Regulatory Overview

Pan left/right/up/down the entire diagram by holding the left mouse button, left-click on gene node to open its gene page, right-click (ctrl-click for Mac) on gene or blank area for menus

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Highlighting by Gene Name Substring

Highlighting by Gene Name or Frame Id

Highlighting by Gene Ontology Terms

Type in or browse to select Gene Ontology term(s) to highlight genes annotated with them

Include Regulatory Arrows Between Genes Found

Changing the Network Layout

Regulatory Overview Legend

For the inside-out layout

Inner ring: master regulators and sigma factors.
Outer ring: genes that are regulated only.
Middle ring: all other genes.

For the top-to-bottom layout

Genes on the same row do not regulate each other.
Genes on the last row do not regulate any gene.

For both layouts

+ / - : a gene that has activators/inhibitors only.
o : a gene that has activators and inhibitors.
Oval : a gene that has all its regulators with an unknown mode of regulation.
Square : a gene encoding a sigma factor.

Omics Viewer Data and Parameters

Omics Viewer Control Panel

Omics Data Report Table

Specify List of Organism Databases

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Find in tree:

Find organisms whose property:

Database lists are saved as SmartTables that you can edit from your My SmartTables page. To add organisms from a saved list, check the box next to the list name and then click the "Add" button.

Tier 1 and Tier 2 databases are displayed with orange and gray backgrounds, respectively.

Current Selection

0 databases or taxonomic groups currently selected.

Note: if you create a user account and log in, you can save your database lists for next time.