Public SmartTables Directory

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A SmartTable is a collection of BioCyc objects, such as genes or metabolites, together with associated data, that can be created, edited, manipulated, and shared on the web.

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1New SmartTable with nhaA
Escherichia coli K-12 substr. MG1655
all-genes
6
YIMING HUANGSun Sep 10 2023 09:55 pm
2Enriched from Dark Green & Purple Transcription Genes (12 Results)
Abiotrophia defectiva ATCC 49176
pathways
12
Olivia NobleFri Sep 08 2023 01:26 pm
3Copy of all gene products that have one of the following evidence codes: EV-COMP, EV-IC, EV-EXP
Synechocystis sp. PCC 6803 substr. Kazusa
all-genes
322
Lisa MooreFri Sep 08 2023 01:20 pm
4SmT shared: genes-without-TUs SmartTable - 2023-08-28T17:59:16 -8
Escherichia coli K-12 substr. MG1655
all-genes
158
helio sunMon Aug 28 2023 08:28 pm
5GSE71562 RNA-Seq anaerobic-aerobic transitionThis SmartTable is an example generated via the Cellular Dashboard. The data is derived from von Wulffen et al, PMID 27384956, and has been normalized using the TPM approach. To view this dataset using the Cellular Dashboard, see http://biocyc.org/dashboard/dashboard.html?st=samo-463-3699298732.
Escherichia coli K-12 substr. MG1655
gene-fragments, symbol, all-genes
4231
Suzanne PaleyFri Aug 18 2023 09:49 am
6Genes categorias 1, 4A e 5A
Escherichia coli K-12 substr. MG1655
all-genes
68
Gabriella MachadoMon Aug 07 2023 02:27 pm
7updated 383 genes 417 EC numbers
Methanocaldococcus jannaschii DSM 2661
reactions, proteins
417
Christos OuzounisFri Aug 04 2023 11:02 am
8Sequences of Promoters regulated by RpoS and RpoDHow this SmartTable was generated: 1) From the source table, I clicked on the plus icon for the Recognized-Promoters to get a new ST w/ the promoters (you could also have started from the Special ST for all promoters, added the property Binds-Sigma-Factor and filtered based on that column). 2) Added the transform column "Sequence - coordinates of DNA region". Unfortunately that just gives you a sequence region one base long, the transcription start site, so it has to be extended. 3) Selected the sequence region column, and added the transform column "Sequence - modify coordinates of DNA region". I added 60 bases upstream and 25 bases downstream, which is what we show when we draw our promoter sequences on our transcription-unit pages. 4) I selected the new region column and added the transform "Sequence - sequence of DNA region". 5) I tweaked the column names to make them more comprehensible.
Escherichia coli K-12 substr. MG1655
promoters
2241
Suzanne PaleyTue Jul 18 2023 08:42 am
9Genes regulated by RpoS and RpoDTo get a list of all genes regulated by sigma S: From rpoS, I added a transform to the gene product. Selected the gene product column and added the property Recognized-Promoters. Selected that column and added the transform "transcription units of promoter". Selected that column and added the transform "Genes of transcription unit". I then added a new row, entered rpoD (selected "rpoD (All Genes)" from autocomplete options), and all its other columns were filled in automatically.
Escherichia coli K-12 substr. MG1655
all-genes
2
Suzanne PaleyMon Jul 17 2023 08:27 am
10Location, Copy-Number, esentiality, All genes of E. coli K-12 substr. MG1655
Escherichia coli K-12 substr. MG1655
all-genes
4706
Tatsuya SakaguchiTue Jun 27 2023 06:04 am
11New SmartTable - 2023-06-07T06:46:36 -8
Saccharomyces cerevisiae S288c
all-genes
27
t.kosirWed Jun 07 2023 06:51 am
12Copy of All genes of E. coli K-12 substr. MG1655
Escherichia coli K-12 substr. MG1655
all-genes
4746
家坤 朱Tue May 23 2023 08:20 pm
13Genes of E. coli K-12 substr. MG1655 with TAG stop codon
Escherichia coli K-12 substr. MG1655
all-genes
330
Gabriella MachadoWed May 17 2023 07:30 am
14 All transporters of S. cerevisiae S288c
Saccharomyces cerevisiae S288c
all-genes
349
Mohamed OuertaniWed May 17 2023 12:04 pm
15 All transporters of B. subtilis subtilis 168
Bacillus subtilis subtilis 168
all-genes
633
Mohamed OuertaniWed May 17 2023 12:00 pm
16 All transporters of E. coli K-12 substr. MG1655
Escherichia coli K-12 substr. MG1655
string, all-genes
480
Mohamed OuertaniTue May 16 2023 11:56 pm
17Bacillus subtilis 168 amino acid biosynthesis
Bacillus subtilis subtilis 168
pathways
33
Kelsie NautaTue Apr 25 2023 12:40 am
18oxygenic photosynthesis of 10 cyanobacteria
Synechococcus elongatus PCC 7942, Neosynechococcus sphagnicola CAUP A 1101, Mastigocladopsis repens PCC 10914, Leptolyngbya frigida ULC18, Leptolyngbya boryana dg5, Calothrix brevissima NIES-22, Anabaena azotica FACHB-119, Aliterella atlantica CENA595, Acaryochloris sp. CCMEE 5410, Acaryochloris marina MBIC11017
organisms
10
nitsan catalanSat Apr 01 2023 06:15 pm
19Locomotion genes in other PGDBs
Synechococcus elongatus PCC 7942
all-genes
45
Stas MalavinFri Mar 31 2023 04:04 pm
20Locomotion
Synechococcus elongatus PCC 7942
all-genes
5
Stas MalavinFri Mar 31 2023 02:09 pm
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