate Macromolecule Reactions Polynucleotide-Reactions DNA-Reactions

EC Number: 4.2.99.18

Enzymes and Genes:
endonuclease III; specific for apurinic and/or apyrimidinic sites Inferred from experiment : nth ( Escherichia coli K-12 substr. MG1655 )

Supersedes EC number: 3.1.25.2

The reaction direction shown, that is, A + B ↔ C + D versus C + D ↔ A + B, is in accordance with the Enzyme Commission system.

Mass balance status: Undetermined; a substrate lacks a chemical formula

Enzyme Commission Primary Name: DNA-(apurinic or apyrimidinic site) lyase

Enzyme Commission Synonyms: AP lyase, AP endonuclease class I, endodeoxyribonuclease (apurinic or apyrimidinic), deoxyribonuclease (apurinic or apyrimidinic), E. coli endonuclease III, phage-T4 UV endonuclease, Micrococcus luteus UV endonuclease, AP site-DNA 5'-phosphomonoester-lyase, X-ray endonuclease III

Enzyme Commission Summary:
The C-O-P bond 3' to the apurinic or apyrimidinic site in DNA is broken by a β-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate

'Nicking' of the phosphodiester bond is due to a lyase-type reaction, not hydrolysis. This group of enzymes was previously listed as endonucleases, under EC 3.1.25.2.

Citations: [Bailly89, Bailly87, Bailly89a]

Gene-Reaction Schematic: ?

Relationship Links: BRENDA:EC:4.2.99.18 , ENZYME:EC:4.2.99.18 , IUBMB-ExplorEnz:EC:4.2.99.18 , UniProt:RELATED-TO:P04418 , UniProt:RELATED-TO:P0AB83 , UniProt:RELATED-TO:P22936 , UniProt:RELATED-TO:P23196 , UniProt:RELATED-TO:P27695 , UniProt:RELATED-TO:P28352 , UniProt:RELATED-TO:P43138 , UniProt:RELATED-TO:P44319 , UniProt:RELATED-TO:P50525 , UniProt:RELATED-TO:P95945 , UniProt:RELATED-TO:Q9CGM5 , UniProt:RELATED-TO:Q9JVT0 , UniProt:RELATED-TO:Q9PHS1 , UniProt:RELATED-TO:Q9PNL1 , UniProt:RELATED-TO:Q58829


References

Bailly87: Bailly V, Verly WG (1987). "Escherichia coli endonuclease III is not an endonuclease but a beta-elimination catalyst." Biochem J 242(2);565-72. PMID: 2439070

Bailly89: Bailly V, Sente B, Verly WG (1989). "Bacteriophage-T4 and Micrococcus luteus UV endonucleases are not endonucleases but beta-elimination and sometimes beta delta-elimination catalysts." Biochem J 259(3);751-9. PMID: 2471512

Bailly89a: Bailly V, Verly WG (1989). "AP endonucleases and AP lyases." Nucleic Acids Res 17(9);3617-8. PMID: 2471157


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Sun Dec 21, 2014, biocyc13.