Public SmartTables Directory

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A SmartTable is a collection of BioCyc objects, such as genes or metabolites, together with associated data, that can be created, edited, manipulated, and shared on the web.

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1Genes from H2O2 time series with |TP7| >1
Escherichia coli K-12 substr. MG1655
all-genes
145
Suzanne PaleyFri Nov 01 2024 02:01 pm
2Orphan enzymes in E. coli
Escherichia coli K-12 substr. MG1655
reactions
29
Jeremy ZuckerThu Oct 31 2024 02:07 pm
3Pwys for Pathway Collage test.A small set of test pathways I use to demo pathway collages.
Escherichia coli K-12 substr. MG1655
pathways
5
Suzanne PaleyTue Oct 15 2024 11:48 am
4All genes of E. coli K-12 substr. MG1655
Escherichia coli K-12 substr. MG1655
all-genes
4747
Gabriella MachadoSat Sep 21 2024 02:35 am
5Genes of a reaction from All instances of Reactions in Prochlorococcus marinus pastoris CCMP1986
Prochlorococcus marinus pastoris CCMP1986
string
728
Jeremy ZuckerThu Sep 05 2024 09:57 am
6Genes with no Characterization Levels in E. coli K-12 substr. MG1655
Escherichia coli K-12 substr. MG1655
all-genes
206
Lisa MooreWed Sep 04 2024 12:22 am
7Uncharacterized Genes of E. coli K-12 substr. MG1655
Escherichia coli K-12 substr. MG1655
string
742
Lisa MooreWed Sep 04 2024 02:43 am
8UF Treatments Confidence 1.00
MetaCyc
string
277
Joseph JamesTue Sep 03 2024 08:44 am
9c18_pos_biofilm2_metabolite_annotations
MetaCyc
compounds
90
Yutian FengWed Aug 28 2024 11:06 am
10C18_neg_metabolite_annotations_biofilm2
MetaCyc
compounds
94
Yutian FengWed Aug 28 2024 10:47 am
11gcms_biofilm2_metabolite_annotations
MetaCyc
compounds
39
Yutian FengWed Aug 28 2024 10:32 am
12K v SR
Escherichia coli K-12 substr. MG1655
all-genes
400
Anna BętkowskaSun Aug 18 2024 09:14 pm
13K v OR
Escherichia coli K-12 substr. MG1655
all-genes
186
Anna BętkowskaSun Aug 18 2024 09:13 pm
14K v S
Escherichia coli K-12 substr. MG1655
all-genes
110
Anna BętkowskaSun Aug 18 2024 09:12 pm
15K v O
Escherichia coli K-12 substr. MG1655
all-genes
171
Anna BętkowskaSun Aug 18 2024 09:07 pm
16All MetaCyc pathway classes, their direct parents and direct instancesTo create this table, I started with a ST containing one item, the Pathways class (which I created from the page for that class, https://metacyc.org/META/new-image?object=Pathways). I then used the transform "Ontology - All subclasses of class" to add a subclasses column. I then clicked on the green plus icon in the subclasses column to generate a ST (this ST) containing all classes under the Pathways class. I then added the two transform columns you see.
MetaCyc
pathways
720
Suzanne PaleyThu Aug 01 2024 02:54 pm
17Gene Characterization Levels of E. coli K-12 substr. MG1655
Escherichia coli K-12 substr. MG1655
string
4747
Lisa MooreThu Aug 01 2024 07:49 am
18MetaCyc pathways and all their parent classes
MetaCyc
pathways
3536
Suzanne PaleyWed Jul 31 2024 09:45 am
19GSE71562 Anaerobic-Aerobic transition, significant genes only.This SmartTable is an example generated via the Cellular Dashboard. The RNA-Seq dataset is derived from von Wulffen et al, PMID 27384956, and has been normalized using the TPM approach. Only genes w/ fold-change > +/- 2 and p-value < .05 are included. To view this dataset using the Cellular Dashboard, see https://biocyc.org/dashboard/dashboard.html?st=biocyc17-463-3702945483.
Escherichia coli K-12 substr. MG1655
all-genes
643
Suzanne PaleyWed Jul 24 2024 09:45 am
20Expression Ratios
Escherichia coli K-12 substr. MG1655
all-genes
4275
anamika kothariWed May 15 2024 11:46 am
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Page generated by Pathway Tools version 28.0 (software by SRI International) on Mon Nov 4, 2024, BIOCYC17B.
EcoCyc version 28.1.