Summary This Pathway/Genome Database (PGDB) was generated by the PathoLogic [1, 2] component of Pathway Tools software version 28.5 and MetaCyc [3] version 28.1 on 21-Sep-2024 00:30:21.
Genome
RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
Chromosome I3,1962,7801302863,236,208NCBI Assembly:GCF_003942025.1
Chromosome II1,1601,020161241,207,029NCBI Assembly:GCF_003942025.1
pRVS1-224262244018285,684NCBI Assembly:GCF_003942025.1
pVS320-22439340531,858NCBI Assembly:GCF_003942025.1
Total:4,6574,0781464334,760,779
Ortholog data available?No
Database Contents
Genes4,657
Pathways308
Enzymatic Reactions1,696
Transport Reactions97
Polypeptides4,078
Protein Complexes88
Enzymes877
Transporters336
Compounds1,406
Transcription Units3,392
tRNAs102
GO Terms5,093
Database Version29.0
Sequence SourceGCF_003942025.1
Synonyms Vibrio salmonicida
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Gammaproteobacteria
Vibrionales
Vibrionaceae
Aliivibrio
Aliivibrio salmonicida
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN10496237
NCBI BioProjectPRJNA224116
NCBI-Taxonomy40269
Environmentdiseased Atlantic salmon
Geographic LocationNorway
Collection Date1987
HostSalmo salar
Annotation ProviderNCBI RefSeq
Annotation Date2024-04-8
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version6.7
Annotation CommentBest-placed reference protein set; GeneMarkS-2+


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Page generated by Pathway Tools version 29.0 (software by SRI International) on Fri May 16, 2025, BIOCYC15A.