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MetaCyc Reaction: 4.1.1.39

Superclasses: Reactions Classified By Conversion Type Simple Reactions Chemical Reactions
Reactions Classified By Substrate Small-Molecule Reactions

EC Number: 4.1.1.39

Enzymes and Genes:

Arabidopsis thaliana col : ribulose bisphosphate carboxylase/oxygenase Author statement : RBSS-1B , RBCL
ribulose bisphosphate carboxylase/oxygenase Author statement : RBCL , RBCS-1A
ribulose bisphosphate carboxylase/oxygenase Author statement : RBCS-3B , RBCL
ribulose bisphosphate carboxylase/oxygenase Author statement : RBCS-2B , RBCL
Rhodospirillum rubrum : ribulose bisphosphate carboxylase Inferred from experiment : cbbM
Synechocystis sp. PCC 6803 : ribulose bisphosphate carboxylase Inferred from experiment : cbbS , cbbL
Thermococcus kodakarensis : ribulose bisphosphate carboxylase Inferred from experiment : rbcL

In Pathway: Rubisco shunt , adenosine nucleotides degradation IV , Calvin-Benson-Bassham cycle

The reaction direction shown, that is, A + B ↔ C + D versus C + D ↔ A + B, is in accordance with the Enzyme Commission system.

Most BioCyc compounds have been protonated to a reference pH value of 7.3, and some reactions have been computationally balanced for hydrogen by adding free protons. Please see the PGDB Concepts Guide for more information.

Mass balance status: Balanced.

Enzyme Commission Primary Name: ribulose-bisphosphate carboxylase

Enzyme Commission Synonyms: D-ribulose 1,5-diphosphate carboxylase, D-ribulose-1,5-bisphosphate carboxylase, RuBP carboxylase, carboxydismutase, diphosphoribulose carboxylase, ribulose 1,5-bisphosphate carboxylase, ribulose 1,5-bisphosphate carboxylase/oxygenase, ribulose 1,5-diphosphate carboxylase, ribulose 1,5-diphosphate carboxylase/oxygenase, ribulose bisphosphate carboxylase/oxygenase, ribulose diphosphate carboxylase, ribulose diphosphate carboxylase/oxygenase, rubisco, 3-phospho-D-glycerate carboxy-lyase (dimerizing)

Standard Gibbs Free Energy (ΔrG in kcal/mol): 4.1412964 Inferred by computational analysis [Latendresse13]

Enzyme Commission Summary:
Will utilize O(2) instead of CO(2), forming 3-phospho-D-glycerate and 2-phosphoglycolate.

Citations: [Bowes71, Wishnick69]

Gene-Reaction Schematic: ?

Gene-Reaction Schematic

Unification Links: KEGG:R00024 , Rhea:23124

Relationship Links: BRENDA:EC:4.1.1.39 , ENZYME:EC:4.1.1.39 , IUBMB-ExplorEnz:EC:4.1.1.39 , UniProt:RELATED-TO:O22487 , UniProt:RELATED-TO:O28635 , UniProt:RELATED-TO:O28685 , UniProt:RELATED-TO:O31666 , UniProt:RELATED-TO:O58677 , UniProt:RELATED-TO:O65194 , UniProt:RELATED-TO:P00865 , UniProt:RELATED-TO:P00868 , UniProt:RELATED-TO:P00869 , UniProt:RELATED-TO:P00870 , UniProt:RELATED-TO:P00872 , UniProt:RELATED-TO:P00873 , UniProt:RELATED-TO:P00874 , UniProt:RELATED-TO:P00875 , UniProt:RELATED-TO:P00876 , UniProt:RELATED-TO:P00877 , UniProt:RELATED-TO:P00878 , UniProt:RELATED-TO:P00879 , UniProt:RELATED-TO:P00880 , UniProt:RELATED-TO:P04716 , UniProt:RELATED-TO:P04717 , UniProt:RELATED-TO:P04718 , UniProt:RELATED-TO:P04991 , UniProt:RELATED-TO:P04992 , UniProt:RELATED-TO:P05346 , UniProt:RELATED-TO:P05347 , UniProt:RELATED-TO:P05348 , UniProt:RELATED-TO:P05349 , UniProt:RELATED-TO:P05698 , UniProt:RELATED-TO:P05699 , UniProt:RELATED-TO:P06292 , UniProt:RELATED-TO:P07089 , UniProt:RELATED-TO:P07179 , UniProt:RELATED-TO:P07180 , UniProt:RELATED-TO:P07398 , UniProt:RELATED-TO:P07689 , UniProt:RELATED-TO:P08135 , UniProt:RELATED-TO:P08211 , UniProt:RELATED-TO:P08474 , UniProt:RELATED-TO:P08475 , UniProt:RELATED-TO:P08705 , UniProt:RELATED-TO:P08706 , UniProt:RELATED-TO:P10053 , UniProt:RELATED-TO:P10647 , UniProt:RELATED-TO:P10795 , UniProt:RELATED-TO:P10796 , UniProt:RELATED-TO:P10797 , UniProt:RELATED-TO:P10798 , UniProt:RELATED-TO:P11383 , UniProt:RELATED-TO:P11421 , UniProt:RELATED-TO:P11422 , UniProt:RELATED-TO:P12089 , UniProt:RELATED-TO:P12466 , UniProt:RELATED-TO:P12468 , UniProt:RELATED-TO:P13951 , UniProt:RELATED-TO:P14957 , UniProt:RELATED-TO:P14958 , UniProt:RELATED-TO:P14959 , UniProt:RELATED-TO:P14961 , UniProt:RELATED-TO:P16031 , UniProt:RELATED-TO:P16032 , UniProt:RELATED-TO:P16129 , UniProt:RELATED-TO:P16130 , UniProt:RELATED-TO:P16131 , UniProt:RELATED-TO:P16132 , UniProt:RELATED-TO:P16133 , UniProt:RELATED-TO:P16134 , UniProt:RELATED-TO:P16136 , UniProt:RELATED-TO:P16137 , UniProt:RELATED-TO:P16138 , UniProt:RELATED-TO:P16306 , UniProt:RELATED-TO:P16881 , UniProt:RELATED-TO:P17537 , UniProt:RELATED-TO:P17673 , UniProt:RELATED-TO:P18062 , UniProt:RELATED-TO:P18566 , UniProt:RELATED-TO:P18567 , UniProt:RELATED-TO:P18960 , UniProt:RELATED-TO:P19160 , UniProt:RELATED-TO:P19161 , UniProt:RELATED-TO:P19162 , UniProt:RELATED-TO:P19163 , UniProt:RELATED-TO:P19164 , UniProt:RELATED-TO:P19308 , UniProt:RELATED-TO:P19309 , UniProt:RELATED-TO:P19310 , UniProt:RELATED-TO:P19311 , UniProt:RELATED-TO:P19312 , UniProt:RELATED-TO:P20455 , UniProt:RELATED-TO:P22433 , UniProt:RELATED-TO:P22849 , UniProt:RELATED-TO:P22850 , UniProt:RELATED-TO:P22859 , UniProt:RELATED-TO:P22860 , UniProt:RELATED-TO:P23011 , UniProt:RELATED-TO:P23012 , UniProt:RELATED-TO:P23651 , UniProt:RELATED-TO:P23652 , UniProt:RELATED-TO:P24312 , UniProt:RELATED-TO:P24313 , UniProt:RELATED-TO:P24395 , UniProt:RELATED-TO:P24624 , UniProt:RELATED-TO:P24671 , UniProt:RELATED-TO:P24672 , UniProt:RELATED-TO:P24673 , UniProt:RELATED-TO:P24674 , UniProt:RELATED-TO:P24675 , UniProt:RELATED-TO:P24676 , UniProt:RELATED-TO:P24677 , UniProt:RELATED-TO:P24678 , UniProt:RELATED-TO:P24679 , UniProt:RELATED-TO:P24681 , UniProt:RELATED-TO:P24682 , UniProt:RELATED-TO:P24683 , UniProt:RELATED-TO:P25413 , UniProt:RELATED-TO:P25414 , UniProt:RELATED-TO:P25458 , UniProt:RELATED-TO:P26490 , UniProt:RELATED-TO:P26573 , UniProt:RELATED-TO:P26574 , UniProt:RELATED-TO:P26575 , UniProt:RELATED-TO:P26576 , UniProt:RELATED-TO:P26577 , UniProt:RELATED-TO:P26667 , UniProt:RELATED-TO:P26958 , UniProt:RELATED-TO:P26959 , UniProt:RELATED-TO:P26960 , UniProt:RELATED-TO:P26961 , UniProt:RELATED-TO:P26962 , UniProt:RELATED-TO:P26963 , UniProt:RELATED-TO:P26964 , UniProt:RELATED-TO:P26985 , UniProt:RELATED-TO:P27065 , UniProt:RELATED-TO:P27568 , UniProt:RELATED-TO:P27569 , UniProt:RELATED-TO:P27985 , UniProt:RELATED-TO:P27997 , UniProt:RELATED-TO:P27998 , UniProt:RELATED-TO:P28258 , UniProt:RELATED-TO:P28260 , UniProt:RELATED-TO:P28399 , UniProt:RELATED-TO:P28895 , UniProt:RELATED-TO:P28896 , UniProt:RELATED-TO:P29684 , UniProt:RELATED-TO:P30401 , UniProt:RELATED-TO:P31180 , UniProt:RELATED-TO:P31181 ... [127 more not displayed]


References

Bowes71: Bowes G, Ogren WL, Hageman RH (1971). "Phosphoglycolate production catalyzed by ribulose diphosphate carboxylase." Biochem Biophys Res Commun 45(3);716-22. PMID: 4331471

Latendresse13: Latendresse M. (2013). "Computing Gibbs Free Energy of Compounds and Reactions in MetaCyc."

Wishnick69: Wishnick M, Lane MD, Scrutton MC, Mildvan AS (1969). "The presence of tightly bound copper in ribulose diphosphate carboxylase from spinach." J Biol Chem 244(20);5761-3. PMID: 4310607


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 19.0 on Wed Jul 1, 2015, BIOCYC13A.