Pathway Tools BLAST Search Page

Submit a sequence to BLAST against the complete genome of the currently selected organism. The output contains links to the gene or protein pages found in the search.

For more information about BLAST and the various options available, see the BLAST page at NCBI.

Type of query sequence: Type of database to search against:

Program:

Enter your query sequence here in FASTA format:

Expectation Value Threshold:

Filter query sequence for low-complexity regions?

Query Genetic Codes (blastx only)


  Matrix         Gap existence cost   Per residue gap cost    Lambda ratio

Other advanced options:

Report Errors or Provide Feedback
Page generated by SRI International Pathway Tools version 18.5 on Mon Jan 26, 2015, BIOCYC14B.
EcoCyc version 18.5.

Specify List of Organism Databases

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Find in tree:

Find organisms whose property:

Database lists are saved as SmartTables that you can edit from your My SmartTables page.

Current Selection

0 databases currently selected.

Note: if you create a user account and log in, you can save your database lists for next time.