Summary This Pathway/Genome Database (PGDB) was generated by the PathoLogic [1, 2] component of Pathway Tools software version 24.5 and MetaCyc [3] version 24.1 on 09-Jul-2020 18:52:18.
Genome
RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_CP0293435,2874,9661082135,844,653RefSeq:NZ_CP029343
Ortholog data available?Yes
Database Contents
Genes5,287
Pathways285
Enzymatic Reactions1,455
Transport Reactions67
Polypeptides4,968
Protein Complexes48
Enzymes915
Transporters407
Compounds1,076
Transcription Units3,314
tRNAs82
Protein Features6,444
GO Terms2
Database Version29.0
Sequence SourceGCF_003143515.1
Synonyms Massilia sp. CCUG 43427A
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Betaproteobacteria
Burkholderiales
Oxalobacteraceae
Massilia
Massilia oculi
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN09104968
NCBI BioProjectPRJNA224116
NCBI-Taxonomy945844
Environmentnone
Geographic Locationnone
Hostunidentified
Annotation ProviderNCBI RefSeq
Annotation Date2020-02-24
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version4.11
Annotation CommentBest-placed reference protein set; GeneMarkS-2+
NCBI Genome Typerepresentative


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Page generated by Pathway Tools version 29.0 (software by SRI International) on Tue Sep 9, 2025, BIOCYC19.