Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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MetaCyc Reaction: 4.1.1.39

Superclasses: Reactions Classified By Conversion Type Simple Reactions Chemical Reactions
Reactions Classified By Substrate Small-Molecule Reactions

EC Number: 4.1.1.39

Enzymes and Genes:
ribulose bisphosphate carboxylase/oxygenase Author statement : rbcS2B , ATCG00490 ( Arabidopsis thaliana col )
ribulose bisphosphate carboxylase/oxygenase Author statement : rbcS3B , ATCG00490 ( Arabidopsis thaliana col )
ribulose bisphosphate carboxylase/oxygenase Author statement : ATCG00490 , rbcS1A ( Arabidopsis thaliana col )
ribulose bisphosphate carboxylase/oxygenase Author statement : rbcS1B , ATCG00490 ( Arabidopsis thaliana col )
ribulose bisphosphate carboxylase Inferred from experiment : cbbM ( Rhodospirillum rubrum )
ribulose bisphosphate carboxylase Inferred from experiment : rbcL ( Thermococcus kodakarensis )
ribulose bisphosphate carboxylase Inferred from experiment : cbbS , cbbL ( Synechocystis sp. PCC 6803 )

In Pathway: Rubisco shunt , adenosine nucleotides degradation IV , Calvin-Benson-Bassham cycle

The reaction direction shown, that is, A + B ↔ C + D versus C + D ↔ A + B, is in accordance with the Enzyme Commission system.

Most BioCyc compounds have been protonated to a reference pH value of 7.3, and some reactions have been computationally balanced for hydrogen by adding free protons. Please see the PGDB Concepts Guide for more information.

Mass balance status: Balanced.

Enzyme Commission Primary Name: ribulose-bisphosphate carboxylase

Enzyme Commission Synonyms: D-ribulose 1,5-diphosphate carboxylase, D-ribulose-1,5-bisphosphate carboxylase, RuBP carboxylase, carboxydismutase, diphosphoribulose carboxylase, ribulose 1,5-bisphosphate carboxylase, ribulose 1,5-bisphosphate carboxylase/oxygenase, ribulose 1,5-diphosphate carboxylase, ribulose 1,5-diphosphate carboxylase/oxygenase, ribulose bisphosphate carboxylase/oxygenase, ribulose diphosphate carboxylase, ribulose diphosphate carboxylase/oxygenase, rubisco, 3-phospho-D-glycerate carboxy-lyase (dimerizing)

Standard Gibbs Free Energy (ΔrG in kcal/mol): 4.1412964 Inferred by computational analysis [Latendresse13]

Enzyme Commission Summary:
Will utilize O(2) instead of CO(2), forming 3-phospho-D-glycerate and 2-phosphoglycolate.

Citations: [Bowes71, Wishnick69]

Gene-Reaction Schematic: ?

Unification Links: KEGG:R00024 , Rhea:23124

Relationship Links: BRENDA:EC:4.1.1.39 , ENZYME:EC:4.1.1.39 , IUBMB-ExplorEnz:EC:4.1.1.39 , UniProt:RELATED-TO:O22487 , UniProt:RELATED-TO:O28635 , UniProt:RELATED-TO:O28685 , UniProt:RELATED-TO:O31666 , UniProt:RELATED-TO:O58677 , UniProt:RELATED-TO:O65194 , UniProt:RELATED-TO:P00865 , UniProt:RELATED-TO:P00868 , UniProt:RELATED-TO:P00869 , UniProt:RELATED-TO:P00870 , UniProt:RELATED-TO:P00872 , UniProt:RELATED-TO:P00873 , UniProt:RELATED-TO:P00874 , UniProt:RELATED-TO:P00875 , UniProt:RELATED-TO:P00876 , UniProt:RELATED-TO:P00877 , UniProt:RELATED-TO:P00878 , UniProt:RELATED-TO:P00879 , UniProt:RELATED-TO:P00880 , UniProt:RELATED-TO:P04716 , UniProt:RELATED-TO:P04717 , UniProt:RELATED-TO:P04718 , UniProt:RELATED-TO:P04991 , UniProt:RELATED-TO:P04992 , UniProt:RELATED-TO:P05346 , UniProt:RELATED-TO:P05347 , UniProt:RELATED-TO:P05348 , UniProt:RELATED-TO:P05349 , UniProt:RELATED-TO:P05698 , UniProt:RELATED-TO:P05699 , UniProt:RELATED-TO:P06292 , UniProt:RELATED-TO:P07089 , UniProt:RELATED-TO:P07179 , UniProt:RELATED-TO:P07180 , UniProt:RELATED-TO:P07398 , UniProt:RELATED-TO:P07689 , UniProt:RELATED-TO:P08135 , UniProt:RELATED-TO:P08211 , UniProt:RELATED-TO:P08474 , UniProt:RELATED-TO:P08475 , UniProt:RELATED-TO:P08705 , UniProt:RELATED-TO:P08706 , UniProt:RELATED-TO:P10053 , UniProt:RELATED-TO:P10647 , UniProt:RELATED-TO:P10795 , UniProt:RELATED-TO:P10796 , UniProt:RELATED-TO:P10797 , UniProt:RELATED-TO:P10798 , UniProt:RELATED-TO:P11383 , UniProt:RELATED-TO:P11421 , UniProt:RELATED-TO:P11422 , UniProt:RELATED-TO:P12089 , UniProt:RELATED-TO:P12466 , UniProt:RELATED-TO:P12468 , UniProt:RELATED-TO:P13951 , UniProt:RELATED-TO:P14957 , UniProt:RELATED-TO:P14958 , UniProt:RELATED-TO:P14959 , UniProt:RELATED-TO:P14961 , UniProt:RELATED-TO:P16031 , UniProt:RELATED-TO:P16032 , UniProt:RELATED-TO:P16129 , UniProt:RELATED-TO:P16130 , UniProt:RELATED-TO:P16131 , UniProt:RELATED-TO:P16132 , UniProt:RELATED-TO:P16133 , UniProt:RELATED-TO:P16134 , UniProt:RELATED-TO:P16136 , UniProt:RELATED-TO:P16137 , UniProt:RELATED-TO:P16138 , UniProt:RELATED-TO:P16306 , UniProt:RELATED-TO:P16881 , UniProt:RELATED-TO:P17537 , UniProt:RELATED-TO:P17673 , UniProt:RELATED-TO:P18062 , UniProt:RELATED-TO:P18566 , UniProt:RELATED-TO:P18567 , UniProt:RELATED-TO:P18960 , UniProt:RELATED-TO:P19160 , UniProt:RELATED-TO:P19161 , UniProt:RELATED-TO:P19162 , UniProt:RELATED-TO:P19163 , UniProt:RELATED-TO:P19164 , UniProt:RELATED-TO:P19308 , UniProt:RELATED-TO:P19309 , UniProt:RELATED-TO:P19310 , UniProt:RELATED-TO:P19311 , UniProt:RELATED-TO:P19312 , UniProt:RELATED-TO:P20455 , UniProt:RELATED-TO:P22433 , UniProt:RELATED-TO:P22849 , UniProt:RELATED-TO:P22850 , UniProt:RELATED-TO:P22859 , UniProt:RELATED-TO:P22860 , UniProt:RELATED-TO:P23011 , UniProt:RELATED-TO:P23012 , UniProt:RELATED-TO:P23651 , UniProt:RELATED-TO:P23652 , UniProt:RELATED-TO:P24312 , UniProt:RELATED-TO:P24313 , UniProt:RELATED-TO:P24395 , UniProt:RELATED-TO:P24624 , UniProt:RELATED-TO:P24671 , UniProt:RELATED-TO:P24672 , UniProt:RELATED-TO:P24673 , UniProt:RELATED-TO:P24674 , UniProt:RELATED-TO:P24675 , UniProt:RELATED-TO:P24676 , UniProt:RELATED-TO:P24677 , UniProt:RELATED-TO:P24678 , UniProt:RELATED-TO:P24679 , UniProt:RELATED-TO:P24681 , UniProt:RELATED-TO:P24682 , UniProt:RELATED-TO:P24683 , UniProt:RELATED-TO:P25413 , UniProt:RELATED-TO:P25414 , UniProt:RELATED-TO:P25458 , UniProt:RELATED-TO:P26490 , UniProt:RELATED-TO:P26573 , UniProt:RELATED-TO:P26574 , UniProt:RELATED-TO:P26575 , UniProt:RELATED-TO:P26576 , UniProt:RELATED-TO:P26577 , UniProt:RELATED-TO:P26667 , UniProt:RELATED-TO:P26958 , UniProt:RELATED-TO:P26959 , UniProt:RELATED-TO:P26960 , UniProt:RELATED-TO:P26961 , UniProt:RELATED-TO:P26962 , UniProt:RELATED-TO:P26963 , UniProt:RELATED-TO:P26964 , UniProt:RELATED-TO:P26985 , UniProt:RELATED-TO:P27065 , UniProt:RELATED-TO:P27568 , UniProt:RELATED-TO:P27569 , UniProt:RELATED-TO:P27985 , UniProt:RELATED-TO:P27997 , UniProt:RELATED-TO:P27998 , UniProt:RELATED-TO:P28258 , UniProt:RELATED-TO:P28260 , UniProt:RELATED-TO:P28399 , UniProt:RELATED-TO:P28895 , UniProt:RELATED-TO:P28896 , UniProt:RELATED-TO:P29684 , UniProt:RELATED-TO:P30401 , UniProt:RELATED-TO:P31180 , UniProt:RELATED-TO:P31181 ... [127 more not displayed]


References

Bowes71: Bowes G, Ogren WL, Hageman RH (1971). "Phosphoglycolate production catalyzed by ribulose diphosphate carboxylase." Biochem Biophys Res Commun 45(3);716-22. PMID: 4331471

Latendresse13: Latendresse M. (2013). "Computing Gibbs Free Energy of Compounds and Reactions in MetaCyc."

Wishnick69: Wishnick M, Lane MD, Scrutton MC, Mildvan AS (1969). "The presence of tightly bound copper in ribulose diphosphate carboxylase from spinach." J Biol Chem 244(20);5761-3. PMID: 4310607


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Sat Nov 22, 2014, BIOCYC13B.