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Public SmartTables Directory

Welcome to SmartTables

A SmartTable is a collection of BioCyc objects, such as genes or metabolites, together with associated data, that can be created, edited, manipulated, and shared on the web.

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1Pathway.Selenite.FC2
Pseudomonas putida KT2440
pathways
32
Said MunozWed Jul 20 2022 12:41 am
2STELLASTELLA algorithm example table https://github.com/ComplexityBiosystems/STELLA/blob/main/2_CreateTable_Metacyc.R
MetaCyc
pathways
3388
Matteo TajanaMon Jul 18 2022 05:06 am
3potential chromosome integration sites - Flagellar
Escherichia coli K-12 substr. MG1655
pseudo-products, proteins
36
Thomas ReillyThu Jul 07 2022 02:33 pm
4Double negative Regulators
Escherichia coli K-12 substr. MG1655
proteins
677
Jeremy ZuckerFri Jul 01 2022 02:01 pm
5Linear regulators of E. coli
Escherichia coli K-12 substr. MG1655
all-genes
473
Jeremy ZuckerFri Jul 01 2022 01:27 pm
65 STRING from a list
Escherichia coli K-12 substr. MG1655
all-genes
5
Anamika KothariFri Jun 24 2022 08:51 am
7Copy of Drug-efflux transporters represented in EcoCyc and their reactionsEfflux pump genes and their regulators in E. coli K-12
Escherichia coli K-12 substr. MG1655
proteins
27
Danna GiffordMon May 30 2022 06:28 am
8Copy of All transporters of E. coli K-12 substr. MG1655Transporter genes and their regulators in E. coli K-12
Escherichia coli K-12 substr. MG1655
proteins
480
Danna GiffordTue May 17 2022 07:23 am
9MetaCyc Pathway Classes
MetaCyc
pathways
674
Suzanne PaleyWed May 11 2022 09:51 am
10Curated transcription factor binding regulatory interactions in BsubCyc
Bacillus subtilis subtilis 168
regulation
169
Suzanne PaleyMon May 09 2022 10:26 am
11Genes in transcription unit from Curated transcription factor binding regulatory interactions
Bacillus subtilis subtilis 168
all-genes
331
Suzanne PaleyMon May 09 2022 10:17 am
12E. coli transcription factor DNA-binding region sequences
Escherichia coli K-12 substr. MG1655
all-genes
203
Suzanne PaleyWed Apr 20 2022 05:06 pm
13Km Kcat enzymes of E. coli K-12 substr. MG1655
Escherichia coli K-12 substr. MG1655
proteins
1425
Yang YuSat Mar 26 2022 03:21 pm
14Km Kcat All enzymes of B. subtilis subtilis 168
Bacillus subtilis subtilis 168
proteins
997
Yang YuFri Mar 11 2022 07:05 pm
15All transcription units of E. coli K-12 substr. MG1655 with promoter and terminator coords
Escherichia coli K-12 substr. MG1655
transcription-units
3697
Suzanne PaleyThu Feb 24 2022 06:50 pm
16Multi-cause, multi-confounder front-door motifCauses-> Mediator->Effects<-Regulators->Causes
Escherichia coli K-12 substr. MG1655
all-genes
1945
Jeremy ZuckerFri Feb 18 2022 11:54 am
17all attenuators, cryptic prophages, mRNA binding sites, origin of replication, extragenic sites, ph
Escherichia coli K-12 substr. MG1655
mrna-binding-sites, dna-segments, extragenic-sites, dna-binding-sites, transcription-units, terminators, promoters
13228
Carl StoneTue Jan 11 2022 12:24 am
18Hall Study humann3 pathways
MetaCyc
string
320
Poorani SubramanianThu Jan 06 2022 10:25 am
19Genes regulated by RpoS and RpoDTo get a list of all genes regulated by sigma S: From rpoS, I added a transform to the gene product. Selected the gene product column and added the property Recognized-Promoters. Selected that column and added the transform "transcription units of promoter". Selected that column and added the transform "Genes of transcription unit". I then added a new row, entered rpoD (selected "rpoD (All Genes)" from autocomplete options), and all its other columns were filled in automatically.
Escherichia coli K-12 substr. MG1655
all-genes
2
Suzanne PaleyTue Dec 21 2021 10:45 am
2048 pp sars, Bannerman et al 2021
Homo sapiens
pathways, all-genes
49
Bridget BannermanSat Dec 04 2021 09:56 am
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