Summary This Pathway/Genome Database (PGDB) was generated by the PathoLogic [Karp10, Karp11, Caspi14] component of Pathway Tools software version 22.0 and MetaCyc version 22.0 on 22-May-2018 15:38:52.
Genome
ContigTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_GL98514118818170195,203RefSeq:NZ_GL985141
NZ_GL98514212112100143,075RefSeq:NZ_GL985142
NZ_GL98514613213200112,850RefSeq:NZ_GL985146
NZ_GL98514390900097,989RefSeq:NZ_GL985143
NZ_GL985147817011084,359RefSeq:NZ_GL985147
NZ_GL98514486842083,903RefSeq:NZ_GL985144
NZ_GL98514558580074,807RefSeq:NZ_GL985145
NZ_GL98514862620063,460RefSeq:NZ_GL985148
NZ_GL98515459590060,419RefSeq:NZ_GL985154
NZ_GL98515149490051,270RefSeq:NZ_GL985151
NZ_GL98514944440049,780RefSeq:NZ_GL985149
NZ_GL98515339390048,375RefSeq:NZ_GL985153
NZ_GL985150533815045,716RefSeq:NZ_GL985150
NZ_GL98516340400044,010RefSeq:NZ_GL985163
NZ_GL98515236360042,849RefSeq:NZ_GL985152
NZ_GL98516241410039,597RefSeq:NZ_GL985162
NZ_GL98515727270037,576RefSeq:NZ_GL985157
NZ_GL98517131310035,204RefSeq:NZ_GL985171
NZ_GL98516130300034,306RefSeq:NZ_GL985161
NZ_GL98516037352032,977RefSeq:NZ_GL985160
NZ_GL98515929290030,388RefSeq:NZ_GL985159
NZ_GL98515521210028,258RefSeq:NZ_GL985155
NZ_GL98515621210027,733RefSeq:NZ_GL985156
NZ_GL98515819190023,681RefSeq:NZ_GL985158
NZ_GL98518419190022,913RefSeq:NZ_GL985184
NZ_GL98517428253021,821RefSeq:NZ_GL985174
NZ_GL98516412120021,593RefSeq:NZ_GL985164
NZ_GL98516518180021,553RefSeq:NZ_GL985165
NZ_GL98517618180020,934RefSeq:NZ_GL985176
NZ_GL98517020200020,221RefSeq:NZ_GL985170
NZ_GL98517316160020,052RefSeq:NZ_GL985173
NZ_GL98516715150019,871RefSeq:NZ_GL985167
NZ_GL98516616160018,813RefSeq:NZ_GL985166
NZ_GL98517820200017,651RefSeq:NZ_GL985178
NZ_GL98517222220016,778RefSeq:NZ_GL985172
NZ_GL98518714131014,766RefSeq:NZ_GL985187
NZ_GL98518920200014,443RefSeq:NZ_GL985189
NZ_GL98518611110013,949RefSeq:NZ_GL985186
NZ_GL98518111110013,658RefSeq:NZ_GL985181
NZ_GL985188990013,384RefSeq:NZ_GL985188
NZ_GL985177880012,692RefSeq:NZ_GL985177
NZ_GL98518012120012,652RefSeq:NZ_GL985180
NZ_GL98517913130012,637RefSeq:NZ_GL985179
NZ_GL98518214140011,953RefSeq:NZ_GL985182
NZ_GL98519214140011,897RefSeq:NZ_GL985192
NZ_GL98517517170011,556RefSeq:NZ_GL985175
NZ_GL9852191313008,733RefSeq:NZ_GL985219
418 Undisplayed Contigs/Replicons49849080614,238
Total:2,2522,2034902,476,543
Ortholog data available?No
Database Contents
Genes2,252
Pathways192
Enzymatic Reactions1,146
Transport Reactions154
Polypeptides2,777
Protein Complexes52
Enzymes751
Transporters267
Compounds1,017
Transcription Units1,701
tRNAs42
Growth Media19
Protein Features2,220
GO Annotations3,109
Database Version29.6
Synonyms Fusobacterium nucleatum subsp. animalis NCTC 12276
Fusobacterium nucleatum subsp. animalis str. ATCC 51191
Fusobacterium nucleatum subsp. animalis strain ATCC 51191
Fusobacterium nucleatum subsp. animalis ATCC 51191
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Fusobacteriati
Fusobacteriota
Fusobacteriia
Fusobacteriales
Fusobacteriaceae
Fusobacterium
Fusobacterium nucleatum
Fusobacterium nucleatum animalis
Fusobacterium nucleatum animalis ATCC 51191
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
NCBI BioProjectPRJNA181567
NCBI-Taxonomy997347
Environmenturogenital tract, vaginal
HostHomo sapiens
Human Microbiome Body Siteurogenital-tract

References

Caspi14: Caspi R, Altman T, Billington R, Dreher K, Foerster H, Fulcher CA, Holland TA, Keseler IM, Kothari A, Kubo A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Weerasinghe D, Zhang P, Karp PD (2014). "The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases." Nucleic Acids Res. 42(1):D459-D471. PMID: 24225315

Karp10: Karp PD, Paley SM, Krummenacker M, Latendresse M, Dale JM, Lee TJ, Kaipa P, Gilham F, Spaulding A, Popescu L, Altman T, Paulsen I, Keseler IM, Caspi R (2010). "Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology." Brief Bioinform 11(1);40-79. PMID: 19955237

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

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Page generated by Pathway Tools version 29.5 (software by SRI International) on Tue Jun 9, 2026, BIOCYC19.