Metabolic Modeling Tutorial
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
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MetaCyc Reaction: 1.8.2.3

Superclasses: Reactions Classified By Conversion Type Simple Reactions Chemical Reactions Protein-Modification Reactions
Reactions Classified By Substrate Macromolecule Reactions Protein-Reactions Protein-Modification Reactions

EC Number: 1.8.2.3

Enzymes and Genes:
SoxF Inferred from experiment : soxF ( Paracoccus pantotrophus )
flavocytochrome c sulfide dehydrogenase Inferred from experiment ( Thiobacillus sp. W5 )
flavocytochrome c sulfide dehydrogenase Inferred from experiment : fccA , fccB ( Allochromatium vinosum )

In Pathway: sulfide oxidation II (sulfide dehydrogenase)

The reaction direction shown, that is, A + B ↔ C + D versus C + D ↔ A + B, is in accordance with the Enzyme Commission system.

Most BioCyc compounds have been protonated to a reference pH value of 7.3, and some reactions have been computationally balanced for hydrogen by adding free protons. Please see the PGDB Concepts Guide for more information.

Mass balance status: Balanced.

Enzyme Commission Primary Name: sulfide-cytochrome-c reductase (flavocytochrome c)

Standard Gibbs Free Energy (ΔrG in kcal/mol): -6.126465 Inferred by computational analysis [Latendresse13]

Enzyme Commission Summary:
The enzyme from Allochromatium vinosum contains covalently bound FAD and covalently-bound c-type hemes.

Citations: [Chen94a, Kusai73, Fukumori79, Gray83, Sorokin98, Kostanjevecki00]

Gene-Reaction Schematic: ?

Relationship Links: BRENDA:EC:1.8.2.3 , ENZYME:EC:1.8.2.3 , IUBMB-ExplorEnz:EC:1.8.2.3

Credits:
Revised 21-Apr-2011 by Caspi R , SRI International


References

Chen94a: Chen ZW, Koh M, Van Driessche G, Van Beeumen JJ, Bartsch RG, Meyer TE, Cusanovich MA, Mathews FS (1994). "The structure of flavocytochrome c sulfide dehydrogenase from a purple phototrophic bacterium." Science 266(5184);430-2. PMID: 7939681

Fukumori79: Fukumori Y, Yamanaka T (1979). "Flavocytochrome c of Chromatium vinosum. Some enzymatic properties and subunit structure." J Biochem (Tokyo) 85(6);1405-14. PMID: 222744

Gray83: Gray GO, Gaul DF, Knaff DB (1983). "Partial purification and characterization of two soluble c-type cytochromes from Chromatium vinosum." Arch Biochem Biophys 222(1);78-86. PMID: 6301383

Kostanjevecki00: Kostanjevecki V, Brige A, Meyer TE, Cusanovich MA, Guisez Y, van Beeumen J (2000). "A membrane-bound flavocytochrome c-sulfide dehydrogenase from the purple phototrophic sulfur bacterium Ectothiorhodospira vacuolata." J Bacteriol 182(11);3097-103. PMID: 10809687

Kusai73: Kusai K, Yamanaka T (1973). "The oxidation mechanisms of thiosulphate and sulphide in Chlorobium thiosulphatophilum: roles of cytochrome c-551 and cytochrome c-553." Biochim Biophys Acta 325(2);304-14. PMID: 4357558

Latendresse13: Latendresse M. (2013). "Computing Gibbs Free Energy of Compounds and Reactions in MetaCyc."

Sorokin98: Sorokin DYu , de Jong GA, Robertson LA, Kuenen GJ (1998). "Purification and characterization of sulfide dehydrogenase from alkaliphilic chemolithoautotrophic sulfur-oxidizing bacteria." FEBS Lett 427(1);11-4. PMID: 9613590


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Sun Dec 21, 2014, BIOCYC13B.